Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30261 * 125.61625 * 2 1 4 4 C 1.34488 * 108.69625 * 179.73560 * 3 2 1 5 5 C 1.50691 * 126.16222 * 180.27117 * 4 3 2 6 6 C 1.34327 * 107.66768 * 0.39420 * 4 3 2 7 7 C 1.50698 * 126.44363 * 179.87395 * 6 4 3 8 8 N 1.46899 * 109.46991 * 89.71083 * 7 6 4 9 9 C 1.47486 * 110.99656 * 94.03511 * 8 7 6 10 10 C 1.53514 * 87.93369 * 138.70232 * 9 8 7 11 11 C 1.47487 * 110.99880 * 190.00244 * 8 7 6 12 12 H 1.08996 * 113.47292 * 336.12159 * 11 8 7 13 13 C 1.52999 * 113.47553 * 106.53241 * 11 8 7 14 14 N 1.46497 * 109.46992 * 304.99890 * 13 11 8 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47282 * 119.99523 * 23 21 19 26 26 H 1.48500 * 109.47237 * 240.00020 * 23 21 19 27 27 O 1.33963 * 125.62172 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47178 * 270.02142 * 1 2 3 29 29 H 1.09009 * 109.47505 * 30.02107 * 1 2 3 30 30 H 1.09001 * 109.47342 * 150.01920 * 1 2 3 31 31 H 1.08999 * 109.47576 * 270.14567 * 5 4 3 32 32 H 1.09001 * 109.47593 * 30.14863 * 5 4 3 33 33 H 1.09000 * 109.47380 * 150.15003 * 5 4 3 34 34 H 1.09007 * 109.46764 * 329.71743 * 7 6 4 35 35 H 1.08994 * 109.47747 * 209.71707 * 7 6 4 36 36 H 1.09000 * 113.46960 * 253.46868 * 9 8 7 37 37 H 1.08998 * 113.47779 * 23.87661 * 9 8 7 38 38 H 1.08992 * 114.17011 * 220.32977 * 10 9 8 39 39 H 1.08998 * 114.16840 * 87.61493 * 10 9 8 40 40 H 1.08995 * 109.46838 * 184.99777 * 13 11 8 41 41 H 1.09001 * 109.46617 * 65.00112 * 13 11 8 42 42 H 0.97000 * 120.00580 * 0.02562 * 14 13 11 43 43 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 44 44 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 45 45 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6675 0.0059 5 6 4.7569 1.5727 0.0137 6 6 3.5697 -0.6756 0.0007 7 6 4.7936 -1.5549 0.0017 8 7 5.1904 -1.8402 1.3870 9 6 4.6060 -3.1117 1.8529 10 6 5.9518 -3.4203 2.5239 11 6 6.5113 -2.4947 1.4343 12 1 6.7711 -3.0152 0.5126 13 6 7.6294 -1.5757 1.9302 14 7 7.6654 -0.3633 1.1088 15 6 8.5763 0.5967 1.3640 16 8 9.3665 0.4567 2.2734 17 6 8.6174 1.8412 0.5151 18 16 9.9440 2.9257 1.0981 19 6 9.7694 4.2610 -0.0382 20 1 9.0031 4.2263 -0.7985 21 6 10.6158 5.3579 0.0444 22 7 11.5488 5.4009 0.9720 23 14 10.4302 6.7738 -1.1598 24 1 9.3150 6.4838 -2.0967 25 1 10.1375 8.0236 -0.4131 26 1 11.6906 6.9393 -1.9274 27 8 2.2872 -1.0890 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 5.0512 1.7950 -1.0120 32 1 4.5111 2.5005 0.5303 33 1 5.5802 1.0774 0.5285 34 1 5.6083 -1.0441 -0.5117 35 1 4.5699 -2.4897 -0.5121 36 1 3.7879 -2.9797 2.5610 37 1 4.3561 -3.7973 1.0432 38 1 6.2682 -4.4592 2.4325 39 1 6.0466 -3.0264 3.5358 40 1 8.5855 -2.0938 1.8555 41 1 7.4431 -1.3051 2.9696 42 1 7.0333 -0.2510 0.3816 43 1 8.8026 1.5667 -0.5235 44 1 7.6632 2.3628 0.5884 45 1 12.1406 6.1673 1.0296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269201049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = 20.866617 kcal Electronic energy + Delta-G solvation = -27089.741343 eV Core-core repulsion = 23236.489273 eV Total energy + Delta-G solvation = -3853.252070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.53781 -40.84326 -38.86603 -35.34933 -34.36673 -33.88973 -32.40414 -31.34031 -30.03571 -29.40113 -27.59960 -26.98126 -25.45438 -23.92586 -23.30354 -21.92234 -20.76087 -20.50888 -20.05297 -17.88656 -17.33900 -16.97275 -16.45890 -16.24655 -16.12154 -15.49868 -15.08404 -14.83849 -14.77982 -14.57469 -14.07582 -13.87589 -13.60974 -13.53406 -13.28153 -13.22740 -13.00952 -12.81140 -12.65521 -12.51391 -12.11446 -12.06301 -11.95700 -11.68318 -11.54580 -11.05266 -11.02062 -10.99341 -10.99075 -10.72138 -10.64156 -9.78591 -9.50602 -9.32719 -9.05451 -8.85309 -8.71170 -8.20503 -6.47303 -6.19559 -3.89659 1.18376 2.35744 2.47913 3.01111 3.12947 3.23570 3.28968 3.33381 3.49835 3.74593 3.78226 3.97167 4.22491 4.27956 4.32545 4.59626 4.63505 4.72629 4.78632 4.81506 4.91550 4.99362 5.05053 5.15817 5.18243 5.18579 5.27298 5.33353 5.47691 5.52018 5.56693 5.61565 5.63396 5.70260 5.75931 5.87779 5.88924 5.92174 5.97422 6.13837 6.26223 6.49976 6.62687 7.57631 7.62279 7.69792 8.37802 8.63226 9.26107 10.87918 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.002999 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.708223 B = 9333.965537 C =11589.016464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.187 3.813 3 N -0.480 5.480 4 C 0.017 3.983 5 C -0.080 4.080 6 C -0.048 4.048 7 C 0.106 3.894 8 N -0.460 5.460 9 C -0.002 4.002 10 C -0.132 4.132 11 C 0.014 3.986 12 H 0.088 0.912 13 C 0.139 3.861 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.155 4.155 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.203 6.203 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.391 0.609 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.570 -19.988 -2.783 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.019 4.019 3 N -0.210 5.210 4 C -0.104 4.104 5 C -0.138 4.138 6 C -0.101 4.101 7 C -0.022 4.022 8 N -0.183 5.183 9 C -0.130 4.130 10 C -0.170 4.170 11 C -0.095 4.095 12 H 0.106 0.894 13 C 0.014 3.986 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.306 4.306 18 S 0.168 5.832 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 O -0.090 6.090 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.468 -18.917 -0.852 27.159 hybrid contribution -1.098 -0.181 -2.774 2.989 sum -20.566 -19.098 -3.625 28.299 Atomic orbital electron populations 1.20236 0.81378 1.04982 1.04646 1.26205 0.96330 0.78732 1.00677 1.70398 1.01791 1.30237 1.18602 1.21526 0.93269 0.92009 1.03564 1.20269 0.91835 0.98554 1.03096 1.22655 0.83016 0.94621 1.09819 1.21043 0.90979 0.97912 0.92288 1.69048 1.04078 1.27599 1.17593 1.23864 0.98581 0.90561 1.00024 1.23168 0.95068 0.99639 0.99133 1.23775 0.90997 0.94996 0.99774 0.89391 1.21253 0.96743 0.84760 0.95806 1.46001 1.36910 1.19818 1.36320 1.20301 0.79739 0.83750 0.84470 1.90704 1.39069 1.78490 1.30782 1.23560 1.07138 0.97700 1.02168 1.85405 1.37415 1.15823 1.44568 1.22906 1.21413 1.05188 1.18686 0.90868 1.24988 0.94522 0.98013 0.96074 1.70029 1.17981 1.30322 1.31985 0.86130 0.78163 0.81036 0.80252 1.19590 1.20562 1.20617 1.84322 1.16564 1.37739 1.70401 0.88975 0.88104 0.89527 0.90400 0.89933 0.90460 0.87922 0.91421 0.89443 0.90942 0.89860 0.88099 0.90939 0.90765 0.77387 0.89358 0.89196 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.00 0.38 0.05 16 2 C 0.19 2.06 8.34 -12.95 -0.11 1.96 16 3 N -0.48 -6.56 11.30 -7.36 -0.08 -6.65 16 4 C 0.02 0.22 7.11 -82.81 -0.59 -0.37 16 5 C -0.08 -0.98 10.05 36.00 0.36 -0.62 16 6 C -0.05 -0.55 6.97 -35.69 -0.25 -0.80 16 7 C 0.11 0.92 4.72 -4.98 -0.02 0.90 16 8 N -0.46 -4.14 5.88 -237.90 -1.40 -5.54 16 9 C 0.00 -0.01 7.71 -7.53 -0.06 -0.07 16 10 C -0.13 -0.83 8.00 -26.20 -0.21 -1.04 16 11 C 0.01 0.11 3.23 -71.42 -0.23 -0.12 16 12 H 0.09 0.55 7.91 -51.93 -0.41 0.14 16 13 C 0.14 1.56 5.81 -4.04 -0.02 1.54 16 14 N -0.73 -9.86 5.36 -60.30 -0.32 -10.18 16 15 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 16 O -0.52 -11.72 15.86 5.55 0.09 -11.63 16 17 C -0.16 -3.12 6.16 36.01 0.22 -2.90 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 19 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 O -0.20 -2.32 10.77 5.37 0.06 -2.26 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.92 6.12 -51.93 -0.32 0.61 16 34 H 0.10 0.81 5.93 -51.92 -0.31 0.50 16 35 H 0.07 0.47 7.30 -51.93 -0.38 0.09 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.41 7.42 -51.93 -0.39 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 42 H 0.39 4.40 4.67 -40.82 -0.19 4.21 16 43 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -37.08 387.99 -9.32 -46.40 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.58 Total: 1.38 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -0.42 Total: -4.54 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -1.07 Total: -47.88 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.15 Total: -13.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.08 -9.32 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269201049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.264 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds