Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33810 * 122.45091 * 2 1 4 4 S 1.70624 * 110.95482 * 179.78991 * 3 2 1 5 5 C 1.75829 * 91.55949 * 0.30307 * 4 3 2 6 6 C 1.46587 * 125.45727 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00303 * 179.69327 * 6 5 4 8 8 N 1.34781 * 119.99812 * 359.69951 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00498 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99920 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47441 * 89.99762 * 23 21 19 25 25 H 1.48495 * 109.46914 * 210.00201 * 23 21 19 26 26 H 1.48508 * 109.46806 * 329.99819 * 23 21 19 27 27 C 1.36643 * 109.08752 * 359.70207 * 5 4 3 28 28 H 1.09004 * 109.46581 * 269.97857 * 1 2 3 29 29 H 1.09004 * 109.47242 * 29.96797 * 1 2 3 30 30 H 1.08990 * 109.47411 * 149.97666 * 1 2 3 31 31 H 1.08000 * 124.52831 * 0.02618 * 3 2 1 32 32 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 34 34 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 35 35 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 39 39 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 40 40 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 42 42 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 43 43 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00283 * 180.02562 * 22 21 19 45 45 H 1.08002 * 123.35553 * 180.24375 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7891 0.0058 5 6 3.5936 -0.9428 -0.0010 6 6 4.6230 -1.9864 -0.0006 7 8 4.3000 -3.1598 0.0000 8 7 5.9273 -1.6465 -0.0008 9 6 6.9561 -2.6894 0.0002 10 6 8.3411 -2.0395 0.0004 11 1 8.4200 -1.3520 -0.8418 12 6 8.5434 -1.2703 1.3074 13 6 9.4133 -3.1239 -0.1244 14 7 10.7350 -2.4941 -0.2446 15 6 11.7917 -3.5072 -0.3672 16 6 13.1300 -2.8250 -0.4888 17 8 13.1969 -1.6140 -0.4742 18 7 14.2524 -3.5606 -0.6137 19 6 15.4699 -2.9400 -0.7238 20 1 15.5295 -1.8617 -0.7108 21 6 16.6271 -3.6982 -0.8520 22 7 17.7941 -3.1035 -0.9580 23 14 16.5241 -5.5633 -0.8737 24 1 16.3580 -6.0337 -2.2724 25 1 17.7708 -6.1345 -0.3041 26 1 15.3615 -6.0043 -0.0618 27 6 2.2446 -1.1601 -0.0006 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3634 0.8903 -0.5133 30 1 -0.3634 -0.8897 -0.5141 31 1 1.8027 2.1232 0.0004 32 1 6.1847 -0.7113 -0.0008 33 1 6.8454 -3.3097 -0.8893 34 1 6.8453 -3.3081 0.8907 35 1 9.5303 -0.8076 1.3078 36 1 7.7795 -0.4978 1.3963 37 1 8.4645 -1.9579 2.1495 38 1 9.2171 -3.7286 -1.0097 39 1 9.3926 -3.7589 0.7613 40 1 10.9137 -1.8771 0.5336 41 1 11.7877 -4.1452 0.5166 42 1 11.6118 -4.1142 -1.2544 43 1 14.1988 -4.5290 -0.6250 44 1 18.6019 -3.6328 -1.0479 45 1 1.8018 -2.1452 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270402815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = -46.555180 kcal Electronic energy + Delta-G solvation = -25267.191439 eV Core-core repulsion = 21411.015740 eV Total energy + Delta-G solvation = -3856.175699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19090 -38.69743 -38.44125 -37.28815 -35.01003 -33.93151 -32.57651 -31.65748 -31.32997 -28.40770 -27.59261 -27.20544 -25.29353 -24.11660 -22.87838 -21.11385 -20.49599 -19.45296 -19.39096 -18.75925 -18.27985 -16.79859 -16.46755 -16.05058 -15.85188 -15.62142 -15.13763 -14.92004 -14.67803 -14.37554 -14.22267 -14.02079 -13.63420 -13.59919 -13.36404 -13.10785 -12.88815 -12.78858 -12.64337 -12.45441 -12.43390 -12.29355 -12.01577 -11.75706 -11.41702 -11.26735 -11.19133 -11.05546 -10.98259 -10.59719 -10.42567 -9.97948 -9.57722 -9.53385 -9.25923 -8.88516 -8.60309 -8.20430 -8.15342 -6.31508 -3.83024 0.05363 1.00500 1.40882 1.89161 2.73158 2.83584 3.02403 3.07070 3.15126 3.73551 4.05619 4.10615 4.31458 4.47005 4.61810 4.64147 4.70964 4.76813 4.82561 4.90304 5.07325 5.13218 5.21392 5.28488 5.33694 5.35646 5.42813 5.49356 5.52096 5.62585 5.65816 5.76915 5.80439 5.83332 5.90726 5.91796 5.96732 6.05086 6.13405 7.05471 7.06537 7.55298 7.58093 7.77810 8.14003 8.59366 8.94497 9.42056 9.82177 10.81573 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.001513 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.706073 B =18498.101810 C =19082.997108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.118 4.118 3 C -0.234 4.234 4 S 0.202 5.798 5 C -0.265 4.265 6 C 0.590 3.410 7 O -0.529 6.529 8 N -0.722 5.722 9 C 0.126 3.874 10 C -0.103 4.103 11 H 0.091 0.909 12 C -0.154 4.154 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.052 4.052 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.169 0.831 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.351 0.649 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.656 4.184 3.658 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C -0.371 4.371 4 S 0.471 5.529 5 C -0.385 4.385 6 C 0.376 3.624 7 O -0.408 6.408 8 N -0.374 5.374 9 C 0.002 3.998 10 C -0.122 4.122 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.086 4.086 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.171 0.829 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -32.270 5.162 2.979 32.816 hybrid contribution -1.017 -2.169 0.847 2.541 sum -33.287 2.993 3.826 33.640 Atomic orbital electron populations 1.20526 0.89252 1.03025 1.02555 1.18807 0.98078 0.91467 1.04716 1.25166 0.98470 1.03483 1.10018 1.83064 1.04118 0.97994 1.67725 1.24609 0.98022 0.97291 1.18598 1.16928 0.81637 0.87392 0.76455 1.90842 1.81694 1.18211 1.50017 1.45871 1.05381 1.10607 1.75539 1.21439 0.85661 0.89815 1.02866 1.21382 0.92526 0.98353 0.99956 0.89116 1.21918 1.02564 1.00134 0.96507 1.21875 0.88784 0.95055 1.00639 1.60074 0.99824 1.19393 1.50891 1.21709 0.91428 0.94024 1.01370 1.19708 0.84657 0.88058 0.84030 1.90559 1.86365 1.13686 1.54113 1.42206 1.06837 1.07487 1.66457 1.19435 0.80948 0.95625 1.47440 0.86281 1.25034 0.94980 0.98497 0.97589 1.69621 0.97802 1.35873 1.48827 0.86671 0.78352 0.85442 0.78906 1.19583 1.20189 1.19534 1.20682 0.90986 1.00055 0.96839 0.91038 0.91407 0.91173 0.81340 0.76620 0.90821 0.91017 0.91224 0.92767 0.92525 0.90654 0.95058 0.82869 0.93718 0.89400 0.79668 0.91611 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.13 36.01 0.36 -0.04 16 2 C -0.12 -0.77 5.78 -106.45 -0.62 -1.39 16 3 C -0.23 -1.37 10.67 29.18 0.31 -1.05 16 4 S 0.20 1.27 22.16 -107.50 -2.38 -1.12 16 5 C -0.26 -2.37 6.45 -36.79 -0.24 -2.61 16 6 C 0.59 6.43 7.78 -12.89 -0.10 6.33 16 7 O -0.53 -7.57 16.84 5.19 0.09 -7.49 16 8 N -0.72 -6.39 5.28 -61.65 -0.33 -6.71 16 9 C 0.13 1.14 5.06 -4.05 -0.02 1.12 16 10 C -0.10 -0.94 2.63 -90.62 -0.24 -1.18 16 11 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 13 C 0.07 0.72 5.14 -3.82 -0.02 0.70 16 14 N -0.67 -9.87 6.12 -115.05 -0.70 -10.58 16 15 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 16 C 0.45 10.14 7.82 -10.99 -0.09 10.05 16 17 O -0.57 -15.06 15.78 5.55 0.09 -14.97 16 18 N -0.59 -14.02 5.09 -10.97 -0.06 -14.08 16 19 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 23 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C -0.05 -0.43 9.80 -40.44 -0.40 -0.83 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 30 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.40 2.80 6.77 -40.82 -0.28 2.52 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 36 H 0.05 0.39 7.18 -51.93 -0.37 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 5.34 6.68 -39.29 -0.26 5.08 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -34.77 390.04 -8.89 -43.65 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.54 Total: 12.63 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.99 Total: 3.10 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.31 Total: -56.30 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.38 Total: -1.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.77 -8.89 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270402815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.902 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds