Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33810 * 122.45091 * 2 1 4 4 S 1.70624 * 110.95482 * 179.78991 * 3 2 1 5 5 C 1.75829 * 91.55949 * 0.30307 * 4 3 2 6 6 C 1.46587 * 125.45727 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00303 * 179.69327 * 6 5 4 8 8 N 1.34781 * 119.99812 * 359.69951 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00498 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99920 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47441 * 89.99762 * 23 21 19 25 25 H 1.48495 * 109.46914 * 210.00201 * 23 21 19 26 26 H 1.48508 * 109.46806 * 329.99819 * 23 21 19 27 27 C 1.36643 * 109.08752 * 359.70207 * 5 4 3 28 28 H 1.09004 * 109.46581 * 269.97857 * 1 2 3 29 29 H 1.09004 * 109.47242 * 29.96797 * 1 2 3 30 30 H 1.08990 * 109.47411 * 149.97666 * 1 2 3 31 31 H 1.08000 * 124.52831 * 0.02618 * 3 2 1 32 32 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 34 34 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 35 35 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 39 39 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 40 40 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 42 42 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 43 43 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00283 * 180.02562 * 22 21 19 45 45 H 1.08002 * 123.35553 * 180.24375 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7891 0.0058 5 6 3.5936 -0.9428 -0.0010 6 6 4.6230 -1.9864 -0.0006 7 8 4.3000 -3.1598 0.0000 8 7 5.9273 -1.6465 -0.0008 9 6 6.9561 -2.6894 0.0002 10 6 8.3411 -2.0395 0.0004 11 1 8.4200 -1.3520 -0.8418 12 6 8.5434 -1.2703 1.3074 13 6 9.4133 -3.1239 -0.1244 14 7 10.7350 -2.4941 -0.2446 15 6 11.7917 -3.5072 -0.3672 16 6 13.1300 -2.8250 -0.4888 17 8 13.1969 -1.6140 -0.4742 18 7 14.2524 -3.5606 -0.6137 19 6 15.4699 -2.9400 -0.7238 20 1 15.5295 -1.8617 -0.7108 21 6 16.6271 -3.6982 -0.8520 22 7 17.7941 -3.1035 -0.9580 23 14 16.5241 -5.5633 -0.8737 24 1 16.3580 -6.0337 -2.2724 25 1 17.7708 -6.1345 -0.3041 26 1 15.3615 -6.0043 -0.0618 27 6 2.2446 -1.1601 -0.0006 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3634 0.8903 -0.5133 30 1 -0.3634 -0.8897 -0.5141 31 1 1.8027 2.1232 0.0004 32 1 6.1847 -0.7113 -0.0008 33 1 6.8454 -3.3097 -0.8893 34 1 6.8453 -3.3081 0.8907 35 1 9.5303 -0.8076 1.3078 36 1 7.7795 -0.4978 1.3963 37 1 8.4645 -1.9579 2.1495 38 1 9.2171 -3.7286 -1.0097 39 1 9.3926 -3.7589 0.7613 40 1 10.9137 -1.8771 0.5336 41 1 11.7877 -4.1452 0.5166 42 1 11.6118 -4.1142 -1.2544 43 1 14.1988 -4.5290 -0.6250 44 1 18.6019 -3.6328 -1.0479 45 1 1.8018 -2.1452 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270402815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = -73.365579 kcal Electronic energy + Delta-G solvation = -25268.354025 eV Core-core repulsion = 21411.015740 eV Total energy + Delta-G solvation = -3857.338285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97558 -40.31199 -39.13405 -38.26200 -36.22671 -35.71762 -33.78975 -33.45850 -31.90297 -29.03111 -28.74969 -27.91459 -26.62812 -25.26597 -23.92673 -21.86021 -21.39215 -21.14542 -20.27278 -19.97018 -19.33457 -17.91336 -17.33583 -17.21179 -16.89104 -16.73242 -16.53796 -15.93651 -15.73757 -15.49530 -15.05722 -14.93905 -14.74271 -14.57335 -14.46774 -14.26920 -14.07236 -13.85928 -13.54891 -13.41974 -13.16929 -13.11401 -12.90284 -12.81423 -12.80342 -12.40767 -12.13111 -11.96845 -11.89089 -11.86521 -11.77349 -11.50969 -11.28493 -10.43297 -10.31157 -10.24370 -9.83689 -9.36177 -9.31647 -8.40970 -6.01901 -0.53298 0.46812 0.90265 1.30865 1.32155 1.36316 1.44988 1.96047 1.99648 2.09454 2.23433 2.75528 3.15533 3.42265 3.67962 3.88643 3.92588 3.97101 4.05930 4.18016 4.19157 4.37975 4.43934 4.51312 4.55627 4.57048 4.68257 4.70369 4.78755 4.84834 4.89381 4.93324 4.99886 5.05012 5.17761 5.30959 5.38453 5.39176 5.46078 5.53044 5.90864 6.05126 6.32896 6.41262 6.60229 6.88418 7.01026 7.40271 7.96671 8.76611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.001513 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.706073 B =18498.101810 C =19082.997108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.130 4.130 3 C -0.227 4.227 4 S 0.236 5.764 5 C -0.298 4.298 6 C 0.588 3.412 7 O -0.573 6.573 8 N -0.713 5.713 9 C 0.131 3.869 10 C -0.092 4.092 11 H 0.085 0.915 12 C -0.152 4.152 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.061 3.939 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.231 1.231 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.408 0.592 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.345 0.655 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.973 2.675 3.960 36.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C -0.365 4.365 4 S 0.505 5.495 5 C -0.418 4.418 6 C 0.375 3.625 7 O -0.455 6.455 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.111 4.111 11 H 0.104 0.896 12 C -0.210 4.210 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.072 4.072 16 C 0.236 3.764 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.074 0.926 21 C -0.212 4.212 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.154 1.154 27 C -0.093 4.093 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -34.606 3.674 3.284 34.955 hybrid contribution -0.339 -1.488 0.752 1.702 sum -34.945 2.186 4.037 35.245 Atomic orbital electron populations 1.20576 0.87703 1.03772 1.03209 1.18992 0.99273 0.90966 1.05028 1.25572 0.98266 1.04501 1.08174 1.82898 1.04376 0.95411 1.66812 1.24556 0.97817 0.98658 1.20773 1.17224 0.82338 0.87269 0.75657 1.90806 1.82390 1.19997 1.52290 1.45799 1.04869 1.11138 1.74649 1.21350 0.85499 0.89775 1.02619 1.21239 0.91999 0.97825 1.00005 0.89649 1.21901 1.02211 1.00500 0.96357 1.21949 0.86950 0.95522 1.01724 1.60071 1.01029 1.19659 1.51174 1.21639 0.87575 0.93972 1.03985 1.21003 0.86525 0.87712 0.81165 1.90538 1.87491 1.16351 1.55473 1.42036 1.05679 1.08399 1.67164 1.19020 0.83781 0.93390 1.49745 0.92635 1.26100 0.93651 1.05480 0.95999 1.69802 0.99029 1.38884 1.49760 0.85371 0.79793 0.76295 0.80094 1.18218 1.20047 1.15436 1.20842 0.91183 1.00609 0.96658 0.90391 0.90029 0.91112 0.78729 0.75514 0.91244 0.91159 0.92587 0.91431 0.92100 0.89800 0.93579 0.83461 0.90552 0.86775 0.77458 0.91152 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.13 71.24 0.72 0.08 16 2 C -0.13 -1.53 5.78 -21.05 -0.12 -1.65 16 3 C -0.23 -2.13 10.67 66.81 0.71 -1.41 16 4 S 0.24 2.55 22.16 -56.49 -1.25 1.30 16 5 C -0.30 -5.21 6.45 24.08 0.16 -5.06 16 6 C 0.59 12.79 7.78 86.42 0.67 13.46 16 7 O -0.57 -16.78 16.84 -4.34 -0.07 -16.85 16 8 N -0.71 -12.01 5.28 -467.18 -2.47 -14.48 16 9 C 0.13 2.22 5.06 86.38 0.44 2.65 16 10 C -0.09 -1.52 2.63 -10.79 -0.03 -1.55 16 11 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 12 C -0.15 -2.41 8.84 71.98 0.64 -1.77 16 13 C 0.07 1.30 5.14 86.31 0.44 1.74 16 14 N -0.69 -19.03 6.12 -517.92 -3.17 -22.20 16 15 C 0.06 1.80 6.17 85.56 0.53 2.33 16 16 C 0.45 20.03 7.82 87.66 0.69 20.71 16 17 O -0.61 -33.77 15.78 -3.06 -0.05 -33.82 16 18 N -0.59 -27.73 5.09 -306.99 -1.56 -29.29 16 19 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 20 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.93 -56.29 13.96 21.66 0.30 -55.98 16 23 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 27 C -0.06 -0.96 9.80 21.72 0.21 -0.75 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 0.33 8.12 -2.39 -0.02 0.32 16 30 H 0.07 0.47 8.13 -2.39 -0.02 0.45 16 31 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.41 5.22 6.77 -92.71 -0.63 4.59 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.06 6.68 -2.39 -0.02 1.05 16 36 H 0.07 0.87 7.18 -2.39 -0.02 0.85 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.35 10.22 6.68 -89.69 -0.60 9.62 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 44 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -81.28 390.04 -0.78 -82.05 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.78 Total: 38.71 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.38 Total: 10.01 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -6.90 Total: -121.96 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.12 Total: -50.67 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.25 Total: 1.30 kcal Total: -81.28 -0.78 -82.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270402815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.689 kcal (2) G-P(sol) polarization free energy of solvation -81.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds