Wall clock time and date at job start Sat Apr 11 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 122.44785 * 2 1 4 4 S 1.70621 * 110.95374 * 179.78661 * 3 2 1 5 5 C 1.75828 * 91.56239 * 0.30487 * 4 3 2 6 6 C 1.46586 * 125.45960 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00004 * 179.69751 * 6 5 4 8 8 N 1.34779 * 119.99867 * 359.69058 * 6 5 4 9 9 C 1.46497 * 119.99900 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47145 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.46695 * 55.00137 * 10 9 8 12 12 C 1.52997 * 109.47018 * 295.00697 * 10 9 8 13 13 C 1.52993 * 109.47169 * 175.00074 * 10 9 8 14 14 N 1.46905 * 109.47039 * 185.00340 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00414 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99992 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47309 * 89.99614 * 23 21 19 25 25 H 1.48496 * 109.47518 * 209.99740 * 23 21 19 26 26 H 1.48507 * 109.47020 * 329.99990 * 23 21 19 27 27 C 1.36655 * 109.08270 * 359.69779 * 5 4 3 28 28 H 1.09005 * 109.47042 * 269.97380 * 1 2 3 29 29 H 1.09001 * 109.47493 * 29.97165 * 1 2 3 30 30 H 1.09000 * 109.47269 * 149.97884 * 1 2 3 31 31 H 1.08003 * 124.52506 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99425 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47036 * 60.00440 * 9 8 6 34 34 H 1.08994 * 109.47323 * 300.00632 * 9 8 6 35 35 H 1.09008 * 109.46827 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.46936 * 299.99328 * 12 10 9 37 37 H 1.08996 * 109.47633 * 59.99846 * 12 10 9 38 38 H 1.09001 * 109.47393 * 65.00621 * 13 10 9 39 39 H 1.08998 * 109.47408 * 305.00267 * 13 10 9 40 40 H 1.00901 * 110.99869 * 56.04956 * 14 13 10 41 41 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 42 42 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 43 43 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00755 * 180.02562 * 22 21 19 45 45 H 1.08005 * 123.34710 * 180.24917 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0059 5 6 3.5937 -0.9427 -0.0009 6 6 4.6231 -1.9862 -0.0005 7 8 4.3002 -3.1596 0.0000 8 7 5.9273 -1.6463 -0.0007 9 6 6.9562 -2.6892 -0.0009 10 6 8.3413 -2.0392 -0.0018 11 1 8.4202 -1.3509 0.8398 12 6 8.5432 -1.2711 -1.3095 13 6 9.4134 -3.1234 0.1237 14 7 10.7352 -2.4934 0.2433 15 6 11.7920 -3.5064 0.3654 16 6 13.1302 -2.8241 0.4864 17 8 13.1970 -1.6131 0.4717 18 7 14.2529 -3.5595 0.6097 19 6 15.4703 -2.9388 0.7192 20 1 15.5299 -1.8605 0.7062 21 6 16.6278 -3.6969 0.8470 22 7 17.7948 -3.1020 0.9514 23 14 16.5250 -5.5620 0.8688 24 1 16.6357 -6.0801 -0.5184 25 1 17.6334 -6.1093 1.6916 26 1 15.2239 -5.9792 1.4506 27 6 2.2446 -1.1600 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.8025 2.1232 0.0004 32 1 6.1847 -0.7110 -0.0009 33 1 6.8454 -3.3087 -0.8909 34 1 6.8457 -3.3087 0.8890 35 1 9.5302 -0.8084 -1.3103 36 1 8.4643 -1.9593 -2.1510 37 1 7.7794 -0.4987 -1.3989 38 1 9.3927 -3.7592 -0.7614 39 1 9.2174 -3.7274 1.0096 40 1 10.7598 -1.8493 1.0195 41 1 11.6126 -4.1135 1.2529 42 1 11.7876 -4.1445 -0.5182 43 1 14.1996 -4.5280 0.6211 44 1 18.6029 -3.6313 1.0402 45 1 1.8019 -2.1452 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270402813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:18 Heat of formation + Delta-G solvation = -73.358881 kcal Electronic energy + Delta-G solvation = -25263.317641 eV Core-core repulsion = 21405.979646 eV Total energy + Delta-G solvation = -3857.337994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97255 -40.29745 -39.12693 -38.20454 -36.22833 -35.70831 -33.78566 -33.48075 -31.90206 -29.04149 -28.75636 -27.80722 -26.59859 -25.21551 -23.91631 -21.87454 -21.50025 -21.17164 -20.24060 -19.96829 -19.34279 -17.80282 -17.31958 -17.10540 -16.91452 -16.75164 -16.51577 -15.91991 -15.70675 -15.55513 -14.99565 -14.94978 -14.81866 -14.56213 -14.42079 -14.36786 -14.07389 -13.84434 -13.48106 -13.23732 -13.15485 -13.03791 -12.91144 -12.84426 -12.80511 -12.40664 -12.04200 -12.02464 -11.96151 -11.87157 -11.73241 -11.50536 -11.27999 -10.42434 -10.31255 -10.23941 -9.83700 -9.36258 -9.28576 -8.40746 -6.01582 -0.53422 0.46741 0.90210 1.30901 1.32074 1.36354 1.44987 1.96882 1.99617 2.09342 2.23541 2.75996 3.15852 3.41918 3.68393 3.85165 3.97109 4.04116 4.06399 4.18251 4.19400 4.37921 4.45024 4.48990 4.56122 4.62498 4.68210 4.72745 4.82821 4.84847 4.89121 4.96123 5.04915 5.06885 5.18547 5.35730 5.38715 5.45976 5.51913 5.53252 5.91247 6.05511 6.32673 6.41821 6.60607 6.88913 7.00948 7.40861 7.97405 8.76872 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.001513 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.271502 B =18497.177603 C =19082.116934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.130 4.130 3 C -0.227 4.227 4 S 0.236 5.764 5 C -0.298 4.298 6 C 0.588 3.412 7 O -0.573 6.573 8 N -0.713 5.713 9 C 0.131 3.869 10 C -0.090 4.090 11 H 0.083 0.917 12 C -0.138 4.138 13 C 0.068 3.932 14 N -0.681 5.681 15 C 0.062 3.938 16 C 0.449 3.551 17 O -0.613 6.613 18 N -0.592 5.592 19 C -0.330 4.330 20 H 0.055 0.945 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.231 1.231 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.408 0.592 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.345 0.655 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.132 2.723 -1.860 36.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C -0.365 4.365 4 S 0.505 5.495 5 C -0.418 4.418 6 C 0.375 3.625 7 O -0.455 6.455 8 N -0.364 5.364 9 C 0.007 3.993 10 C -0.109 4.109 11 H 0.101 0.899 12 C -0.196 4.196 13 C -0.061 4.061 14 N -0.314 5.314 15 C -0.070 4.070 16 C 0.237 3.763 17 O -0.498 6.498 18 N -0.234 5.234 19 C -0.459 4.459 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.154 1.154 27 C -0.093 4.093 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.163 0.837 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -34.634 3.697 -2.522 34.922 hybrid contribution -0.504 -1.477 0.945 1.824 sum -35.138 2.221 -1.577 35.243 Atomic orbital electron populations 1.20577 0.87705 1.03782 1.03200 1.18989 0.99272 0.90966 1.05032 1.25574 0.98269 1.04502 1.08170 1.82897 1.04370 0.95406 1.66797 1.24559 0.97816 0.98661 1.20783 1.17225 0.82344 0.87268 0.75656 1.90806 1.82392 1.20003 1.52297 1.45798 1.04866 1.11142 1.74642 1.21364 0.85569 0.89788 1.02594 1.21232 0.91872 0.97645 1.00153 0.89876 1.21725 1.01913 0.99912 0.96015 1.21951 0.86671 0.95625 1.01851 1.60016 1.02467 1.17819 1.51076 1.21622 0.87659 0.94074 1.03690 1.21007 0.86618 0.87713 0.81004 1.90541 1.87542 1.16345 1.55359 1.42042 1.05699 1.08402 1.67215 1.19019 0.83763 0.93384 1.49725 0.92639 1.26097 0.93662 1.05462 0.96032 1.69800 0.99000 1.38874 1.49843 0.85370 0.80118 0.76326 0.79736 1.18225 1.20076 1.15447 1.20843 0.91182 1.00608 0.96661 0.90420 0.90013 0.91101 0.78725 0.75505 0.91213 0.91260 0.92567 0.92737 0.92221 0.89878 0.93621 0.83656 0.90611 0.86867 0.77482 0.91165 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.13 71.24 0.72 0.08 16 2 C -0.13 -1.52 5.78 -21.05 -0.12 -1.65 16 3 C -0.23 -2.12 10.67 66.81 0.71 -1.41 16 4 S 0.24 2.54 22.16 -56.49 -1.25 1.29 16 5 C -0.30 -5.21 6.45 24.08 0.16 -5.05 16 6 C 0.59 12.77 7.78 86.42 0.67 13.45 16 7 O -0.57 -16.78 16.84 -4.34 -0.07 -16.85 16 8 N -0.71 -11.98 5.28 -467.18 -2.47 -14.45 16 9 C 0.13 2.20 5.06 86.38 0.44 2.63 16 10 C -0.09 -1.47 2.57 -10.80 -0.03 -1.50 16 11 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 12 C -0.14 -2.48 8.95 71.98 0.64 -1.83 16 13 C 0.07 1.28 5.07 86.30 0.44 1.72 16 14 N -0.68 -18.46 5.58 -517.93 -2.89 -21.35 16 15 C 0.06 1.81 6.17 85.56 0.53 2.34 16 16 C 0.45 19.91 7.82 87.66 0.69 20.60 16 17 O -0.61 -33.52 15.78 -3.07 -0.05 -33.57 16 18 N -0.59 -27.68 5.09 -306.99 -1.56 -29.25 16 19 C -0.33 -19.29 10.16 84.04 0.85 -18.43 16 20 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.93 -56.31 13.96 21.66 0.30 -56.01 16 23 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 27 C -0.06 -0.96 9.80 21.72 0.21 -0.75 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 0.33 8.12 -2.39 -0.02 0.31 16 30 H 0.07 0.47 8.13 -2.39 -0.02 0.45 16 31 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.41 5.20 6.77 -92.71 -0.63 4.57 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.30 7.75 -2.38 -0.02 1.28 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.86 7.18 -2.39 -0.02 0.85 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.34 9.98 8.43 -89.69 -0.76 9.23 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.39 15.04 5.76 -92.71 -0.53 14.51 16 44 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -80.94 392.30 -0.65 -81.59 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.94 Total: 38.14 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.38 Total: 9.89 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -6.62 Total: -121.05 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.12 Total: -50.42 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.25 Total: 1.29 kcal Total: -80.94 -0.65 -81.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270402813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.227 kcal (2) G-P(sol) polarization free energy of solvation -80.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds