Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34333 * 126.44503 * 2 1 4 4 N 1.34471 * 107.67244 * 180.02562 * 3 2 1 5 5 C 1.30259 * 108.70013 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.61926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47309 * 90.02250 * 6 5 4 8 8 C 1.46847 * 111.00030 * 293.95381 * 7 6 5 9 9 C 1.53034 * 109.52326 * 174.16117 * 8 7 6 10 10 C 1.53117 * 109.28010 * 59.17583 * 9 8 7 11 11 C 1.53119 * 109.16519 * 302.34814 * 10 9 8 12 12 H 1.09004 * 109.50124 * 297.67309 * 11 10 9 13 13 N 1.46498 * 109.50817 * 177.59204 * 11 10 9 14 14 C 1.34777 * 119.99828 * 84.72111 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00053 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47356 * 89.99148 * 22 20 18 24 24 H 1.48497 * 109.47342 * 209.99750 * 22 20 18 25 25 H 1.48505 * 109.46847 * 329.99403 * 22 20 18 26 26 C 1.46855 * 111.00079 * 169.74292 * 7 6 5 27 27 O 1.33967 * 108.76190 * 0.22691 * 5 4 3 28 28 H 1.08999 * 109.47138 * 89.97465 * 1 2 3 29 29 H 1.08994 * 109.46637 * 209.97210 * 1 2 3 30 30 H 1.08998 * 109.46706 * 329.96725 * 1 2 3 31 31 H 1.07994 * 126.16112 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47396 * 330.01898 * 6 5 4 33 33 H 1.08998 * 109.47006 * 210.02309 * 6 5 4 34 34 H 1.08991 * 109.45838 * 54.14472 * 8 7 6 35 35 H 1.09004 * 109.44966 * 294.16920 * 8 7 6 36 36 H 1.08999 * 109.50313 * 299.23815 * 9 8 7 37 37 H 1.08993 * 109.53842 * 179.13986 * 9 8 7 38 38 H 1.08999 * 109.52842 * 182.43981 * 10 9 8 39 39 H 1.09004 * 109.57425 * 62.28323 * 10 9 8 40 40 H 0.97001 * 120.00384 * 265.00558 * 13 11 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 42 42 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 43 43 H 0.97000 * 120.00636 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46027 * 65.82420 * 26 7 6 45 45 H 1.09006 * 109.46257 * 305.85734 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.0806 0.0000 4 7 3.5782 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 7 5.1988 -1.8210 1.3816 8 6 5.6463 -0.6004 2.0644 9 6 5.9137 -0.9082 3.5394 10 6 6.9866 -1.9957 3.6425 11 6 6.5167 -3.2391 2.8826 12 1 5.6078 -3.6256 3.3438 13 7 7.5622 -4.2643 2.9278 14 6 7.6460 -5.0951 3.9858 15 8 6.8528 -4.9973 4.8980 16 6 8.7254 -6.1456 4.0353 17 16 8.5740 -7.0945 5.5692 18 6 9.9174 -8.2167 5.3686 19 1 10.5346 -8.1676 4.4837 20 6 10.1832 -9.1633 6.3484 21 7 11.1871 -10.0013 6.1988 22 14 9.1162 -9.2478 7.8793 23 1 7.9814 -10.1756 7.6412 24 1 9.9272 -9.7406 9.0214 25 1 8.5915 -7.8943 8.1924 26 6 6.2319 -2.8638 1.4266 27 8 2.3076 -1.0840 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3632 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 1.9822 2.1112 -0.0004 32 1 5.6146 -1.0227 -0.5166 33 1 4.5761 -2.4682 -0.5176 34 1 4.8726 0.1633 1.9871 35 1 6.5622 -0.2382 1.5971 36 1 4.9950 -1.2576 4.0105 37 1 6.2605 -0.0059 4.0430 38 1 7.1492 -2.2489 4.6902 39 1 7.9175 -1.6327 3.2069 40 1 8.1967 -4.3426 2.1983 41 1 8.6196 -6.8156 3.1821 42 1 9.7027 -5.6643 4.0003 43 1 11.3726 -10.6631 6.8833 44 1 7.1449 -2.4907 0.9624 45 1 5.8834 -3.7439 0.8861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267621016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -40.751570 kcal Electronic energy + Delta-G solvation = -26245.109229 eV Core-core repulsion = 22389.185194 eV Total energy + Delta-G solvation = -3855.924035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.31967 -41.11529 -39.64543 -36.25953 -35.64535 -34.66657 -34.31319 -33.12269 -31.80374 -29.95824 -29.12299 -27.83307 -26.54282 -24.30321 -23.99258 -23.15558 -22.00460 -21.58779 -21.00798 -19.84812 -18.18962 -18.03975 -17.80266 -17.36120 -17.07398 -16.53673 -16.38420 -16.03255 -15.85052 -15.70067 -15.33373 -15.03302 -14.89162 -14.77478 -14.61218 -14.37109 -13.88178 -13.81743 -13.71377 -13.56011 -13.33897 -13.23813 -13.01373 -12.89612 -12.64980 -12.47041 -12.34328 -11.91996 -11.88282 -11.83925 -11.64309 -11.52775 -11.16578 -10.95951 -10.51961 -10.12890 -9.71424 -9.44237 -8.98525 -8.50960 -6.21371 0.40626 0.99487 1.31593 1.46406 1.52648 1.57992 1.61943 1.72418 2.16520 2.25720 2.70449 2.87343 2.90074 3.14417 3.62601 3.79170 3.83199 3.90262 3.98986 4.05927 4.09665 4.21551 4.26185 4.29904 4.34825 4.48903 4.51552 4.53749 4.56859 4.66863 4.68134 4.70193 4.84842 4.89553 5.03025 5.04867 5.19805 5.19941 5.27320 5.34084 5.43610 5.71419 5.83073 5.91758 6.12209 6.49535 6.72549 6.94486 7.22686 8.61287 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.001845 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.882737 B =15169.271302 C =15372.954674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.063 4.063 4 N -0.498 5.498 5 C 0.185 3.815 6 C 0.153 3.847 7 N -0.547 5.547 8 C 0.059 3.941 9 C -0.108 4.108 10 C -0.128 4.128 11 C 0.152 3.848 12 H 0.067 0.933 13 N -0.706 5.706 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.110 4.110 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.238 1.238 26 C 0.062 3.938 27 O -0.211 6.211 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.205 0.795 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.418 0.582 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.781 24.604 -17.887 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.201 4.201 4 N -0.228 5.228 5 C -0.022 4.022 6 C 0.025 3.975 7 N -0.274 5.274 8 C -0.068 4.068 9 C -0.146 4.146 10 C -0.167 4.167 11 C 0.047 3.953 12 H 0.085 0.915 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.261 4.261 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.162 1.162 26 C -0.065 4.065 27 O -0.098 6.098 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.222 0.778 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.853 24.754 -16.098 35.034 hybrid contribution 1.274 -0.738 -0.876 1.713 sum -17.579 24.015 -16.974 34.262 Atomic orbital electron populations 1.20488 0.81389 1.05539 1.05053 1.24276 0.96631 0.84050 1.05389 1.23512 0.87362 1.01634 1.07598 1.70411 1.24336 1.09641 1.18443 1.26348 0.84698 0.90151 1.00962 1.20449 0.88348 0.98302 0.90352 1.61605 1.41134 1.09989 1.14654 1.22135 0.99698 0.90998 0.93972 1.21479 0.98458 0.98661 0.96015 1.21943 0.99462 0.95037 1.00214 1.20830 0.90460 0.87316 0.96672 0.91486 1.45656 1.34326 1.33794 1.22213 1.19942 0.84310 0.81302 0.82080 1.90701 1.43251 1.71797 1.38182 1.23269 1.01621 0.99274 1.01945 1.84758 1.42783 1.40742 1.26909 1.22465 1.15940 1.19483 1.09670 0.91833 1.25546 0.95843 0.93754 1.00809 1.70011 1.29492 1.19561 1.36366 0.85880 0.79558 0.81279 0.79736 1.18731 1.18379 1.16174 1.22193 0.94266 0.95470 0.94621 1.84414 1.18283 1.37519 1.69571 0.88250 0.90229 0.86853 0.77848 0.88574 0.85915 0.91066 0.92925 0.92692 0.89883 0.93620 0.90220 0.74459 0.86644 0.86724 0.91398 0.91129 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.24 0.74 0.31 16 2 C -0.05 -0.76 7.39 24.79 0.18 -0.57 16 3 C -0.06 -0.99 11.80 83.40 0.98 -0.01 16 4 N -0.50 -9.86 10.39 -303.84 -3.16 -13.02 16 5 C 0.19 3.43 6.99 88.34 0.62 4.05 16 6 C 0.15 2.00 5.59 85.56 0.48 2.48 16 7 N -0.55 -8.69 4.65 -900.94 -4.19 -12.87 16 8 C 0.06 0.98 5.31 86.32 0.46 1.44 16 9 C -0.11 -2.00 6.09 30.64 0.19 -1.81 16 10 C -0.13 -2.64 5.57 30.67 0.17 -2.47 16 11 C 0.15 3.19 2.61 45.04 0.12 3.31 16 12 H 0.07 1.88 7.59 -2.38 -0.02 1.86 16 13 N -0.71 -15.61 5.08 -442.28 -2.25 -17.86 16 14 C 0.54 18.00 7.81 87.66 0.68 18.68 16 15 O -0.56 -23.94 15.53 -3.04 -0.05 -23.99 16 16 C -0.11 -4.03 6.16 71.24 0.44 -3.59 16 17 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 18 C -0.53 -30.60 10.04 67.96 0.68 -29.92 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 22 Si 0.91 45.14 27.74 68.60 1.90 47.05 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 26 C 0.06 0.85 4.93 86.32 0.43 1.27 16 27 O -0.21 -4.17 10.78 -3.77 -0.04 -4.21 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 33 H 0.12 1.14 7.98 -2.39 -0.02 1.12 16 34 H 0.07 1.38 6.43 -2.39 -0.02 1.36 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.42 6.12 8.60 -92.71 -0.80 5.32 16 41 H 0.12 3.82 8.14 -2.40 -0.02 3.81 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 1.15 8.01 -2.38 -0.02 1.14 16 Total: -1.00 -79.25 384.55 -1.72 -80.97 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.16 Total: 13.01 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.64 Total: -3.67 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -9.29 Total: -99.13 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.09 Total: -28.20 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -79.25 -1.72 -80.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267621016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.220 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds