Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 128.00667 * 2 1 4 4 O 1.34034 * 106.44531 * 179.97438 * 3 2 1 5 5 N 1.20925 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60250 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.79902 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46817 * 89.97871 * 7 6 5 9 9 C 1.46900 * 110.99867 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47036 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47368 * 294.99706 * 10 9 8 12 12 N 1.46499 * 109.46845 * 55.00499 * 10 9 8 13 13 C 1.34781 * 119.99384 * 204.99705 * 12 10 9 14 14 O 1.21286 * 120.00362 * 0.02562 * 13 12 10 15 15 C 1.50702 * 119.99656 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00118 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00244 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47074 * 60.00117 * 21 19 17 23 23 H 1.48498 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46913 * 299.99846 * 21 19 17 25 25 C 1.53002 * 109.47023 * 175.00189 * 10 9 8 26 26 C 1.53006 * 117.50072 * 248.74974 * 25 10 9 27 27 C 1.52995 * 117.50136 * 180.08908 * 25 10 9 28 28 H 1.08995 * 109.46802 * 270.02506 * 1 2 3 29 29 H 1.08999 * 109.46909 * 30.02560 * 1 2 3 30 30 H 1.09005 * 109.46860 * 150.03020 * 1 2 3 31 31 H 1.08000 * 126.77687 * 359.95633 * 3 2 1 32 32 H 1.09001 * 109.46799 * 209.97694 * 7 6 5 33 33 H 1.09000 * 109.47005 * 329.97981 * 7 6 5 34 34 H 1.00906 * 111.00244 * 303.95228 * 8 7 6 35 35 H 1.08998 * 109.47019 * 300.00185 * 9 8 7 36 36 H 1.09000 * 109.47179 * 59.99980 * 9 8 7 37 37 H 0.97000 * 120.00481 * 24.99829 * 12 10 9 38 38 H 1.09001 * 109.47495 * 300.00086 * 15 13 12 39 39 H 1.08998 * 109.47040 * 59.99949 * 15 13 12 40 40 H 0.96999 * 119.99729 * 179.97438 * 20 19 17 41 41 H 1.09004 * 115.54893 * 34.41368 * 25 10 9 42 42 H 1.09001 * 117.49113 * 359.97438 * 26 25 10 43 43 H 1.08998 * 117.50219 * 145.01456 * 26 25 10 44 44 H 1.08995 * 117.49967 * 214.97884 * 27 25 10 45 45 H 1.09005 * 117.49727 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5878 -0.6346 0.0014 6 6 2.3776 -1.1140 0.0021 7 6 1.9827 -2.5683 0.0026 8 7 1.8555 -3.0406 1.3878 9 6 1.4702 -4.4576 1.4276 10 6 1.3485 -4.9123 2.8834 11 1 2.3269 -4.8661 3.3615 12 7 0.4159 -4.0333 3.5932 13 6 0.5099 -3.8902 4.9301 14 8 1.3667 -4.4887 5.5454 15 6 -0.4491 -2.9855 5.6602 16 16 -0.0683 -3.0048 7.4296 17 6 -1.3036 -1.8961 8.0205 18 1 -1.9979 -1.4427 7.3286 19 6 -1.3852 -1.6062 9.3754 20 7 -0.5400 -2.1601 10.2190 21 14 -2.6953 -0.4313 10.0021 22 1 -4.0399 -0.9655 9.6680 23 1 -2.5701 -0.2903 11.4750 24 1 -2.5168 0.8964 9.3613 25 6 0.8273 -6.3502 2.9267 26 6 -0.5840 -6.5739 3.4737 27 6 0.6336 -6.9903 4.3027 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 2.0576 2.1094 -0.0007 32 1 1.0282 -2.6858 -0.5104 33 1 2.7460 -3.1522 -0.5117 34 1 2.7084 -2.8828 1.9034 35 1 0.5121 -4.5878 0.9245 36 1 2.2296 -5.0549 0.9230 37 1 -0.2691 -3.5543 3.1011 38 1 -0.3514 -1.9690 5.2790 39 1 -1.4694 -3.3356 5.5038 40 1 -0.5967 -1.9572 11.1658 41 1 1.1601 -6.9955 2.1137 42 1 -1.1409 -5.6967 3.8032 43 1 -1.1795 -7.3666 3.0209 44 1 0.8386 -8.0568 4.3950 45 1 0.8779 -6.3872 5.1773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269043013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = 27.546281 kcal Electronic energy + Delta-G solvation = -26715.420119 eV Core-core repulsion = 22862.457701 eV Total energy + Delta-G solvation = -3852.962418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.87279 -41.14775 -38.50342 -37.43948 -35.60371 -34.58469 -34.48877 -33.14443 -31.44727 -29.60449 -28.86634 -27.64945 -26.77624 -23.62243 -23.06294 -22.58742 -22.23419 -21.93340 -20.84121 -19.79820 -18.54548 -18.52052 -17.80608 -17.49321 -17.29880 -16.86631 -16.29789 -16.01426 -15.76153 -15.64786 -15.58014 -14.80116 -14.62259 -14.50046 -14.26767 -14.13954 -13.98773 -13.48955 -13.38619 -13.19342 -13.14632 -12.87742 -12.86030 -12.74456 -12.64343 -12.54438 -12.22161 -11.98358 -11.71998 -11.28751 -11.11578 -11.05243 -10.85737 -10.73892 -10.24940 -10.20582 -9.89764 -9.50290 -8.63650 -8.33192 -6.10524 0.60323 1.23368 1.29021 1.44232 1.48269 1.58497 1.71197 2.28158 2.36462 2.45221 2.89586 3.00780 3.06548 3.32761 3.37836 3.59241 3.77618 3.99159 4.06676 4.06981 4.11685 4.24203 4.30578 4.30949 4.36357 4.45302 4.51648 4.54178 4.60858 4.70772 4.84962 4.87085 4.91528 4.96393 4.97773 5.05761 5.06991 5.27700 5.42417 5.42464 5.43837 5.61976 5.88830 6.13917 6.20672 6.65554 7.07986 7.33203 7.38980 8.75725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.003071 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.674573 B = 9114.140465 C =11497.344487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.197 4.197 3 C -0.063 4.063 4 O 0.083 5.917 5 N -0.398 5.398 6 C 0.009 3.991 7 C 0.145 3.855 8 N -0.686 5.686 9 C 0.068 3.932 10 C 0.180 3.820 11 H 0.061 0.939 12 N -0.690 5.690 13 C 0.536 3.464 14 O -0.559 6.559 15 C -0.128 4.128 16 S -0.148 6.148 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.151 4.151 26 C -0.164 4.164 27 C -0.212 4.212 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.252 0.748 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.336 0.664 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.271 0.729 41 H 0.137 0.863 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 0.751 -28.439 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.202 4.202 3 C -0.144 4.144 4 O 0.019 5.981 5 N -0.105 5.105 6 C -0.150 4.150 7 C 0.016 3.984 8 N -0.317 5.317 9 C -0.061 4.061 10 C 0.075 3.925 11 H 0.079 0.921 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.438 6.438 15 C -0.279 4.279 16 S 0.079 5.921 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.818 3.182 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.171 4.171 26 C -0.201 4.201 27 C -0.249 4.249 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.067 0.933 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.117 -0.582 -27.231 27.260 hybrid contribution -1.419 1.228 -0.043 1.877 sum -0.302 0.646 -27.274 27.283 Atomic orbital electron populations 1.20137 0.85519 1.04134 1.03090 1.21690 0.99996 0.91014 1.07451 1.26560 0.81963 1.02872 1.02972 1.84759 1.30643 1.15151 1.67585 1.73838 1.23817 0.92278 1.20551 1.23783 0.88505 0.99619 1.03124 1.20204 1.02250 0.85620 0.90366 1.60406 1.40043 1.18884 1.12376 1.22176 1.03114 0.87175 0.93672 1.20447 0.92434 0.87293 0.92352 0.92116 1.45569 1.35923 1.47520 1.05282 1.19909 0.83873 0.80950 0.83092 1.90642 1.37217 1.47999 1.67893 1.23343 1.02289 1.02625 0.99639 1.85536 1.46403 1.61556 0.98569 1.23180 1.18772 1.31358 0.96217 0.90075 1.26113 0.98957 0.98142 0.95854 1.70183 1.37515 1.43404 1.03748 0.85029 0.77911 0.78191 0.77039 1.18576 1.20430 1.18642 1.22737 1.00111 0.96559 0.97660 1.22944 0.90502 1.03272 1.03389 1.23257 1.04509 1.01162 0.96019 0.91005 0.89513 0.90184 0.73212 0.86537 0.93341 0.84673 0.87543 0.91826 0.74774 0.87993 0.87770 0.92049 0.84575 0.89767 0.87203 0.88661 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.37 71.24 0.74 0.02 16 2 C -0.20 -3.03 6.32 -19.73 -0.12 -3.16 16 3 C -0.06 -0.88 12.26 67.18 0.82 -0.05 16 4 O 0.08 1.71 11.20 71.69 0.80 2.52 16 5 N -0.40 -9.36 12.07 -49.56 -0.60 -9.95 16 6 C 0.01 0.16 6.84 43.58 0.30 0.46 16 7 C 0.14 2.04 6.19 85.56 0.53 2.57 16 8 N -0.69 -11.11 6.21 -517.93 -3.22 -14.32 16 9 C 0.07 0.88 5.23 86.30 0.45 1.33 16 10 C 0.18 3.74 2.67 44.99 0.12 3.86 16 11 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 12 N -0.69 -16.76 3.34 -442.52 -1.48 -18.24 16 13 C 0.54 19.42 6.68 87.66 0.59 20.00 16 14 O -0.56 -25.22 12.89 -3.05 -0.04 -25.26 16 15 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 16 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 17 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 18 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 21 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 25 C -0.15 -2.97 5.70 -10.79 -0.06 -3.04 16 26 C -0.16 -3.55 9.74 30.62 0.30 -3.25 16 27 C -0.21 -5.86 9.82 30.62 0.30 -5.56 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.64 7.66 -2.38 -0.02 0.62 16 31 H 0.25 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.12 1.11 7.66 -2.39 -0.02 1.09 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.34 7.02 8.72 -89.69 -0.78 6.24 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.42 7.93 8.60 -92.71 -0.80 7.13 16 38 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 39 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.14 1.89 8.11 -2.38 -0.02 1.87 16 42 H 0.08 2.03 6.67 -2.39 -0.02 2.01 16 43 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.08 3.04 5.02 -2.38 -0.01 3.02 16 Total: -1.00 -80.14 390.84 1.58 -78.56 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.55 Total: 27.70 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 5.51 Total: -21.09 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -5.01 Total: -98.78 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.76 Total: -22.75 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -80.14 1.58 -78.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.105 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds