Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34333 * 126.44503 * 2 1 4 4 N 1.34471 * 107.67244 * 180.02562 * 3 2 1 5 5 C 1.30259 * 108.70013 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.61926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47309 * 90.02250 * 6 5 4 8 8 C 1.46847 * 111.00030 * 293.95381 * 7 6 5 9 9 C 1.53034 * 109.52326 * 174.16117 * 8 7 6 10 10 C 1.53117 * 109.28010 * 59.17583 * 9 8 7 11 11 C 1.53119 * 109.16519 * 302.34814 * 10 9 8 12 12 H 1.09004 * 109.50124 * 297.67309 * 11 10 9 13 13 N 1.46498 * 109.50817 * 177.59204 * 11 10 9 14 14 C 1.34777 * 119.99828 * 84.72111 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00053 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47356 * 89.99148 * 22 20 18 24 24 H 1.48497 * 109.47342 * 209.99750 * 22 20 18 25 25 H 1.48505 * 109.46847 * 329.99403 * 22 20 18 26 26 C 1.46855 * 111.00079 * 169.74292 * 7 6 5 27 27 O 1.33967 * 108.76190 * 0.22691 * 5 4 3 28 28 H 1.08999 * 109.47138 * 89.97465 * 1 2 3 29 29 H 1.08994 * 109.46637 * 209.97210 * 1 2 3 30 30 H 1.08998 * 109.46706 * 329.96725 * 1 2 3 31 31 H 1.07994 * 126.16112 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47396 * 330.01898 * 6 5 4 33 33 H 1.08998 * 109.47006 * 210.02309 * 6 5 4 34 34 H 1.08991 * 109.45838 * 54.14472 * 8 7 6 35 35 H 1.09004 * 109.44966 * 294.16920 * 8 7 6 36 36 H 1.08999 * 109.50313 * 299.23815 * 9 8 7 37 37 H 1.08993 * 109.53842 * 179.13986 * 9 8 7 38 38 H 1.08999 * 109.52842 * 182.43981 * 10 9 8 39 39 H 1.09004 * 109.57425 * 62.28323 * 10 9 8 40 40 H 0.97001 * 120.00384 * 265.00558 * 13 11 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 42 42 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 43 43 H 0.97000 * 120.00636 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46027 * 65.82420 * 26 7 6 45 45 H 1.09006 * 109.46257 * 305.85734 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.0806 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 7 5.1988 -1.8210 1.3816 8 6 5.6463 -0.6004 2.0644 9 6 5.9137 -0.9082 3.5394 10 6 6.9866 -1.9957 3.6425 11 6 6.5167 -3.2391 2.8826 12 1 5.6078 -3.6256 3.3438 13 7 7.5622 -4.2643 2.9278 14 6 7.6460 -5.0951 3.9858 15 8 6.8528 -4.9973 4.8980 16 6 8.7254 -6.1456 4.0353 17 16 8.5740 -7.0945 5.5692 18 6 9.9174 -8.2167 5.3686 19 1 10.5346 -8.1676 4.4837 20 6 10.1832 -9.1633 6.3484 21 7 11.1871 -10.0013 6.1988 22 14 9.1162 -9.2478 7.8793 23 1 7.9814 -10.1756 7.6412 24 1 9.9272 -9.7406 9.0214 25 1 8.5915 -7.8943 8.1924 26 6 6.2319 -2.8638 1.4266 27 8 2.3076 -1.0840 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3632 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 1.9822 2.1112 -0.0004 32 1 5.6146 -1.0227 -0.5166 33 1 4.5761 -2.4682 -0.5176 34 1 4.8726 0.1633 1.9871 35 1 6.5622 -0.2382 1.5971 36 1 4.9950 -1.2576 4.0105 37 1 6.2605 -0.0059 4.0430 38 1 7.1492 -2.2489 4.6902 39 1 7.9175 -1.6327 3.2069 40 1 8.1967 -4.3426 2.1983 41 1 8.6196 -6.8156 3.1821 42 1 9.7027 -5.6643 4.0003 43 1 11.3726 -10.6631 6.8833 44 1 7.1449 -2.4907 0.9624 45 1 5.8834 -3.7439 0.8861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267621016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -12.757083 kcal Electronic energy + Delta-G solvation = -26243.895297 eV Core-core repulsion = 22389.185194 eV Total energy + Delta-G solvation = -3854.710103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.68597 -40.05131 -38.59041 -35.34277 -34.89240 -33.44448 -32.54779 -32.43606 -30.63904 -29.12325 -28.15172 -25.96674 -25.60893 -23.56867 -23.11980 -22.52849 -21.27280 -20.39509 -20.13317 -17.91086 -17.42251 -17.31142 -16.46089 -16.41746 -15.64130 -15.36365 -15.15696 -15.03584 -14.90211 -14.73703 -14.32538 -13.96542 -13.81292 -13.75368 -13.48305 -13.30922 -13.17676 -12.94612 -12.80397 -12.78918 -12.33638 -12.11287 -11.71905 -11.56888 -11.26854 -11.11269 -11.02177 -10.98440 -10.90143 -10.75663 -10.57852 -9.85334 -9.50817 -9.13125 -9.02502 -8.97333 -8.80936 -8.49623 -6.91375 -6.28705 -4.00354 1.02706 2.18044 2.29971 2.73976 2.97312 3.17997 3.33591 3.49113 3.51305 3.67121 3.80175 4.31680 4.33509 4.42621 4.55955 4.60107 4.62057 4.74473 4.78018 4.79782 4.91241 4.97785 5.01815 5.03470 5.10427 5.13743 5.21061 5.28031 5.40447 5.44109 5.47730 5.62120 5.67311 5.69048 5.77366 5.87775 5.91406 6.01316 6.09696 6.16013 6.40822 6.50436 6.66631 7.36361 7.60798 7.94272 8.41724 8.49933 9.17533 10.80480 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.001845 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.882737 B =15169.271302 C =15372.954674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.046 4.046 4 N -0.478 5.478 5 C 0.200 3.800 6 C 0.151 3.849 7 N -0.533 5.533 8 C 0.051 3.949 9 C -0.113 4.113 10 C -0.133 4.133 11 C 0.152 3.848 12 H 0.098 0.902 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.053 3.947 27 O -0.192 6.192 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.182 0.818 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.398 0.602 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.045 0.955 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 23.152 -16.417 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C -0.184 4.184 4 N -0.207 5.207 5 C -0.007 4.007 6 C 0.023 3.977 7 N -0.259 5.259 8 C -0.076 4.076 9 C -0.151 4.151 10 C -0.172 4.172 11 C 0.047 3.953 12 H 0.116 0.884 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.075 4.075 27 O -0.078 6.078 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.074 23.279 -14.573 32.878 hybrid contribution 1.067 -0.407 -1.195 1.653 sum -17.007 22.872 -15.768 32.573 Atomic orbital electron populations 1.20289 0.83970 1.04574 1.03785 1.23531 0.95161 0.84616 1.06613 1.23056 0.87769 1.00345 1.07267 1.70433 1.23231 1.09149 1.17933 1.25904 0.84232 0.89904 1.00630 1.20320 0.88712 0.97559 0.91139 1.61697 1.40699 1.09992 1.13493 1.22263 0.99617 0.91090 0.94658 1.21531 0.99695 0.98735 0.95167 1.22016 0.98302 0.94862 1.02016 1.20789 0.92209 0.87942 0.94408 0.88418 1.45951 1.34200 1.35196 1.23380 1.20261 0.85280 0.81087 0.81448 1.90706 1.41683 1.70458 1.36176 1.23283 0.99886 0.99145 1.05162 1.84800 1.44282 1.40356 1.22065 1.22321 1.15350 1.18690 1.10569 0.89399 1.24713 0.94671 0.93960 0.97966 1.69935 1.28031 1.18695 1.35031 0.86734 0.80956 0.81428 0.82735 1.19202 1.19957 1.15917 1.22281 0.93157 0.94950 0.97074 1.84414 1.17732 1.36432 1.69230 0.89794 0.90150 0.88919 0.80044 0.90049 0.87582 0.89886 0.94153 0.90863 0.90962 0.90636 0.91963 0.76817 0.88497 0.88484 0.91950 0.93669 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.10 16 2 C -0.05 -0.37 7.39 -35.68 -0.26 -0.63 16 3 C -0.05 -0.38 11.80 -17.77 -0.21 -0.59 16 4 N -0.48 -4.95 10.39 -11.10 -0.12 -5.06 16 5 C 0.20 1.96 6.99 -12.95 -0.09 1.87 16 6 C 0.15 1.15 5.59 -4.98 -0.03 1.12 16 7 N -0.53 -4.74 4.65 -236.12 -1.10 -5.84 16 8 C 0.05 0.46 5.31 -3.84 -0.02 0.44 16 9 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 10 C -0.13 -1.45 5.57 -26.61 -0.15 -1.60 16 11 C 0.15 1.71 2.61 -67.85 -0.18 1.53 16 12 H 0.10 1.37 7.59 -51.93 -0.39 0.98 16 13 N -0.73 -8.91 5.08 -53.73 -0.27 -9.18 16 14 C 0.53 9.22 7.81 -10.98 -0.09 9.14 16 15 O -0.52 -10.97 15.53 5.55 0.09 -10.88 16 16 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 22 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 C 0.05 0.44 4.93 -3.83 -0.02 0.42 16 27 O -0.19 -1.96 10.78 5.35 0.06 -1.90 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.11 0.63 7.98 -51.93 -0.41 0.21 16 34 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.65 8.01 -51.93 -0.42 0.24 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -35.72 384.55 -8.85 -44.57 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.98 Total: 0.30 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.39 Total: -3.57 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.71 Total: -45.84 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.14 Total: -12.79 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.72 -8.85 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267621016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.814 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds