Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37475 * 123.35066 * 2 1 4 4 C 1.33815 * 115.09563 * 179.76660 * 3 2 1 5 5 S 1.70615 * 110.95825 * 0.49108 * 4 3 2 6 6 C 1.36648 * 123.35086 * 180.29856 * 2 1 3 7 7 C 1.46585 * 125.45959 * 359.97438 * 6 2 1 8 8 O 1.21708 * 119.99613 * 359.97438 * 7 6 2 9 9 N 1.34771 * 120.00102 * 180.02562 * 7 6 2 10 10 C 1.46503 * 119.99862 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47089 * 34.99703 * 10 9 7 12 12 C 1.53000 * 109.47012 * 274.99525 * 10 9 7 13 13 C 1.53000 * 109.47019 * 154.99777 * 10 9 7 14 14 C 1.53001 * 109.47158 * 294.99848 * 13 10 9 15 15 N 1.46905 * 109.47256 * 180.02562 * 14 13 10 16 16 C 1.46895 * 110.99938 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47101 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00337 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00499 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99473 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99861 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99636 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00350 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46734 * 90.00302 * 24 22 20 26 26 H 1.48500 * 109.47328 * 210.00415 * 24 22 20 27 27 H 1.48502 * 109.47061 * 330.00763 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.70292 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70392 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70373 * 1 2 3 31 31 H 1.08000 * 122.44940 * 0.02562 * 3 2 1 32 32 H 1.08006 * 124.52045 * 180.21922 * 4 3 2 33 33 H 0.97000 * 120.00117 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47138 * 180.02562 * 12 10 9 35 35 H 1.09005 * 109.47137 * 300.00456 * 12 10 9 36 36 H 1.08992 * 109.47153 * 60.00007 * 12 10 9 37 37 H 1.09004 * 109.47254 * 54.99655 * 13 10 9 38 38 H 1.08996 * 109.47304 * 174.99875 * 13 10 9 39 39 H 1.09004 * 109.46880 * 300.00036 * 14 13 10 40 40 H 1.08996 * 109.46991 * 59.99835 * 14 13 10 41 41 H 1.00900 * 110.99588 * 303.94966 * 15 14 13 42 42 H 1.08997 * 109.47154 * 299.99897 * 16 15 14 43 43 H 1.09004 * 109.47339 * 59.99594 * 16 15 14 44 44 H 0.97004 * 119.99702 * 359.97438 * 19 17 16 45 45 H 0.96998 * 120.00200 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7081 -0.0037 6 6 2.2583 -1.1414 -0.0059 7 6 1.7284 -2.5082 -0.0125 8 8 0.5257 -2.6945 -0.0125 9 7 2.5731 -3.5583 -0.0175 10 6 2.0435 -4.9243 -0.0247 11 1 1.1275 -4.9557 -0.6146 12 6 1.7415 -5.3616 1.4100 13 6 3.0783 -5.8692 -0.6388 14 6 3.2880 -5.5087 -2.1109 15 7 4.2811 -6.4164 -2.7007 16 6 4.5081 -6.0997 -4.1170 17 6 5.5307 -7.0489 -4.6863 18 8 6.0218 -7.9054 -3.9817 19 7 5.8990 -6.9470 -5.9788 20 6 6.8290 -7.8109 -6.4969 21 1 7.2668 -8.5729 -5.8692 22 6 7.2089 -7.7053 -7.8293 23 7 8.1007 -8.5331 -8.3257 24 14 6.4521 -6.3868 -8.9148 25 1 7.2745 -5.1526 -8.8406 26 1 6.4066 -6.8677 -10.3190 27 1 5.0737 -6.0920 -8.4475 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3633 -0.8873 -0.5184 30 1 -0.3633 0.8927 -0.5092 31 1 1.8201 2.1334 0.0004 32 1 4.3206 1.7490 0.0091 33 1 3.5316 -3.4098 -0.0172 34 1 1.3479 -6.3781 1.4048 35 1 2.6575 -5.3301 2.0000 36 1 1.0043 -4.6885 1.8475 37 1 4.0225 -5.7719 -0.1028 38 1 2.7220 -6.8966 -0.5635 39 1 2.3438 -5.6061 -2.6468 40 1 3.6443 -4.4814 -2.1861 41 1 5.1460 -6.3927 -2.1814 42 1 3.5723 -6.2011 -4.6665 43 1 4.8730 -5.0765 -4.2066 44 1 5.5054 -6.2628 -6.5427 45 1 8.3657 -8.4597 -9.2559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268341484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -70.736898 kcal Electronic energy + Delta-G solvation = -26020.505764 eV Core-core repulsion = 22163.281468 eV Total energy + Delta-G solvation = -3857.224297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08439 -40.30855 -39.04800 -37.80602 -36.30950 -35.73998 -33.75706 -32.99662 -31.78237 -30.46647 -28.91329 -27.89241 -25.64593 -24.66081 -23.53457 -22.75208 -21.75755 -21.28088 -20.31265 -19.86836 -19.16387 -17.81580 -17.39367 -17.02457 -16.89579 -16.64846 -16.24336 -15.94690 -15.69089 -15.41410 -15.13599 -14.96981 -14.74114 -14.55835 -14.45358 -14.09171 -14.02660 -13.86468 -13.55279 -13.38269 -13.22226 -13.05771 -12.94818 -12.80206 -12.71205 -12.42223 -12.28164 -12.07169 -11.98016 -11.86995 -11.79374 -11.51721 -10.95727 -10.46432 -10.25663 -10.25225 -9.75402 -9.39437 -9.33478 -8.41616 -6.02546 -0.48809 0.51527 0.92558 1.30493 1.34955 1.39416 1.44339 1.94518 2.10151 2.14688 2.22635 2.69082 3.14750 3.35212 3.76532 3.90052 3.97301 4.02316 4.15667 4.18470 4.25875 4.39232 4.41238 4.42754 4.49480 4.58756 4.65917 4.67379 4.77278 4.80637 4.93508 4.99723 5.03842 5.09986 5.18043 5.30298 5.38004 5.46305 5.52247 5.55109 5.89741 6.03101 6.39238 6.43313 6.59181 6.87427 7.11640 7.39041 7.95167 8.75950 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.002182 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.498537 B =12829.461269 C =14073.142569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.029 4.029 3 C -0.161 4.161 4 C -0.217 4.217 5 S 0.220 5.780 6 C -0.310 4.310 7 C 0.590 3.410 8 O -0.561 6.561 9 N -0.713 5.713 10 C 0.150 3.850 11 H 0.078 0.922 12 C -0.157 4.157 13 C -0.116 4.116 14 C 0.063 3.937 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.449 3.551 18 O -0.613 6.613 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.233 1.233 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.197 0.803 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.347 0.653 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.389 0.611 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 24.562 18.813 34.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.191 4.191 4 C -0.355 4.355 5 S 0.488 5.512 6 C -0.430 4.430 7 C 0.377 3.623 8 O -0.442 6.442 9 N -0.365 5.365 10 C 0.046 3.954 11 H 0.096 0.904 12 C -0.215 4.215 13 C -0.154 4.154 14 C -0.066 4.066 15 N -0.318 5.318 16 C -0.071 4.071 17 C 0.237 3.763 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.156 1.156 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.183 0.817 32 H 0.214 0.786 33 H 0.241 0.759 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.166 0.834 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.581 22.422 18.978 32.363 hybrid contribution -0.243 1.859 -0.865 2.064 sum -13.824 24.281 18.113 33.298 Atomic orbital electron populations 1.20703 0.88788 1.03717 1.03012 1.19827 0.98257 0.91092 0.95368 1.20145 0.92798 1.00069 1.06102 1.25691 1.01117 1.02142 1.06538 1.82947 1.01856 0.98919 1.67448 1.24464 0.99091 0.96891 1.22517 1.17155 0.85886 0.83670 0.75542 1.90761 1.15671 1.85875 1.51938 1.45977 1.09827 1.05765 1.74892 1.20942 0.97342 0.79678 0.97487 0.90371 1.22110 1.02101 1.02054 0.95278 1.21797 0.99512 1.00086 0.94034 1.22013 0.95759 0.93500 0.95325 1.60042 1.15636 1.54903 1.01226 1.21619 0.98160 0.96209 0.91135 1.20960 0.85773 0.87557 0.82044 1.90541 1.59315 1.39721 1.60176 1.42051 1.39014 1.31797 1.10442 1.19011 1.18279 1.12685 0.95803 0.92581 1.26117 0.96841 1.00479 0.97959 1.69803 1.32535 1.39041 1.16044 0.85370 0.80199 0.78103 0.77886 1.17994 1.20046 1.15636 0.90607 0.91156 0.89742 0.81686 0.78625 0.75921 0.90272 0.91385 0.93540 0.90091 0.89092 0.91063 0.94319 0.83432 0.87320 0.90543 0.77500 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.55 71.24 0.68 -1.01 16 2 C -0.03 -0.49 5.90 -20.42 -0.12 -0.61 16 3 C -0.16 -1.91 9.97 21.08 0.21 -1.70 16 4 C -0.22 -2.15 10.92 66.81 0.73 -1.42 16 5 S 0.22 2.61 22.16 -56.49 -1.25 1.35 16 6 C -0.31 -5.56 6.45 24.08 0.16 -5.41 16 7 C 0.59 12.51 7.74 86.42 0.67 13.18 16 8 O -0.56 -15.30 13.91 -4.38 -0.06 -15.36 16 9 N -0.71 -11.77 4.53 -446.58 -2.02 -13.79 16 10 C 0.15 2.49 2.57 44.99 0.12 2.61 16 11 H 0.08 1.57 7.58 -2.39 -0.02 1.56 16 12 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 13 C -0.12 -1.90 5.01 30.59 0.15 -1.74 16 14 C 0.06 1.26 5.57 86.30 0.48 1.74 16 15 N -0.69 -19.28 6.13 -517.94 -3.17 -22.45 16 16 C 0.06 1.85 6.17 85.56 0.53 2.38 16 17 C 0.45 20.17 7.82 87.65 0.69 20.86 16 18 O -0.61 -33.81 15.78 -3.07 -0.05 -33.86 16 19 N -0.59 -27.88 5.09 -306.99 -1.56 -29.44 16 20 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 21 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.25 13.96 21.66 0.30 -55.95 16 24 Si 0.96 38.71 27.74 68.60 1.90 40.62 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.50 6.01 -2.39 -0.01 1.49 16 30 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.40 5.22 7.72 -92.71 -0.72 4.50 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.04 0.69 7.75 -2.39 -0.02 0.67 16 41 H 0.35 10.10 8.43 -89.69 -0.76 9.35 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 44 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 45 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -79.96 389.32 -0.65 -80.61 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -1.03 Total: 39.89 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.29 Total: 8.39 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.45 Total: -121.63 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.11 Total: -49.22 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.62 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.25 Total: 1.35 kcal Total: -79.96 -0.65 -80.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268341484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.870 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds