Wall clock time and date at job start Sat Apr 11 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 122.44785 * 2 1 4 4 S 1.70621 * 110.95374 * 179.78661 * 3 2 1 5 5 C 1.75828 * 91.56239 * 0.30487 * 4 3 2 6 6 C 1.46586 * 125.45960 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00004 * 179.69751 * 6 5 4 8 8 N 1.34779 * 119.99867 * 359.69058 * 6 5 4 9 9 C 1.46497 * 119.99900 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47145 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.46695 * 55.00137 * 10 9 8 12 12 C 1.52997 * 109.47018 * 295.00697 * 10 9 8 13 13 C 1.52993 * 109.47169 * 175.00074 * 10 9 8 14 14 N 1.46905 * 109.47039 * 185.00340 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00414 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99992 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47309 * 89.99614 * 23 21 19 25 25 H 1.48496 * 109.47518 * 209.99740 * 23 21 19 26 26 H 1.48507 * 109.47020 * 329.99990 * 23 21 19 27 27 C 1.36655 * 109.08270 * 359.69779 * 5 4 3 28 28 H 1.09005 * 109.47042 * 269.97380 * 1 2 3 29 29 H 1.09001 * 109.47493 * 29.97165 * 1 2 3 30 30 H 1.09000 * 109.47269 * 149.97884 * 1 2 3 31 31 H 1.08003 * 124.52506 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99425 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47036 * 60.00440 * 9 8 6 34 34 H 1.08994 * 109.47323 * 300.00632 * 9 8 6 35 35 H 1.09008 * 109.46827 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.46936 * 299.99328 * 12 10 9 37 37 H 1.08996 * 109.47633 * 59.99846 * 12 10 9 38 38 H 1.09001 * 109.47393 * 65.00621 * 13 10 9 39 39 H 1.08998 * 109.47408 * 305.00267 * 13 10 9 40 40 H 1.00901 * 110.99869 * 56.04956 * 14 13 10 41 41 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 42 42 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 43 43 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00755 * 180.02562 * 22 21 19 45 45 H 1.08005 * 123.34710 * 180.24917 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0059 5 6 3.5937 -0.9427 -0.0009 6 6 4.6231 -1.9862 -0.0005 7 8 4.3002 -3.1596 0.0000 8 7 5.9273 -1.6463 -0.0007 9 6 6.9562 -2.6892 -0.0009 10 6 8.3413 -2.0392 -0.0018 11 1 8.4202 -1.3509 0.8398 12 6 8.5432 -1.2711 -1.3095 13 6 9.4134 -3.1234 0.1237 14 7 10.7352 -2.4934 0.2433 15 6 11.7920 -3.5064 0.3654 16 6 13.1302 -2.8241 0.4864 17 8 13.1970 -1.6131 0.4717 18 7 14.2529 -3.5595 0.6097 19 6 15.4703 -2.9388 0.7192 20 1 15.5299 -1.8605 0.7062 21 6 16.6278 -3.6969 0.8470 22 7 17.7948 -3.1020 0.9514 23 14 16.5250 -5.5620 0.8688 24 1 16.6357 -6.0801 -0.5184 25 1 17.6334 -6.1093 1.6916 26 1 15.2239 -5.9792 1.4506 27 6 2.2446 -1.1600 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.8025 2.1232 0.0004 32 1 6.1847 -0.7110 -0.0009 33 1 6.8454 -3.3087 -0.8909 34 1 6.8457 -3.3087 0.8890 35 1 9.5302 -0.8084 -1.3103 36 1 8.4643 -1.9593 -2.1510 37 1 7.7794 -0.4987 -1.3989 38 1 9.3927 -3.7592 -0.7614 39 1 9.2174 -3.7274 1.0096 40 1 10.7598 -1.8493 1.0195 41 1 11.6126 -4.1135 1.2529 42 1 11.7876 -4.1445 -0.5182 43 1 14.1996 -4.5280 0.6211 44 1 18.6029 -3.6313 1.0402 45 1 1.8019 -2.1452 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270402813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:18 Heat of formation + Delta-G solvation = -46.890564 kcal Electronic energy + Delta-G solvation = -25262.169888 eV Core-core repulsion = 21405.979646 eV Total energy + Delta-G solvation = -3856.190242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18705 -38.67657 -38.44066 -37.23450 -35.00802 -33.92838 -32.59647 -31.65815 -31.33067 -28.40247 -27.60241 -27.07350 -25.22591 -24.11135 -22.85692 -21.11007 -20.64339 -19.45491 -19.37306 -18.76981 -18.24830 -16.72983 -16.36312 -16.02548 -15.90548 -15.54932 -15.11706 -15.00440 -14.62625 -14.39673 -14.24500 -13.99730 -13.64152 -13.61218 -13.36899 -13.20528 -12.73638 -12.67688 -12.60196 -12.44418 -12.42826 -12.09022 -12.03384 -11.81193 -11.40899 -11.26124 -11.13360 -11.09688 -10.95182 -10.59840 -10.42161 -9.98060 -9.57692 -9.53256 -9.25873 -8.88622 -8.60220 -8.20114 -8.14633 -6.31581 -3.83079 0.05242 1.00422 1.40834 1.89094 2.73211 2.83532 3.02318 3.06940 3.15058 3.73606 4.04896 4.10443 4.31660 4.46967 4.63300 4.64221 4.71830 4.80600 4.82462 4.98088 5.07233 5.13175 5.21485 5.26075 5.36540 5.37846 5.43486 5.53136 5.60135 5.61031 5.76083 5.80420 5.82743 5.83933 5.91484 5.92815 5.96536 6.13299 6.34383 7.05386 7.06102 7.54480 7.57948 7.77829 8.13996 8.59281 8.94479 9.42042 9.82195 10.81521 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.001513 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.271502 B =18497.177603 C =19082.116934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.118 4.118 3 C -0.234 4.234 4 S 0.203 5.797 5 C -0.265 4.265 6 C 0.590 3.410 7 O -0.530 6.530 8 N -0.722 5.722 9 C 0.125 3.875 10 C -0.101 4.101 11 H 0.078 0.922 12 C -0.142 4.142 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.052 4.052 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.169 0.831 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.350 0.650 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.726 4.222 -1.871 34.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C -0.371 4.371 4 S 0.471 5.529 5 C -0.385 4.385 6 C 0.376 3.624 7 O -0.408 6.408 8 N -0.374 5.374 9 C 0.001 3.999 10 C -0.120 4.120 11 H 0.096 0.904 12 C -0.199 4.199 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.085 4.085 16 C 0.236 3.764 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.086 4.086 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -32.208 5.175 -2.527 32.719 hybrid contribution -1.207 -2.157 0.965 2.654 sum -33.415 3.018 -1.563 33.588 Atomic orbital electron populations 1.20527 0.89252 1.03015 1.02563 1.18804 0.98077 0.91467 1.04719 1.25168 0.98474 1.03483 1.10020 1.83063 1.04111 0.97994 1.67707 1.24613 0.98021 0.97292 1.18605 1.16929 0.81642 0.87392 0.76459 1.90842 1.81697 1.18215 1.50029 1.45869 1.05374 1.10613 1.75522 1.21456 0.85755 0.89830 1.02828 1.21357 0.92374 0.98026 1.00267 0.90371 1.21775 1.02811 0.99561 0.95738 1.21891 0.88423 0.95221 1.00842 1.60023 1.01109 1.17658 1.51033 1.21700 0.91508 0.94143 1.01112 1.19708 0.84747 0.88060 0.83920 1.90561 1.86412 1.13687 1.54044 1.42208 1.06847 1.07493 1.66460 1.19434 0.80914 0.95624 1.47473 0.86287 1.25033 0.94982 0.98495 0.97594 1.69617 0.97778 1.35877 1.48858 0.86670 0.78309 0.85461 0.78928 1.19586 1.20192 1.19537 1.20682 0.90984 1.00056 0.96843 0.91032 0.91409 0.91180 0.81336 0.76611 0.90819 0.91106 0.90225 0.92659 0.93727 0.90620 0.95158 0.83038 0.93751 0.89431 0.79677 0.91610 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.13 36.01 0.36 -0.04 16 2 C -0.12 -0.78 5.78 -106.46 -0.62 -1.39 16 3 C -0.23 -1.37 10.67 29.18 0.31 -1.06 16 4 S 0.20 1.27 22.16 -107.50 -2.38 -1.11 16 5 C -0.26 -2.38 6.45 -36.79 -0.24 -2.62 16 6 C 0.59 6.46 7.78 -12.89 -0.10 6.36 16 7 O -0.53 -7.60 16.84 5.19 0.09 -7.51 16 8 N -0.72 -6.42 5.28 -61.65 -0.33 -6.75 16 9 C 0.12 1.14 5.06 -4.04 -0.02 1.12 16 10 C -0.10 -0.92 2.57 -90.62 -0.23 -1.15 16 11 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 12 C -0.14 -1.36 8.95 37.16 0.33 -1.02 16 13 C 0.07 0.71 5.07 -3.82 -0.02 0.69 16 14 N -0.67 -9.62 5.58 -115.06 -0.64 -10.26 16 15 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 16 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 17 O -0.57 -14.95 15.78 5.55 0.09 -14.87 16 18 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 19 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 23 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 27 C -0.05 -0.43 9.80 -40.44 -0.40 -0.83 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 30 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.40 2.83 6.77 -40.82 -0.28 2.55 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.94 7.75 -51.92 -0.40 0.54 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.36 7.18 -51.93 -0.37 -0.02 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.35 5.25 8.43 -39.29 -0.33 4.92 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.52 392.30 -8.90 -43.42 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.67 Total: 12.47 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.98 Total: 3.04 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.25 Total: -55.96 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.17 Total: -22.38 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.38 Total: -1.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.52 -8.90 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270402813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.466 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds