Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37475 * 123.35066 * 2 1 4 4 C 1.33815 * 115.09563 * 179.76660 * 3 2 1 5 5 S 1.70615 * 110.95825 * 0.49108 * 4 3 2 6 6 C 1.36648 * 123.35086 * 180.29856 * 2 1 3 7 7 C 1.46586 * 125.45913 * 359.96346 * 6 2 1 8 8 O 1.21707 * 119.99699 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99951 * 180.02562 * 7 6 2 10 10 C 1.46504 * 119.99712 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47095 * 324.99114 * 10 9 7 12 12 C 1.52995 * 109.47175 * 84.99794 * 10 9 7 13 13 C 1.52999 * 109.46901 * 204.99922 * 10 9 7 14 14 C 1.53001 * 109.47358 * 64.99495 * 13 10 9 15 15 N 1.46904 * 109.47137 * 180.02562 * 14 13 10 16 16 C 1.46902 * 110.99771 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46827 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99933 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99898 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99826 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99896 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99407 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00627 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46618 * 59.99894 * 24 22 20 26 26 H 1.48493 * 109.47007 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47254 * 300.00345 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.70292 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70392 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70373 * 1 2 3 31 31 H 1.07996 * 122.44854 * 359.97438 * 3 2 1 32 32 H 1.08001 * 124.52056 * 180.19812 * 4 3 2 33 33 H 0.96996 * 120.00136 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47024 * 179.97438 * 12 10 9 35 35 H 1.08995 * 109.47195 * 299.99500 * 12 10 9 36 36 H 1.08998 * 109.47088 * 60.00145 * 12 10 9 37 37 H 1.09004 * 109.47271 * 185.00169 * 13 10 9 38 38 H 1.09010 * 109.47226 * 304.99704 * 13 10 9 39 39 H 1.08992 * 109.47618 * 300.00118 * 14 13 10 40 40 H 1.08997 * 109.46685 * 60.00267 * 14 13 10 41 41 H 1.00907 * 111.00087 * 303.95860 * 15 14 13 42 42 H 1.08998 * 109.47099 * 299.99397 * 16 15 14 43 43 H 1.08999 * 109.47189 * 60.00328 * 16 15 14 44 44 H 0.97001 * 120.00110 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00275 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9562 0.0049 5 16 3.9623 -0.7081 -0.0037 6 6 2.2583 -1.1414 -0.0059 7 6 1.7284 -2.5082 -0.0123 8 8 0.5257 -2.6945 -0.0130 9 7 2.5731 -3.5583 -0.0173 10 6 2.0435 -4.9243 -0.0243 11 1 1.1272 -4.9617 0.5649 12 6 1.7422 -5.3472 -1.4634 13 6 3.0780 -5.8754 0.5809 14 6 3.2870 -5.5296 2.0566 15 7 4.2807 -6.4425 2.6374 16 6 4.5070 -6.1400 4.0570 17 6 5.5303 -7.0941 4.6169 18 8 6.0223 -7.9429 3.9037 19 7 5.8981 -7.0050 5.9104 20 6 6.8295 -7.8727 6.4197 21 1 7.2681 -8.6279 5.7844 22 6 7.2090 -7.7803 7.7532 23 7 6.6757 -6.8611 8.5260 24 14 8.4774 -8.9631 8.4473 25 1 9.7524 -8.8157 7.7002 26 1 8.7067 -8.6569 9.8821 27 1 7.9820 -10.3563 8.3109 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3633 -0.8873 -0.5184 30 1 -0.3633 0.8927 -0.5092 31 1 1.8201 2.1334 -0.0004 32 1 4.3205 1.7490 0.0087 33 1 3.5316 -3.4098 -0.0171 34 1 1.3486 -6.3636 -1.4686 35 1 1.0052 -4.6696 -1.8945 36 1 2.6585 -5.3098 -2.0525 37 1 2.7217 -6.9020 0.4950 38 1 4.0225 -5.7727 0.0464 39 1 3.6432 -4.5032 2.1424 40 1 2.3426 -5.6324 2.5910 41 1 4.0042 -7.4049 2.5126 42 1 4.8712 -5.1175 4.1570 43 1 3.5711 -6.2477 4.6052 44 1 5.5044 -6.3264 6.4809 45 1 6.9403 -6.7969 9.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268341485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -52.058110 kcal Electronic energy + Delta-G solvation = -25942.351177 eV Core-core repulsion = 22085.936853 eV Total energy + Delta-G solvation = -3856.414324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26744 -38.47399 -38.20589 -36.79296 -34.99405 -33.82605 -32.12566 -31.23803 -31.10496 -29.34112 -28.21116 -26.23025 -24.25261 -23.90992 -22.63578 -21.88699 -20.90340 -19.38316 -19.05286 -18.50198 -17.87585 -16.56037 -16.21905 -16.09825 -15.54789 -15.45725 -15.23652 -14.56927 -14.39283 -14.13371 -14.01836 -13.84397 -13.65749 -13.58688 -13.46653 -13.08931 -12.75738 -12.63667 -12.41725 -12.27361 -12.20971 -12.08522 -11.66142 -11.50346 -11.28222 -11.25529 -11.20595 -11.02828 -10.92142 -10.44269 -10.21251 -10.09047 -9.49949 -9.44201 -9.09425 -8.78219 -8.46718 -8.06727 -7.95898 -6.41409 -3.82405 0.18081 1.14810 1.53812 2.04034 2.87097 2.94060 3.20220 3.25843 3.30246 3.91013 4.03605 4.24947 4.49577 4.54717 4.79969 4.83872 4.86430 4.94032 4.99173 5.12169 5.23942 5.24429 5.31142 5.34247 5.46499 5.50964 5.56376 5.59206 5.66004 5.69350 5.79986 5.90230 5.93859 5.99242 6.01134 6.06309 6.17621 6.27052 6.29629 7.19569 7.20756 7.55129 7.65590 7.92106 8.06322 8.61488 9.17865 9.54516 10.05978 10.76285 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.002013 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.792416 B =13907.050288 C =15052.040225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.020 4.020 3 C -0.151 4.151 4 C -0.225 4.225 5 S 0.201 5.799 6 C -0.278 4.278 7 C 0.594 3.406 8 O -0.528 6.528 9 N -0.720 5.720 10 C 0.145 3.855 11 H 0.091 0.909 12 C -0.162 4.162 13 C -0.126 4.126 14 C 0.058 3.942 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.349 0.651 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.975 16.040 -18.712 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.035 4.035 3 C -0.182 4.182 4 C -0.363 4.363 5 S 0.470 5.530 6 C -0.398 4.398 7 C 0.381 3.619 8 O -0.407 6.407 9 N -0.372 5.372 10 C 0.040 3.960 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.165 4.165 14 C -0.071 4.071 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.168 0.832 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.520 14.884 -19.186 26.082 hybrid contribution -1.064 0.762 1.305 1.848 sum -10.584 15.647 -17.882 26.011 Atomic orbital electron populations 1.20744 0.88676 1.03823 1.03159 1.19545 0.97900 0.90406 0.95697 1.19947 0.92578 0.99741 1.05934 1.25294 1.00730 1.01912 1.08367 1.83143 1.03788 0.98304 1.67803 1.24439 0.97400 0.97404 1.20596 1.16893 0.86153 0.82829 0.76054 1.90775 1.14295 1.85274 1.50338 1.46021 1.09677 1.05989 1.75470 1.21017 0.97903 0.79906 0.97132 0.89086 1.22164 1.02069 1.01874 0.95954 1.21893 0.99364 0.99345 0.95858 1.21965 0.93533 0.97688 0.93953 1.60097 1.47023 1.08050 1.14966 1.21669 0.97893 1.00122 0.88552 1.19807 0.86727 0.87719 0.83124 1.90516 1.58586 1.38906 1.58798 1.41865 1.37955 1.31745 1.08466 1.19658 1.17016 1.12091 0.94191 0.87964 1.25267 0.98789 0.97807 0.96091 1.69600 1.43667 1.33704 1.07375 0.85913 0.80566 0.80176 0.77537 1.19871 1.20982 1.19907 0.90604 0.88868 0.91715 0.83763 0.81304 0.76662 0.91318 0.92085 0.92277 0.89972 0.90146 0.91251 0.95441 0.83188 0.89688 0.93901 0.77452 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.55 36.01 0.34 -0.58 16 2 C -0.02 -0.19 5.90 -105.47 -0.62 -0.81 16 3 C -0.15 -1.15 9.97 -41.41 -0.41 -1.56 16 4 C -0.23 -1.58 10.92 29.18 0.32 -1.26 16 5 S 0.20 1.55 22.16 -107.50 -2.38 -0.83 16 6 C -0.28 -2.80 6.45 -36.79 -0.24 -3.04 16 7 C 0.59 6.74 7.74 -12.90 -0.10 6.64 16 8 O -0.53 -7.29 13.91 5.18 0.07 -7.22 16 9 N -0.72 -6.84 4.53 -55.14 -0.25 -7.09 16 10 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 11 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 12 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 13 C -0.13 -1.22 5.01 -26.73 -0.13 -1.35 16 14 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16 15 N -0.67 -10.64 6.13 -115.06 -0.70 -11.35 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 18 O -0.58 -15.90 15.78 5.55 0.09 -15.82 16 19 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.98 6.01 -51.93 -0.31 0.67 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.40 3.29 7.72 -40.82 -0.31 2.97 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -32.97 392.44 -9.33 -42.30 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -6.66 Total: 14.31 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.05 Total: 2.10 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.29 Total: -56.85 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.38 Total: -0.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.97 -9.33 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268341485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.758 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds