Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 128.00667 * 2 1 4 4 O 1.34034 * 106.44531 * 179.97438 * 3 2 1 5 5 N 1.20925 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60250 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.79902 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46817 * 89.97871 * 7 6 5 9 9 C 1.46900 * 110.99867 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47036 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47368 * 294.99706 * 10 9 8 12 12 N 1.46499 * 109.46845 * 55.00499 * 10 9 8 13 13 C 1.34781 * 119.99384 * 204.99705 * 12 10 9 14 14 O 1.21286 * 120.00362 * 0.02562 * 13 12 10 15 15 C 1.50702 * 119.99656 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00118 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00244 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47074 * 60.00117 * 21 19 17 23 23 H 1.48498 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46913 * 299.99846 * 21 19 17 25 25 C 1.53002 * 109.47023 * 175.00189 * 10 9 8 26 26 C 1.53006 * 117.50072 * 248.74974 * 25 10 9 27 27 C 1.52995 * 117.50136 * 180.08908 * 25 10 9 28 28 H 1.08995 * 109.46802 * 270.02506 * 1 2 3 29 29 H 1.08999 * 109.46909 * 30.02560 * 1 2 3 30 30 H 1.09005 * 109.46860 * 150.03020 * 1 2 3 31 31 H 1.08000 * 126.77687 * 359.95633 * 3 2 1 32 32 H 1.09001 * 109.46799 * 209.97694 * 7 6 5 33 33 H 1.09000 * 109.47005 * 329.97981 * 7 6 5 34 34 H 1.00906 * 111.00244 * 303.95228 * 8 7 6 35 35 H 1.08998 * 109.47019 * 300.00185 * 9 8 7 36 36 H 1.09000 * 109.47179 * 59.99980 * 9 8 7 37 37 H 0.97000 * 120.00481 * 24.99829 * 12 10 9 38 38 H 1.09001 * 109.47495 * 300.00086 * 15 13 12 39 39 H 1.08998 * 109.47040 * 59.99949 * 15 13 12 40 40 H 0.96999 * 119.99729 * 179.97438 * 20 19 17 41 41 H 1.09004 * 115.54893 * 34.41368 * 25 10 9 42 42 H 1.09001 * 117.49113 * 359.97438 * 26 25 10 43 43 H 1.08998 * 117.50219 * 145.01456 * 26 25 10 44 44 H 1.08995 * 117.49967 * 214.97884 * 27 25 10 45 45 H 1.09005 * 117.49727 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5878 -0.6346 0.0014 6 6 2.3776 -1.1140 0.0021 7 6 1.9827 -2.5683 0.0026 8 7 1.8555 -3.0406 1.3878 9 6 1.4702 -4.4576 1.4276 10 6 1.3485 -4.9123 2.8834 11 1 2.3269 -4.8661 3.3615 12 7 0.4159 -4.0333 3.5932 13 6 0.5099 -3.8902 4.9301 14 8 1.3667 -4.4887 5.5454 15 6 -0.4491 -2.9855 5.6602 16 16 -0.0683 -3.0048 7.4296 17 6 -1.3036 -1.8961 8.0205 18 1 -1.9979 -1.4427 7.3286 19 6 -1.3852 -1.6062 9.3754 20 7 -0.5400 -2.1601 10.2190 21 14 -2.6953 -0.4313 10.0021 22 1 -4.0399 -0.9655 9.6680 23 1 -2.5701 -0.2903 11.4750 24 1 -2.5168 0.8964 9.3613 25 6 0.8273 -6.3502 2.9267 26 6 -0.5840 -6.5739 3.4737 27 6 0.6336 -6.9903 4.3027 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 2.0576 2.1094 -0.0007 32 1 1.0282 -2.6858 -0.5104 33 1 2.7460 -3.1522 -0.5117 34 1 2.7084 -2.8828 1.9034 35 1 0.5121 -4.5878 0.9245 36 1 2.2296 -5.0549 0.9230 37 1 -0.2691 -3.5543 3.1011 38 1 -0.3514 -1.9690 5.2790 39 1 -1.4694 -3.3356 5.5038 40 1 -0.5967 -1.9572 11.1658 41 1 1.1601 -6.9955 2.1137 42 1 -1.1409 -5.6967 3.8032 43 1 -1.1795 -7.3666 3.0209 44 1 0.8386 -8.0568 4.3950 45 1 0.8779 -6.3872 5.1773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269043013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = 51.622843 kcal Electronic energy + Delta-G solvation = -26714.376081 eV Core-core repulsion = 22862.457701 eV Total energy + Delta-G solvation = -3851.918380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.17238 -39.92301 -37.43402 -36.59180 -34.85884 -33.43497 -32.41021 -32.37867 -30.23542 -28.51492 -28.19411 -26.02571 -25.42692 -22.82086 -22.07977 -21.92702 -21.44061 -20.79875 -19.75406 -17.92760 -17.80443 -17.69607 -16.61485 -16.36331 -16.10961 -15.44307 -15.01583 -14.95686 -14.78039 -14.44195 -14.13173 -13.77647 -13.63310 -13.51374 -13.41934 -13.04599 -12.81545 -12.69738 -12.35806 -12.30702 -11.92639 -11.83298 -11.69037 -11.36378 -11.17801 -11.01997 -11.01216 -10.74879 -10.36756 -10.21892 -9.89816 -9.78832 -9.59269 -9.29344 -9.03561 -8.82656 -8.68487 -8.20147 -6.46078 -6.19131 -3.88977 1.25099 1.89244 3.02127 3.07988 3.15035 3.24790 3.29054 3.33221 3.65562 3.73788 3.93374 4.09985 4.20708 4.23178 4.57327 4.63431 4.81467 4.90563 4.99582 5.04305 5.10842 5.15622 5.15990 5.19322 5.25378 5.28911 5.33760 5.41334 5.50223 5.52627 5.55578 5.67249 5.81389 5.91600 5.91917 5.96270 6.01272 6.18832 6.25410 6.51466 6.57964 6.77001 6.95518 7.61648 7.85622 8.00426 8.37458 8.72042 9.26153 10.88230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.003071 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.674573 B = 9114.140465 C =11497.344487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.182 4.182 3 C -0.068 4.068 4 O 0.101 5.899 5 N -0.361 5.361 6 C 0.019 3.981 7 C 0.141 3.859 8 N -0.679 5.679 9 C 0.056 3.944 10 C 0.181 3.819 11 H 0.088 0.912 12 N -0.717 5.717 13 C 0.534 3.466 14 O -0.518 6.518 15 C -0.152 4.152 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.917 3.083 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.174 4.174 26 C -0.174 4.174 27 C -0.180 4.180 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.215 0.785 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.349 0.651 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.401 0.599 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.268 0.732 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -0.004 -25.560 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.186 4.186 3 C -0.149 4.149 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.140 4.140 7 C 0.011 3.989 8 N -0.311 5.311 9 C -0.073 4.073 10 C 0.075 3.925 11 H 0.106 0.894 12 N -0.370 5.370 13 C 0.321 3.679 14 O -0.393 6.393 15 C -0.303 4.303 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.194 4.194 26 C -0.211 4.211 27 C -0.217 4.217 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.236 0.764 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.435 -1.350 -24.286 24.565 hybrid contribution -2.168 1.484 -0.839 2.758 sum 1.267 0.133 -25.125 25.157 Atomic orbital electron populations 1.20091 0.87184 1.02722 1.03264 1.21306 0.98819 0.91346 1.07168 1.25787 0.83066 1.01272 1.04815 1.84810 1.29217 1.15386 1.67171 1.73845 1.22462 0.91564 1.18609 1.23327 0.88550 0.98308 1.03822 1.20121 1.01137 0.86652 0.90955 1.60375 1.40718 1.18246 1.11784 1.22228 1.01320 0.87506 0.96285 1.20303 0.94293 0.87095 0.90775 0.89395 1.45841 1.35871 1.48127 1.07186 1.20246 0.84659 0.81437 0.81584 1.90633 1.35619 1.46429 1.66643 1.23515 1.00837 1.01043 1.04897 1.85359 1.45134 1.60965 0.91767 1.22831 1.18710 1.31353 0.95486 0.91063 1.24977 0.96507 0.96331 0.95706 1.70010 1.35336 1.41619 1.03376 0.86246 0.81066 0.80620 0.77707 1.19953 1.20834 1.19962 1.22658 1.01030 0.96905 0.98780 1.22911 0.90530 1.03215 1.04430 1.23385 1.01454 1.01008 0.95832 0.90202 0.91307 0.91099 0.76819 0.88760 0.93458 0.83219 0.89958 0.93625 0.76445 0.89361 0.89530 0.92174 0.87803 0.88549 0.89555 0.89614 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.37 36.01 0.37 -0.11 16 2 C -0.18 -1.57 6.32 -104.42 -0.66 -2.23 16 3 C -0.07 -0.53 12.26 29.74 0.36 -0.16 16 4 O 0.10 1.06 11.20 17.19 0.19 1.25 16 5 N -0.36 -4.26 12.07 33.42 0.40 -3.86 16 6 C 0.02 0.19 6.84 -82.10 -0.56 -0.37 16 7 C 0.14 1.15 6.19 -4.98 -0.03 1.12 16 8 N -0.68 -6.18 6.21 -115.06 -0.71 -6.89 16 9 C 0.06 0.45 5.23 -3.82 -0.02 0.43 16 10 C 0.18 2.03 2.67 -67.93 -0.18 1.84 16 11 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 12 N -0.72 -9.15 3.34 -53.80 -0.18 -9.33 16 13 C 0.53 9.57 6.68 -10.98 -0.07 9.49 16 14 O -0.52 -11.14 12.89 5.55 0.07 -11.06 16 15 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.17 -1.91 5.70 -90.62 -0.52 -2.43 16 26 C -0.17 -2.06 9.74 -26.69 -0.26 -2.32 16 27 C -0.18 -2.49 9.82 -26.70 -0.26 -2.75 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 3.76 8.72 -39.29 -0.34 3.42 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 4.35 8.60 -40.82 -0.35 4.00 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 41 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.10 1.25 6.67 -51.93 -0.35 0.90 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.12 2.20 5.02 -51.93 -0.26 1.94 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -34.49 390.84 -8.93 -43.42 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.68 Total: 6.73 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.41 Total: -13.24 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.24 Total: -45.59 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.26 Total: -9.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.49 -8.93 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.044 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds