Wall clock time and date at job start Sat Apr 11 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35453 * 128.01078 * 2 1 4 4 O 1.34039 * 106.44620 * 180.02562 * 3 2 1 5 5 N 1.20922 * 111.57056 * 0.02562 * 4 3 2 6 6 C 1.30170 * 111.60262 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.80257 * 179.73140 * 6 5 4 8 8 N 1.46901 * 109.46870 * 90.02467 * 7 6 5 9 9 C 1.46897 * 111.00113 * 176.17276 * 8 7 6 10 10 H 1.08996 * 109.46946 * 325.93947 * 9 8 7 11 11 C 1.53001 * 109.47178 * 205.94200 * 9 8 7 12 12 N 1.46498 * 109.47172 * 54.99859 * 11 9 8 13 13 C 1.34780 * 119.99955 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00337 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99703 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46644 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99888 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99387 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00249 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46801 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46756 * 120.00153 * 21 19 17 24 24 H 1.48492 * 109.47284 * 240.00319 * 21 19 17 25 25 C 1.52998 * 109.47441 * 85.94278 * 9 8 7 26 26 C 1.52999 * 117.49943 * 252.75298 * 25 9 8 27 27 C 1.52995 * 117.50265 * 184.09521 * 25 9 8 28 28 H 1.09005 * 109.46935 * 269.97263 * 1 2 3 29 29 H 1.09007 * 109.47036 * 29.96933 * 1 2 3 30 30 H 1.08998 * 109.47696 * 149.96844 * 1 2 3 31 31 H 1.08004 * 126.77295 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47467 * 210.02186 * 7 6 5 33 33 H 1.08996 * 109.47305 * 330.02574 * 7 6 5 34 34 H 1.00900 * 111.00288 * 52.21703 * 8 7 6 35 35 H 1.09005 * 109.47054 * 174.99960 * 11 9 8 36 36 H 1.08996 * 109.47207 * 294.99997 * 11 9 8 37 37 H 0.96998 * 120.00368 * 0.02562 * 12 11 9 38 38 H 1.08997 * 109.46897 * 300.00027 * 15 13 12 39 39 H 1.08996 * 109.47141 * 60.00182 * 15 13 12 40 40 H 0.97000 * 120.00304 * 179.97438 * 20 19 17 41 41 H 1.09007 * 115.54593 * 38.41975 * 25 9 8 42 42 H 1.09005 * 117.49715 * 0.02562 * 26 25 9 43 43 H 1.09003 * 117.49706 * 145.01537 * 26 25 9 44 44 H 1.08999 * 117.49894 * 214.98298 * 27 25 9 45 45 H 1.09000 * 117.49730 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0672 0.0000 4 8 3.5876 0.5746 -0.0006 5 7 3.5877 -0.6347 -0.0014 6 6 2.3775 -1.1140 -0.0021 7 6 1.9825 -2.5683 -0.0088 8 7 1.8557 -3.0477 1.3740 9 6 1.3833 -4.4382 1.4079 10 1 0.6954 -4.6085 0.5798 11 6 0.6622 -4.6997 2.7318 12 7 -0.4079 -3.7148 2.9079 13 6 -1.1825 -3.7511 4.0103 14 8 -0.9933 -4.5988 4.8567 15 6 -2.2836 -2.7382 4.1911 16 16 -3.1365 -3.0475 5.7573 17 6 -4.3360 -1.7575 5.7125 18 1 -4.3685 -1.0794 4.8725 19 6 -5.2396 -1.6134 6.7561 20 7 -5.2002 -2.4402 7.7796 21 14 -6.5107 -0.2454 6.7089 22 1 -6.3454 0.5409 5.4601 23 1 -7.8733 -0.8344 6.7458 24 1 -6.3241 0.6444 7.8830 25 6 2.5778 -5.3859 1.2820 26 6 2.7542 -6.1278 -0.0444 27 6 2.2845 -6.8852 1.1999 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8896 -0.5143 31 1 2.0576 2.1094 0.0004 32 1 1.0279 -2.6832 -0.5222 33 1 2.7456 -3.1497 -0.5263 34 1 1.2488 -2.4464 1.9109 35 1 0.2349 -5.7024 2.7209 36 1 1.3719 -4.6161 3.5548 37 1 -0.5594 -3.0369 2.2308 38 1 -1.8566 -1.7354 4.2022 39 1 -2.9931 -2.8219 3.3679 40 1 -5.8315 -2.3394 8.5091 41 1 3.4801 -5.0777 1.8102 42 1 2.0194 -5.9403 -0.8275 43 1 3.7726 -6.3080 -0.3887 44 1 2.9940 -7.5635 1.6739 45 1 1.2405 -7.1965 1.2361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266398494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:17 Heat of formation + Delta-G solvation = 49.016380 kcal Electronic energy + Delta-G solvation = -26479.729824 eV Core-core repulsion = 22627.698419 eV Total energy + Delta-G solvation = -3852.031405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.22495 -39.72046 -38.43198 -36.38242 -35.05684 -33.74687 -32.46104 -32.38521 -30.31462 -28.61898 -28.29056 -25.80397 -25.46511 -23.58292 -22.53177 -21.93344 -21.52740 -20.59298 -20.16532 -18.05435 -17.86843 -17.70407 -16.60255 -16.52011 -16.12502 -15.65014 -15.34802 -14.84312 -14.81834 -14.57931 -14.39740 -14.06257 -13.77687 -13.65611 -13.40062 -13.17375 -13.11406 -12.69036 -12.61463 -12.40825 -12.11311 -11.86602 -11.78383 -11.62336 -11.35237 -11.09860 -11.05333 -10.79501 -10.60543 -10.44094 -10.21023 -9.83816 -9.67273 -9.46747 -9.11142 -8.98870 -8.90769 -8.26659 -6.53324 -6.24718 -3.95535 1.20663 1.82324 2.93411 2.96828 3.03336 3.19054 3.24283 3.28635 3.45099 3.65453 3.68262 3.87238 4.16947 4.17026 4.46579 4.51529 4.57521 4.69893 4.76503 4.81901 4.88930 4.94821 5.10595 5.10742 5.19969 5.24141 5.27830 5.34682 5.36834 5.41262 5.43392 5.51470 5.58513 5.63375 5.81459 5.82550 5.84100 5.88303 5.95610 6.07054 6.46605 6.54232 6.90796 7.55084 7.57151 7.98684 8.32038 8.53204 9.20668 10.82738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.002769 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.932678 B =10109.130073 C =12563.046214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.198 4.198 3 C -0.064 4.064 4 O 0.102 5.898 5 N -0.345 5.345 6 C 0.016 3.984 7 C 0.140 3.860 8 N -0.676 5.676 9 C 0.111 3.889 10 H 0.055 0.945 11 C 0.121 3.879 12 N -0.743 5.743 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.137 4.137 26 C -0.181 4.181 27 C -0.176 4.176 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.216 0.784 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.348 0.652 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.864 1.913 -21.177 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.202 4.202 3 C -0.145 4.145 4 O 0.034 5.966 5 N -0.047 5.047 6 C -0.143 4.143 7 C 0.010 3.990 8 N -0.311 5.311 9 C 0.002 3.998 10 H 0.073 0.927 11 C -0.003 4.003 12 N -0.399 5.399 13 C 0.319 3.681 14 O -0.385 6.385 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.156 4.156 26 C -0.218 4.218 27 C -0.214 4.214 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.225 0.775 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.985 -0.303 -19.522 25.879 hybrid contribution -2.821 2.598 -1.576 4.146 sum 14.165 2.296 -21.098 25.516 Atomic orbital electron populations 1.20163 0.87226 1.03351 1.03249 1.21389 0.98747 0.91741 1.08331 1.25794 0.83131 1.01236 1.04357 1.84844 1.29144 1.15621 1.66959 1.73865 1.22290 0.91109 1.17461 1.23316 0.88686 0.97943 1.04402 1.20208 1.00776 0.87184 0.90784 1.60341 1.56589 1.02705 1.11440 1.21306 0.93701 0.87921 0.96920 0.92737 1.21438 0.89122 0.93059 0.96707 1.46054 1.35435 1.34776 1.23657 1.20302 0.81892 0.85320 0.80578 1.90717 1.69274 1.37056 1.41465 1.23533 0.98999 1.00255 1.07638 1.85444 1.37754 1.43193 1.16826 1.22894 1.18994 1.17103 1.09378 0.90900 1.24994 0.97278 0.96778 0.94547 1.70024 1.36040 1.35896 1.08244 0.86116 0.80359 0.80802 0.78210 1.19631 1.20566 1.20545 1.22191 0.99972 0.92203 1.01248 1.23017 1.02476 1.04913 0.91410 1.22985 1.02622 0.94082 1.01662 0.90301 0.90698 0.91102 0.76774 0.92797 0.88892 0.83143 0.90555 0.90362 0.77513 0.89249 0.89292 0.92201 0.86676 0.89092 0.88785 0.88451 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.37 36.00 0.37 -0.11 16 2 C -0.20 -1.57 6.32 -104.42 -0.66 -2.23 16 3 C -0.06 -0.45 12.26 29.74 0.36 -0.09 16 4 O 0.10 1.01 11.20 17.18 0.19 1.20 16 5 N -0.35 -3.97 12.07 33.42 0.40 -3.57 16 6 C 0.02 0.16 6.80 -82.10 -0.56 -0.40 16 7 C 0.14 1.16 6.03 -4.97 -0.03 1.13 16 8 N -0.68 -6.18 6.32 -108.00 -0.68 -6.86 16 9 C 0.11 0.96 2.40 -67.71 -0.16 0.80 16 10 H 0.05 0.43 7.51 -51.93 -0.39 0.04 16 11 C 0.12 1.38 5.13 -4.04 -0.02 1.36 16 12 N -0.74 -9.30 4.98 -60.29 -0.30 -9.60 16 13 C 0.53 9.58 7.85 -10.98 -0.09 9.50 16 14 O -0.51 -11.41 15.86 5.56 0.09 -11.32 16 15 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 21 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.14 -1.15 5.28 -90.62 -0.48 -1.63 16 26 C -0.18 -1.30 10.18 -26.70 -0.27 -1.58 16 27 C -0.18 -1.36 9.87 -26.70 -0.26 -1.62 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.22 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.05 0.36 7.47 -51.93 -0.39 -0.03 16 33 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.35 3.29 6.66 -39.29 -0.26 3.03 16 35 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.39 3.74 7.39 -40.82 -0.30 3.44 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.75 7.92 -51.93 -0.41 0.33 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -35.16 396.58 -8.94 -44.09 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.74 Total: 3.30 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.37 Total: -10.33 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.15 Total: -45.16 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.28 Total: -10.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.16 -8.94 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.111 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds