Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32770 * 123.45895 * 2 1 4 4 S 1.75511 * 110.57446 * 180.23129 * 3 2 1 5 5 C 1.70448 * 92.44325 * 359.73753 * 4 3 2 6 6 C 1.36007 * 110.81662 * 0.02562 * 5 4 3 7 7 C 1.47199 * 123.45701 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99735 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99983 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47392 * 54.99840 * 11 10 9 13 13 C 1.53003 * 109.46945 * 294.99481 * 11 10 9 14 14 C 1.53006 * 109.47452 * 174.99751 * 11 10 9 15 15 N 1.46898 * 109.47138 * 184.99841 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46680 * 60.00313 * 24 22 20 26 26 H 1.48496 * 109.46939 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47298 * 300.00205 * 24 22 20 28 28 H 1.09003 * 109.47174 * 270.23696 * 1 2 3 29 29 H 1.09004 * 109.46930 * 30.23106 * 1 2 3 30 30 H 1.08994 * 109.47352 * 150.23502 * 1 2 3 31 31 H 1.07996 * 124.71322 * 359.93128 * 3 2 1 32 32 H 1.07998 * 124.58765 * 179.97438 * 5 4 3 33 33 H 0.97001 * 120.00253 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47613 * 59.99832 * 10 9 7 35 35 H 1.09003 * 109.47151 * 300.00236 * 10 9 7 36 36 H 1.08996 * 109.47132 * 299.99905 * 13 11 10 37 37 H 1.09000 * 109.46878 * 60.00403 * 13 11 10 38 38 H 1.08999 * 109.47096 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.46770 * 64.99788 * 14 11 10 40 40 H 1.08995 * 109.47019 * 305.00001 * 14 11 10 41 41 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 42 42 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 43 43 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 44 44 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 45 45 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0066 5 6 3.6410 -0.9599 -0.0015 6 6 2.3032 -1.2049 0.0043 7 6 1.7261 -2.5590 0.0092 8 8 0.5186 -2.7055 0.0139 9 7 2.5357 -3.6365 0.0085 10 6 1.9614 -4.9842 0.0128 11 6 3.0884 -6.0189 0.0116 12 1 3.7570 -5.8288 0.8510 13 6 3.8725 -5.9174 -1.2983 14 6 2.4926 -7.4222 0.1418 15 7 3.5774 -8.4056 0.2610 16 6 3.0417 -9.7676 0.3876 17 6 4.1812 -10.7465 0.5068 18 8 5.3268 -10.3486 0.4885 19 7 3.9272 -12.0640 0.6336 20 6 4.9639 -12.9545 0.7425 21 1 5.9840 -12.6004 0.7263 22 6 4.7021 -14.3128 0.8738 23 7 3.4608 -14.7438 0.8940 24 14 6.1146 -15.5263 1.0215 25 1 6.9244 -15.1993 2.2225 26 1 5.5730 -16.9030 1.1500 27 1 6.9691 -15.4411 -0.1900 28 1 -0.3634 0.0043 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.8374 2.1102 -0.0011 32 1 4.4043 -1.7240 -0.0036 33 1 3.4986 -3.5197 0.0051 34 1 1.3433 -5.1187 -0.8749 35 1 1.3491 -5.1154 0.9050 36 1 3.2038 -6.1076 -2.1377 37 1 4.2970 -4.9177 -1.3910 38 1 4.6752 -6.6548 -1.2993 39 1 1.8945 -7.6463 -0.7413 40 1 1.8615 -7.4680 1.0293 41 1 4.1846 -8.1821 1.0353 42 1 2.4141 -9.8300 1.2767 43 1 2.4475 -10.0077 -0.4941 44 1 3.0110 -12.3821 0.6485 45 1 3.2780 -15.6921 0.9853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267985890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -53.509684 kcal Electronic energy + Delta-G solvation = -25484.083079 eV Core-core repulsion = 21627.605810 eV Total energy + Delta-G solvation = -3856.477269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34312 -38.43170 -37.80428 -36.95523 -34.96995 -33.88751 -32.67973 -31.27469 -31.09640 -28.19200 -27.41831 -26.74707 -25.08615 -24.29317 -23.03024 -21.11521 -20.75837 -19.39529 -18.98017 -18.18033 -17.87437 -17.25945 -16.31774 -15.96962 -15.67902 -15.44097 -14.93886 -14.75992 -14.44580 -14.30529 -13.91468 -13.79376 -13.71177 -13.55629 -13.38121 -13.15209 -12.97518 -12.63631 -12.44655 -12.37438 -12.22309 -11.93962 -11.68607 -11.52227 -11.30830 -11.15741 -11.07858 -10.98398 -10.89777 -10.44661 -10.21838 -10.07241 -9.50421 -9.42805 -9.29619 -8.75267 -8.47067 -8.06554 -7.96248 -6.41896 -3.82915 0.32580 1.10701 1.48050 1.59498 2.85635 3.04162 3.19842 3.25618 3.29923 3.90608 4.08034 4.20526 4.29462 4.54424 4.68702 4.74032 4.80806 4.86106 4.95094 5.16158 5.17647 5.25134 5.26174 5.31838 5.44965 5.45433 5.56706 5.61267 5.65847 5.74397 5.84716 5.85860 5.86989 5.98042 6.03540 6.16646 6.23109 6.26431 6.37173 7.18275 7.18793 7.54608 7.63708 7.92749 8.05717 8.60916 9.17365 9.54005 10.05390 10.75702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.001482 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.871168 B =18891.701902 C =19568.138208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.050 4.050 3 C -0.246 4.246 4 S 0.186 5.814 5 C -0.211 4.211 6 C -0.152 4.152 7 C 0.576 3.424 8 O -0.533 6.533 9 N -0.721 5.721 10 C 0.125 3.875 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 30.809 -1.736 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.381 4.381 4 S 0.454 5.546 5 C -0.350 4.350 6 C -0.171 4.171 7 C 0.362 3.638 8 O -0.411 6.411 9 N -0.373 5.373 10 C 0.001 3.999 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.198 4.198 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.166 31.570 -2.413 31.820 hybrid contribution -0.977 -1.772 1.029 2.270 sum -4.143 29.798 -1.384 30.116 Atomic orbital electron populations 1.20665 0.88574 1.03773 1.02976 1.19881 0.97625 0.89817 0.98814 1.25339 0.96398 1.02722 1.13660 1.83083 1.05649 0.96647 1.69235 1.25676 0.99628 1.03049 1.06600 1.20187 0.92082 0.94395 1.10409 1.17573 0.86343 0.83541 0.76379 1.90755 1.14021 1.86450 1.49847 1.45867 1.10061 1.05970 1.75402 1.21424 0.95866 0.79881 1.02688 1.21348 0.96609 0.93924 1.00051 0.90534 1.21763 1.01030 1.01144 0.95827 1.21891 0.93249 0.90474 1.00801 1.60034 1.18425 1.00363 1.51011 1.21668 0.96412 0.89099 1.01014 1.19806 0.89857 0.83309 0.84421 1.90515 1.22231 1.78350 1.55768 1.41858 1.09745 1.04696 1.63691 1.19656 0.89455 0.86833 1.47103 0.87977 1.25265 0.97499 0.97839 0.97303 1.69607 1.18333 1.16152 1.50189 0.85910 0.80465 0.78733 0.79058 1.19941 1.20974 1.19885 0.90974 0.91876 0.88901 0.81393 0.81241 0.76596 0.90965 0.91258 0.92697 0.93844 0.90354 0.90678 0.95225 0.83256 0.93862 0.89574 0.77443 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.54 36.00 0.34 -0.50 16 2 C -0.05 -0.44 6.01 -104.07 -0.63 -1.06 16 3 C -0.25 -1.63 10.91 28.86 0.31 -1.32 16 4 S 0.19 1.04 23.02 -107.50 -2.48 -1.43 16 5 C -0.21 -1.41 10.38 29.93 0.31 -1.10 16 6 C -0.15 -1.39 5.98 -104.63 -0.63 -2.01 16 7 C 0.58 6.24 7.79 -12.62 -0.10 6.14 16 8 O -0.53 -7.36 14.21 5.25 0.07 -7.28 16 9 N -0.72 -6.29 5.25 -61.46 -0.32 -6.61 16 10 C 0.13 1.17 5.06 -4.05 -0.02 1.15 16 11 C -0.10 -0.95 2.57 -90.62 -0.23 -1.18 16 12 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.14 -1.38 8.95 37.16 0.33 -1.05 16 14 C 0.07 0.76 5.07 -3.82 -0.02 0.74 16 15 N -0.67 -10.19 5.58 -115.05 -0.64 -10.83 16 16 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 17 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 18 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 19 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 30 H 0.09 0.96 6.03 -51.93 -0.31 0.65 16 31 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.17 0.73 7.01 -52.49 -0.37 0.37 16 33 H 0.40 2.60 6.15 -40.82 -0.25 2.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.35 7.18 -51.93 -0.37 -0.03 16 38 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -33.02 389.87 -8.96 -41.98 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.52 Total: 13.17 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.68 Total: 2.86 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.30 Total: -55.54 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.02 -8.96 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.528 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds