Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35453 * 128.01078 * 2 1 4 4 O 1.34039 * 106.44620 * 180.02562 * 3 2 1 5 5 N 1.20922 * 111.57056 * 0.02562 * 4 3 2 6 6 C 1.30170 * 111.60262 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.80257 * 179.73140 * 6 5 4 8 8 N 1.46901 * 109.46870 * 90.02467 * 7 6 5 9 9 C 1.46897 * 111.00113 * 176.17276 * 8 7 6 10 10 H 1.08996 * 109.46946 * 325.93947 * 9 8 7 11 11 C 1.53001 * 109.47178 * 205.94200 * 9 8 7 12 12 N 1.46498 * 109.47172 * 54.99859 * 11 9 8 13 13 C 1.34780 * 119.99955 * 179.97438 * 12 11 9 14 14 O 1.21278 * 120.00337 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99703 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46644 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99888 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99387 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00249 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46801 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46756 * 120.00153 * 21 19 17 24 24 H 1.48492 * 109.47284 * 240.00319 * 21 19 17 25 25 C 1.52998 * 109.47441 * 85.94278 * 9 8 7 26 26 C 1.52999 * 117.49943 * 252.75298 * 25 9 8 27 27 C 1.52995 * 117.50265 * 184.09521 * 25 9 8 28 28 H 1.09005 * 109.46935 * 269.97263 * 1 2 3 29 29 H 1.09007 * 109.47036 * 29.96933 * 1 2 3 30 30 H 1.08998 * 109.47696 * 149.96844 * 1 2 3 31 31 H 1.08004 * 126.77295 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47467 * 210.02186 * 7 6 5 33 33 H 1.08996 * 109.47305 * 330.02574 * 7 6 5 34 34 H 1.00900 * 111.00288 * 52.21703 * 8 7 6 35 35 H 1.09005 * 109.47054 * 174.99960 * 11 9 8 36 36 H 1.08996 * 109.47207 * 294.99997 * 11 9 8 37 37 H 0.96998 * 120.00368 * 0.02562 * 12 11 9 38 38 H 1.08997 * 109.46897 * 300.00027 * 15 13 12 39 39 H 1.08996 * 109.47141 * 60.00182 * 15 13 12 40 40 H 0.97000 * 120.00304 * 179.97438 * 20 19 17 41 41 H 1.09007 * 115.54593 * 38.41975 * 25 9 8 42 42 H 1.09005 * 117.49715 * 0.02562 * 26 25 9 43 43 H 1.09003 * 117.49706 * 145.01537 * 26 25 9 44 44 H 1.08999 * 117.49894 * 214.98298 * 27 25 9 45 45 H 1.09000 * 117.49730 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0672 0.0000 4 8 3.5876 0.5746 -0.0006 5 7 3.5877 -0.6347 -0.0014 6 6 2.3775 -1.1140 -0.0021 7 6 1.9825 -2.5683 -0.0088 8 7 1.8557 -3.0477 1.3740 9 6 1.3833 -4.4382 1.4079 10 1 0.6954 -4.6085 0.5798 11 6 0.6622 -4.6997 2.7318 12 7 -0.4079 -3.7148 2.9079 13 6 -1.1825 -3.7511 4.0103 14 8 -0.9933 -4.5988 4.8567 15 6 -2.2836 -2.7382 4.1911 16 16 -3.1365 -3.0475 5.7573 17 6 -4.3360 -1.7575 5.7125 18 1 -4.3685 -1.0794 4.8725 19 6 -5.2396 -1.6134 6.7561 20 7 -5.2002 -2.4402 7.7796 21 14 -6.5107 -0.2454 6.7089 22 1 -6.3454 0.5409 5.4601 23 1 -7.8733 -0.8344 6.7458 24 1 -6.3241 0.6444 7.8830 25 6 2.5778 -5.3859 1.2820 26 6 2.7542 -6.1278 -0.0444 27 6 2.2845 -6.8852 1.1999 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8896 -0.5143 31 1 2.0576 2.1094 0.0004 32 1 1.0279 -2.6832 -0.5222 33 1 2.7456 -3.1497 -0.5263 34 1 1.2488 -2.4464 1.9109 35 1 0.2349 -5.7024 2.7209 36 1 1.3719 -4.6161 3.5548 37 1 -0.5594 -3.0369 2.2308 38 1 -1.8566 -1.7354 4.2022 39 1 -2.9931 -2.8219 3.3679 40 1 -5.8315 -2.3394 8.5091 41 1 3.4801 -5.0777 1.8102 42 1 2.0194 -5.9403 -0.8275 43 1 3.7726 -6.3080 -0.3887 44 1 2.9940 -7.5635 1.6739 45 1 1.2405 -7.1965 1.2361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266398494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = 24.315022 kcal Electronic energy + Delta-G solvation = -26480.800955 eV Core-core repulsion = 22627.698419 eV Total energy + Delta-G solvation = -3853.102536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.88990 -40.89052 -39.42290 -37.02845 -36.00033 -34.61557 -34.55589 -33.10883 -31.56495 -29.59814 -28.91733 -27.66174 -26.51221 -24.42482 -23.15453 -22.54977 -22.17353 -21.79574 -21.02521 -19.84822 -18.56602 -18.49442 -17.89763 -17.41660 -17.18602 -16.86753 -16.58497 -16.40468 -15.95008 -15.54944 -15.27765 -15.11563 -14.68977 -14.55687 -14.32396 -14.17767 -14.03064 -13.94700 -13.41343 -13.19848 -13.14391 -12.97590 -12.90246 -12.85906 -12.60612 -12.41832 -12.33292 -11.97317 -11.70285 -11.23163 -11.15673 -11.14720 -11.00784 -10.82111 -10.25091 -10.23837 -10.20482 -9.58261 -8.65298 -8.33345 -6.11252 0.61208 1.19497 1.27504 1.42825 1.48176 1.58633 1.59231 2.18245 2.28657 2.44697 2.83571 2.99238 3.01275 3.24095 3.32367 3.57254 3.73288 3.87492 3.98209 4.01506 4.06883 4.12511 4.17360 4.28761 4.30626 4.35918 4.50848 4.53158 4.58029 4.68578 4.77122 4.81442 4.84251 4.90760 4.94002 4.99231 5.04708 5.26815 5.28185 5.32798 5.36517 5.43833 5.85060 6.18179 6.21532 6.39158 7.08320 7.18891 7.35974 8.76043 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.002769 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.932678 B =10109.130073 C =12563.046214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.208 4.208 3 C -0.057 4.057 4 O 0.087 5.913 5 N -0.384 5.384 6 C 0.005 3.995 7 C 0.143 3.857 8 N -0.685 5.685 9 C 0.126 3.874 10 H 0.074 0.926 11 C 0.124 3.876 12 N -0.715 5.715 13 C 0.535 3.465 14 O -0.562 6.562 15 C -0.128 4.128 16 S -0.154 6.154 17 C -0.543 4.543 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.149 4.149 26 C -0.168 4.168 27 C -0.179 4.179 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.345 0.655 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.270 0.730 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.049 3.648 -23.788 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.213 4.213 3 C -0.138 4.138 4 O 0.022 5.978 5 N -0.089 5.089 6 C -0.154 4.154 7 C 0.014 3.986 8 N -0.321 5.321 9 C 0.017 3.983 10 H 0.091 0.909 11 C 0.000 4.000 12 N -0.370 5.370 13 C 0.321 3.679 14 O -0.440 6.440 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.691 4.691 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.177 1.177 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.168 4.168 26 C -0.205 4.205 27 C -0.216 4.216 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.269 0.731 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.202 1.461 -22.199 27.522 hybrid contribution -2.450 2.050 -0.853 3.306 sum 13.752 3.511 -23.052 27.071 Atomic orbital electron populations 1.20240 0.85630 1.04528 1.03487 1.21711 0.99824 0.91237 1.08506 1.26568 0.81956 1.02822 1.02443 1.84794 1.30581 1.15227 1.67244 1.73860 1.23654 0.91966 1.19439 1.23675 0.88751 0.98987 1.03969 1.20230 1.01643 0.86466 0.90219 1.60309 1.56790 1.02736 1.12244 1.21169 0.93752 0.87859 0.95551 0.90864 1.21486 0.88273 0.92511 0.97762 1.45723 1.34124 1.34928 1.22208 1.20090 0.82047 0.84426 0.81289 1.90709 1.70714 1.38952 1.43593 1.23363 0.99261 1.01737 1.03598 1.85660 1.39554 1.44449 1.22994 1.23234 1.18953 1.17014 1.09857 0.89669 1.26131 0.99665 0.99497 0.93962 1.70193 1.37300 1.38161 1.09242 0.84906 0.76953 0.77213 0.78887 1.17716 1.20102 1.20147 1.22113 0.99386 0.92662 1.02636 1.23074 1.03089 1.03284 0.91007 1.23034 1.02826 0.93538 1.02209 0.90399 0.89213 0.90345 0.73090 0.90547 0.89455 0.83396 0.90833 0.92262 0.75264 0.87036 0.86902 0.92068 0.88176 0.87914 0.88323 0.88292 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.37 71.23 0.74 0.04 16 2 C -0.21 -2.85 6.32 -19.74 -0.12 -2.97 16 3 C -0.06 -0.69 12.26 67.18 0.82 0.13 16 4 O 0.09 1.66 11.20 71.64 0.80 2.46 16 5 N -0.38 -8.69 12.07 -49.57 -0.60 -9.29 16 6 C 0.01 0.10 6.80 43.58 0.30 0.39 16 7 C 0.14 2.11 6.03 85.56 0.52 2.62 16 8 N -0.69 -11.45 6.32 -495.59 -3.13 -14.58 16 9 C 0.13 1.96 2.40 44.92 0.11 2.07 16 10 H 0.07 0.91 7.51 -2.39 -0.02 0.89 16 11 C 0.12 2.69 5.13 86.38 0.44 3.14 16 12 N -0.71 -16.58 4.98 -463.05 -2.31 -18.89 16 13 C 0.54 18.83 7.85 87.66 0.69 19.52 16 14 O -0.56 -25.53 15.86 -3.02 -0.05 -25.58 16 15 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 16 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 17 C -0.54 -30.14 9.50 67.95 0.65 -29.50 16 18 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 21 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 25 C -0.15 -2.35 5.28 -10.80 -0.06 -2.41 16 26 C -0.17 -2.09 10.18 30.62 0.31 -1.78 16 27 C -0.18 -2.54 9.87 30.61 0.30 -2.24 16 28 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.08 0.55 7.65 -2.39 -0.02 0.53 16 31 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.08 0.77 7.47 -2.39 -0.02 0.75 16 33 H 0.09 1.39 8.11 -2.39 -0.02 1.37 16 34 H 0.35 5.87 6.66 -89.69 -0.60 5.27 16 35 H 0.07 1.70 7.75 -2.38 -0.02 1.68 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 6.59 7.39 -92.71 -0.69 5.90 16 38 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 39 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.10 1.06 8.07 -2.38 -0.02 1.04 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.10 1.37 7.92 -2.39 -0.02 1.35 16 Total: -1.00 -79.47 396.58 1.20 -78.27 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.26 Total: 21.86 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 5.60 Total: -14.20 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -5.75 Total: -97.91 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.75 Total: -23.12 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -79.47 1.20 -78.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.583 kcal (2) G-P(sol) polarization free energy of solvation -79.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds