Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37475 * 123.35066 * 2 1 4 4 C 1.33815 * 115.09563 * 179.76660 * 3 2 1 5 5 S 1.70615 * 110.95825 * 0.49108 * 4 3 2 6 6 C 1.36648 * 123.35086 * 180.29856 * 2 1 3 7 7 C 1.46585 * 125.45959 * 359.97438 * 6 2 1 8 8 O 1.21708 * 119.99613 * 359.97438 * 7 6 2 9 9 N 1.34771 * 120.00102 * 180.02562 * 7 6 2 10 10 C 1.46503 * 119.99862 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47089 * 34.99703 * 10 9 7 12 12 C 1.53000 * 109.47012 * 274.99525 * 10 9 7 13 13 C 1.53000 * 109.47019 * 154.99777 * 10 9 7 14 14 C 1.53001 * 109.47158 * 294.99848 * 13 10 9 15 15 N 1.46905 * 109.47256 * 180.02562 * 14 13 10 16 16 C 1.46895 * 110.99938 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47101 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00337 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00499 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99473 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99861 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99636 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00350 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46734 * 90.00302 * 24 22 20 26 26 H 1.48500 * 109.47328 * 210.00415 * 24 22 20 27 27 H 1.48502 * 109.47061 * 330.00763 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.70292 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70392 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70373 * 1 2 3 31 31 H 1.08000 * 122.44940 * 0.02562 * 3 2 1 32 32 H 1.08006 * 124.52045 * 180.21922 * 4 3 2 33 33 H 0.97000 * 120.00117 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47138 * 180.02562 * 12 10 9 35 35 H 1.09005 * 109.47137 * 300.00456 * 12 10 9 36 36 H 1.08992 * 109.47153 * 60.00007 * 12 10 9 37 37 H 1.09004 * 109.47254 * 54.99655 * 13 10 9 38 38 H 1.08996 * 109.47304 * 174.99875 * 13 10 9 39 39 H 1.09004 * 109.46880 * 300.00036 * 14 13 10 40 40 H 1.08996 * 109.46991 * 59.99835 * 14 13 10 41 41 H 1.00900 * 110.99588 * 303.94966 * 15 14 13 42 42 H 1.08997 * 109.47154 * 299.99897 * 16 15 14 43 43 H 1.09004 * 109.47339 * 59.99594 * 16 15 14 44 44 H 0.97004 * 119.99702 * 359.97438 * 19 17 16 45 45 H 0.96998 * 120.00200 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7081 -0.0037 6 6 2.2583 -1.1414 -0.0059 7 6 1.7284 -2.5082 -0.0125 8 8 0.5257 -2.6945 -0.0125 9 7 2.5731 -3.5583 -0.0175 10 6 2.0435 -4.9243 -0.0247 11 1 1.1275 -4.9557 -0.6146 12 6 1.7415 -5.3616 1.4100 13 6 3.0783 -5.8692 -0.6388 14 6 3.2880 -5.5087 -2.1109 15 7 4.2811 -6.4164 -2.7007 16 6 4.5081 -6.0997 -4.1170 17 6 5.5307 -7.0489 -4.6863 18 8 6.0218 -7.9054 -3.9817 19 7 5.8990 -6.9470 -5.9788 20 6 6.8290 -7.8109 -6.4969 21 1 7.2668 -8.5729 -5.8692 22 6 7.2089 -7.7053 -7.8293 23 7 8.1007 -8.5331 -8.3257 24 14 6.4521 -6.3868 -8.9148 25 1 7.2745 -5.1526 -8.8406 26 1 6.4066 -6.8677 -10.3190 27 1 5.0737 -6.0920 -8.4475 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3633 -0.8873 -0.5184 30 1 -0.3633 0.8927 -0.5092 31 1 1.8201 2.1334 0.0004 32 1 4.3206 1.7490 0.0091 33 1 3.5316 -3.4098 -0.0172 34 1 1.3479 -6.3781 1.4048 35 1 2.6575 -5.3301 2.0000 36 1 1.0043 -4.6885 1.8475 37 1 4.0225 -5.7719 -0.1028 38 1 2.7220 -6.8966 -0.5635 39 1 2.3438 -5.6061 -2.6468 40 1 3.6443 -4.4814 -2.1861 41 1 5.1460 -6.3927 -2.1814 42 1 3.5723 -6.2011 -4.6665 43 1 4.8730 -5.0765 -4.2066 44 1 5.5054 -6.2628 -6.5427 45 1 8.3657 -8.4597 -9.2559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268341484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -44.682836 kcal Electronic energy + Delta-G solvation = -26019.375975 eV Core-core repulsion = 22163.281468 eV Total energy + Delta-G solvation = -3856.094508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33308 -38.60288 -38.34408 -36.87628 -35.08373 -33.88897 -32.20157 -31.66002 -31.18886 -29.45443 -28.27308 -26.39591 -24.22149 -23.87409 -22.67093 -21.93505 -20.98463 -19.44799 -19.21349 -18.56995 -18.32266 -16.57396 -16.28020 -16.18859 -15.65010 -15.52524 -15.21623 -14.95626 -14.41835 -14.30305 -14.03709 -13.84867 -13.75798 -13.51053 -13.45442 -13.00129 -12.80357 -12.73107 -12.48731 -12.46886 -12.24426 -12.15502 -12.13731 -11.75401 -11.43242 -11.31222 -11.21596 -11.15355 -11.02561 -10.59789 -10.15814 -9.98045 -9.57798 -9.51250 -9.16554 -8.85713 -8.59865 -8.20598 -8.14711 -6.31564 -3.83014 0.10948 1.07108 1.46009 1.97380 2.80413 2.87668 3.02755 3.06307 3.14768 3.73472 3.97881 4.10004 4.41924 4.47185 4.68502 4.73910 4.80120 4.81083 4.91981 5.06645 5.16627 5.18920 5.21252 5.29015 5.39945 5.45641 5.47009 5.52645 5.60188 5.63481 5.68902 5.79996 5.83448 5.88614 5.94135 5.95620 6.02147 6.12019 6.24605 7.06947 7.12601 7.55560 7.58169 7.85536 8.14023 8.59314 8.94439 9.41994 9.82159 10.81548 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.002182 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.498537 B =12829.461269 C =14073.142569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.019 4.019 3 C -0.150 4.150 4 C -0.224 4.224 5 S 0.196 5.804 6 C -0.278 4.278 7 C 0.594 3.406 8 O -0.526 6.526 9 N -0.721 5.721 10 C 0.144 3.856 11 H 0.093 0.907 12 C -0.162 4.162 13 C -0.126 4.126 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.350 0.650 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 21.104 19.018 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.035 4.035 3 C -0.181 4.181 4 C -0.362 4.362 5 S 0.464 5.536 6 C -0.398 4.398 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.373 5.373 10 C 0.040 3.960 11 H 0.111 0.889 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.071 4.071 15 N -0.301 5.301 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.644 18.953 19.159 29.768 hybrid contribution -0.605 2.992 -1.044 3.226 sum -13.249 21.945 18.114 31.389 Atomic orbital electron populations 1.20749 0.88613 1.04004 1.03071 1.19558 0.97943 0.90393 0.95581 1.19962 0.92574 0.99785 1.05815 1.25286 1.00739 1.01807 1.08375 1.83084 1.03954 0.98472 1.68049 1.24441 0.97305 0.97438 1.20599 1.16890 0.86174 0.82804 0.76087 1.90781 1.14257 1.85250 1.50197 1.46039 1.09529 1.06117 1.75578 1.21038 0.98048 0.79665 0.97236 0.88869 1.22162 1.02029 1.01974 0.95891 1.21898 0.99011 1.00345 0.95177 1.21980 0.97002 0.93591 0.94511 1.60048 1.15103 1.53127 1.01830 1.21700 0.99574 0.96836 0.90365 1.19709 0.86049 0.87792 0.82891 1.90563 1.57582 1.37476 1.59051 1.42218 1.39393 1.31848 1.09573 1.19433 1.16187 1.12207 0.95529 0.86273 1.25043 0.96807 0.97611 0.96731 1.69622 1.30787 1.36550 1.15171 0.86670 0.79438 0.82096 0.81188 1.19669 1.20147 1.19457 0.90667 0.88782 0.91626 0.83703 0.81285 0.76915 0.91146 0.92378 0.92079 0.91225 0.88794 0.90961 0.95639 0.83099 0.89492 0.93840 0.79687 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.55 36.01 0.34 -0.53 16 2 C -0.02 -0.17 5.90 -105.47 -0.62 -0.80 16 3 C -0.15 -1.07 9.97 -41.41 -0.41 -1.48 16 4 C -0.22 -1.44 10.92 29.18 0.32 -1.13 16 5 S 0.20 1.38 22.16 -107.50 -2.38 -1.00 16 6 C -0.28 -2.63 6.45 -36.79 -0.24 -2.87 16 7 C 0.59 6.40 7.74 -12.90 -0.10 6.30 16 8 O -0.53 -7.00 13.91 5.18 0.07 -6.93 16 9 N -0.72 -6.36 4.53 -55.14 -0.25 -6.61 16 10 C 0.14 1.27 2.57 -67.93 -0.17 1.10 16 11 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 12 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 13 C -0.13 -1.14 5.01 -26.73 -0.13 -1.27 16 14 C 0.06 0.66 5.57 -3.82 -0.02 0.64 16 15 N -0.67 -10.05 6.13 -115.06 -0.70 -10.75 16 16 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 17 C 0.45 10.22 7.82 -10.99 -0.09 10.14 16 18 O -0.56 -15.15 15.78 5.55 0.09 -15.07 16 19 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 20 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 24 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.97 6.01 -51.93 -0.31 0.66 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 33 H 0.40 2.91 7.72 -40.82 -0.31 2.59 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 41 H 0.35 5.33 8.43 -39.29 -0.33 5.00 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -34.26 389.32 -8.98 -43.24 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.62 Total: 13.61 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.05 Total: 2.14 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.24 Total: -56.54 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.16 Total: -22.00 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.38 Total: -1.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.26 -8.98 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268341484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.441 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds