Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32770 * 123.45895 * 2 1 4 4 S 1.75511 * 110.57446 * 180.23129 * 3 2 1 5 5 C 1.70448 * 92.44325 * 359.73753 * 4 3 2 6 6 C 1.36007 * 110.81662 * 0.02562 * 5 4 3 7 7 C 1.47199 * 123.45701 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99735 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99983 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47392 * 54.99840 * 11 10 9 13 13 C 1.53003 * 109.46945 * 294.99481 * 11 10 9 14 14 C 1.53006 * 109.47452 * 174.99751 * 11 10 9 15 15 N 1.46898 * 109.47138 * 184.99841 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46680 * 60.00313 * 24 22 20 26 26 H 1.48496 * 109.46939 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47298 * 300.00205 * 24 22 20 28 28 H 1.09003 * 109.47174 * 270.23696 * 1 2 3 29 29 H 1.09004 * 109.46930 * 30.23106 * 1 2 3 30 30 H 1.08994 * 109.47352 * 150.23502 * 1 2 3 31 31 H 1.07996 * 124.71322 * 359.93128 * 3 2 1 32 32 H 1.07998 * 124.58765 * 179.97438 * 5 4 3 33 33 H 0.97001 * 120.00253 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47613 * 59.99832 * 10 9 7 35 35 H 1.09003 * 109.47151 * 300.00236 * 10 9 7 36 36 H 1.08996 * 109.47132 * 299.99905 * 13 11 10 37 37 H 1.09000 * 109.46878 * 60.00403 * 13 11 10 38 38 H 1.08999 * 109.47096 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.46770 * 64.99788 * 14 11 10 40 40 H 1.08995 * 109.47019 * 305.00001 * 14 11 10 41 41 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 42 42 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 43 43 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 44 44 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 45 45 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0066 5 6 3.6410 -0.9599 -0.0015 6 6 2.3032 -1.2049 0.0043 7 6 1.7261 -2.5590 0.0092 8 8 0.5186 -2.7055 0.0139 9 7 2.5357 -3.6365 0.0085 10 6 1.9614 -4.9842 0.0128 11 6 3.0884 -6.0189 0.0116 12 1 3.7570 -5.8288 0.8510 13 6 3.8725 -5.9174 -1.2983 14 6 2.4926 -7.4222 0.1418 15 7 3.5774 -8.4056 0.2610 16 6 3.0417 -9.7676 0.3876 17 6 4.1812 -10.7465 0.5068 18 8 5.3268 -10.3486 0.4885 19 7 3.9272 -12.0640 0.6336 20 6 4.9639 -12.9545 0.7425 21 1 5.9840 -12.6004 0.7263 22 6 4.7021 -14.3128 0.8738 23 7 3.4608 -14.7438 0.8940 24 14 6.1146 -15.5263 1.0215 25 1 6.9244 -15.1993 2.2225 26 1 5.5730 -16.9030 1.1500 27 1 6.9691 -15.4411 -0.1900 28 1 -0.3634 0.0043 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.8374 2.1102 -0.0011 32 1 4.4043 -1.7240 -0.0036 33 1 3.4986 -3.5197 0.0051 34 1 1.3433 -5.1187 -0.8749 35 1 1.3491 -5.1154 0.9050 36 1 3.2038 -6.1076 -2.1377 37 1 4.2970 -4.9177 -1.3910 38 1 4.6752 -6.6548 -1.2993 39 1 1.8945 -7.6463 -0.7413 40 1 1.8615 -7.4680 1.0293 41 1 4.1846 -8.1821 1.0353 42 1 2.4141 -9.8300 1.2767 43 1 2.4475 -10.0077 -0.4941 44 1 3.0110 -12.3821 0.6485 45 1 3.2780 -15.6921 0.9853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267985890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -77.481939 kcal Electronic energy + Delta-G solvation = -25485.122594 eV Core-core repulsion = 21627.605810 eV Total energy + Delta-G solvation = -3857.516784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08853 -40.16461 -38.62995 -37.84624 -36.20167 -35.68297 -33.66808 -33.20645 -31.82164 -28.94598 -28.66995 -27.54869 -26.57693 -25.26715 -24.15642 -21.82577 -21.64379 -21.01370 -19.97369 -19.73196 -18.67620 -17.99897 -17.74019 -16.99406 -16.83785 -16.52260 -16.38671 -16.00869 -15.63632 -15.46318 -15.18048 -14.87037 -14.70353 -14.37257 -14.22700 -14.08856 -13.91281 -13.55666 -13.52037 -13.40062 -13.16812 -13.04611 -12.97930 -12.83065 -12.80189 -12.43013 -12.12720 -12.02316 -11.95611 -11.82790 -11.72510 -11.49523 -10.88212 -10.33947 -10.18562 -10.01348 -9.84990 -9.29942 -9.25048 -8.46157 -5.95186 -0.21851 0.63621 0.96592 0.97347 1.40358 1.42211 1.53223 2.05899 2.12322 2.30186 2.31315 2.95524 3.21147 3.52913 3.72464 3.85706 3.87541 4.03252 4.08539 4.20948 4.33237 4.39416 4.48097 4.49572 4.58511 4.62798 4.64534 4.70992 4.77570 4.81859 4.83416 4.96175 4.99659 5.06895 5.25004 5.29197 5.40935 5.41514 5.52244 5.57526 5.88620 6.10061 6.41782 6.50078 6.60362 7.12689 7.18742 7.56697 8.11715 8.70911 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.001482 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.871168 B =18891.701902 C =19568.138208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.079 4.079 3 C -0.247 4.247 4 S 0.237 5.763 5 C -0.208 4.208 6 C -0.183 4.183 7 C 0.572 3.428 8 O -0.573 6.573 9 N -0.711 5.711 10 C 0.133 3.867 11 C -0.087 4.087 12 H 0.084 0.916 13 C -0.136 4.136 14 C 0.067 3.933 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.345 0.655 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 32.137 -1.662 32.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.382 4.382 4 S 0.505 5.495 5 C -0.346 4.346 6 C -0.201 4.201 7 C 0.359 3.641 8 O -0.454 6.454 9 N -0.363 5.363 10 C 0.009 3.991 11 C -0.106 4.106 12 H 0.102 0.898 13 C -0.194 4.194 14 C -0.063 4.063 15 N -0.309 5.309 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.206 0.794 32 H 0.209 0.791 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.163 0.837 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.417 32.910 -2.343 33.082 hybrid contribution -1.159 -2.064 0.992 2.566 sum -3.576 30.846 -1.351 31.082 Atomic orbital electron populations 1.20575 0.89105 1.03322 1.02589 1.20003 0.97759 0.90535 1.00621 1.25646 0.97287 1.03136 1.12112 1.82962 1.04102 0.95039 1.67368 1.26016 0.99192 1.04773 1.04654 1.20134 0.93166 0.93579 1.13245 1.17927 0.86001 0.84563 0.75654 1.90733 1.15682 1.87083 1.51884 1.45755 1.10582 1.05326 1.74651 1.21268 0.95580 0.80142 1.02143 1.21203 0.96493 0.92744 1.00168 0.89776 1.21710 1.00222 1.01612 0.95838 1.21963 0.92407 0.90425 1.01480 1.60028 1.19798 1.00064 1.50998 1.21526 0.93962 0.88558 1.02745 1.20877 0.90997 0.83457 0.82130 1.90482 1.24497 1.78990 1.56914 1.41937 1.09380 1.05337 1.64437 1.19650 0.89327 0.88177 1.49409 0.90234 1.26049 1.00063 0.98868 0.96284 1.69671 1.19666 1.16807 1.49969 0.84977 0.77522 0.76846 0.78922 1.19657 1.19539 1.19730 0.91416 0.90089 0.91475 0.79382 0.79057 0.75191 0.91670 0.91772 0.93058 0.91815 0.92682 0.90316 0.94061 0.83680 0.91653 0.87947 0.77001 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.54 71.23 0.68 -0.98 16 2 C -0.08 -1.32 6.01 -19.47 -0.12 -1.44 16 3 C -0.25 -2.80 10.91 66.64 0.73 -2.07 16 4 S 0.24 2.00 23.02 -56.49 -1.30 0.70 16 5 C -0.21 -2.33 10.38 67.30 0.70 -1.63 16 6 C -0.18 -3.19 5.98 -19.87 -0.12 -3.31 16 7 C 0.57 12.35 7.79 86.60 0.67 13.03 16 8 O -0.57 -16.44 14.21 -4.15 -0.06 -16.50 16 9 N -0.71 -11.67 5.25 -466.61 -2.45 -14.12 16 10 C 0.13 2.36 5.06 86.38 0.44 2.80 16 11 C -0.09 -1.52 2.57 -10.79 -0.03 -1.55 16 12 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 13 C -0.14 -2.52 8.95 71.98 0.64 -1.87 16 14 C 0.07 1.42 5.07 86.31 0.44 1.86 16 15 N -0.68 -20.03 5.58 -517.92 -2.89 -22.92 16 16 C 0.06 2.16 6.17 85.56 0.53 2.69 16 17 C 0.44 20.66 7.82 87.66 0.69 21.34 16 18 O -0.62 -34.08 15.78 -3.06 -0.05 -34.13 16 19 N -0.57 -29.42 5.29 -306.99 -1.62 -31.05 16 20 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 0.99 8.13 -2.39 -0.02 0.98 16 30 H 0.07 1.50 6.03 -2.39 -0.01 1.49 16 31 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.19 1.09 7.01 -2.91 -0.02 1.07 16 33 H 0.41 4.57 6.15 -92.71 -0.57 4.00 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.90 7.18 -2.39 -0.02 0.88 16 38 H 0.05 1.30 7.75 -2.39 -0.02 1.28 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 41 H 0.34 10.64 8.43 -89.69 -0.76 9.88 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 45 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -72.89 389.87 -0.55 -73.44 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -1.02 Total: 38.79 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.53 Total: 10.35 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -6.68 Total: -117.52 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.11 Total: -50.63 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.30 Total: 0.70 kcal Total: -72.89 -0.55 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.046 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds