Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 128.00904 * 2 1 4 4 O 1.34038 * 106.44699 * 179.91564 * 3 2 1 5 5 N 1.20916 * 111.56847 * 0.37697 * 4 3 2 6 6 C 1.30179 * 111.60796 * 359.76575 * 5 4 3 7 7 C 1.50698 * 126.80683 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47140 * 270.02704 * 7 6 5 9 9 C 1.46901 * 111.00192 * 175.27563 * 8 7 6 10 10 C 1.53002 * 112.84306 * 290.67947 * 9 8 7 11 11 N 1.46499 * 109.47345 * 312.16596 * 10 9 8 12 12 C 1.34776 * 120.00091 * 174.70418 * 11 10 9 13 13 O 1.21280 * 119.99969 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00122 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47071 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99754 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00444 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99899 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99906 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00164 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47314 * 89.99430 * 20 18 16 22 22 H 1.48504 * 109.46949 * 209.99958 * 20 18 16 23 23 H 1.48502 * 109.46611 * 329.99592 * 20 18 16 24 24 C 1.53774 * 113.61769 * 159.37506 * 9 8 7 25 25 C 1.53780 * 87.08247 * 220.01591 * 24 9 8 26 26 C 1.53775 * 113.61389 * 61.87104 * 9 8 7 27 27 H 1.09002 * 109.47124 * 269.67717 * 1 2 3 28 28 H 1.09002 * 109.46951 * 149.68248 * 1 2 3 29 29 H 1.08997 * 109.47237 * 29.67422 * 1 2 3 30 30 H 1.08001 * 126.77035 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46910 * 30.02136 * 7 6 5 32 32 H 1.08997 * 109.47061 * 150.02162 * 7 6 5 33 33 H 1.00909 * 110.99793 * 299.22063 * 8 7 6 34 34 H 1.09003 * 109.47113 * 72.17011 * 10 9 8 35 35 H 1.09001 * 109.46619 * 192.16928 * 10 9 8 36 36 H 0.96996 * 119.99954 * 354.71656 * 11 10 9 37 37 H 1.08998 * 109.47020 * 300.00487 * 14 12 11 38 38 H 1.08999 * 109.47047 * 60.00249 * 14 12 11 39 39 H 0.97002 * 119.99475 * 180.02562 * 19 18 16 40 40 H 1.09003 * 113.61302 * 334.56387 * 24 9 8 41 41 H 1.09004 * 113.61805 * 105.46440 * 24 9 8 42 42 H 1.09000 * 113.61678 * 270.88290 * 25 24 9 43 43 H 1.09003 * 113.69169 * 139.98880 * 25 24 9 44 44 H 1.09001 * 113.61566 * 254.53181 * 26 9 8 45 45 H 1.08998 * 113.61588 * 25.44257 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 0.0019 5 7 3.5878 -0.6345 -0.0044 6 6 2.3776 -1.1141 -0.0063 7 6 1.9827 -2.5684 -0.0142 8 7 1.8541 -3.0333 -1.4017 9 6 1.5794 -4.4756 -1.4504 10 6 2.7749 -5.3230 -1.0104 11 7 3.9837 -4.8531 -1.6916 12 6 5.1828 -5.3829 -1.3786 13 8 5.2610 -6.2491 -0.5333 14 6 6.4264 -4.8991 -2.0789 15 16 7.8642 -5.7969 -1.4442 16 6 9.1388 -5.0529 -2.4068 17 1 8.8944 -4.2839 -3.1246 18 6 10.4571 -5.4544 -2.2418 19 7 11.4093 -4.8982 -2.9606 20 14 10.8801 -6.7841 -0.9998 21 1 10.8179 -8.1139 -1.6577 22 1 12.2506 -6.5543 -0.4761 23 1 9.9079 -6.7408 0.1220 24 6 0.9478 -4.9381 -2.7739 25 6 0.0511 -5.8615 -1.9324 26 6 0.2585 -4.8743 -0.7715 27 1 -0.3633 -0.0058 1.0277 28 1 -0.3633 -0.8871 -0.5188 29 1 -0.3633 0.8929 -0.5087 30 1 2.0575 2.1093 0.0004 31 1 2.7465 -3.1550 0.4962 32 1 1.0288 -2.6886 0.4993 33 1 1.1425 -2.5130 -1.8929 34 1 2.9070 -5.2329 0.0678 35 1 2.5949 -6.3667 -1.2685 36 1 3.9212 -4.1605 -2.3678 37 1 6.3320 -5.0757 -3.1503 38 1 6.5543 -3.8321 -1.8964 39 1 12.3306 -5.1791 -2.8455 40 1 0.3995 -4.1526 -3.2941 41 1 1.6392 -5.4746 -3.4238 42 1 0.4846 -6.8451 -1.7518 43 1 -0.9793 -5.9112 -2.2844 44 1 0.3934 -5.3594 0.1953 45 1 -0.4782 -4.0715 -0.7442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273048466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 17.113639 kcal Electronic energy + Delta-G solvation = -26939.387599 eV Core-core repulsion = 23085.972787 eV Total energy + Delta-G solvation = -3853.414812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88640 -41.34903 -40.08162 -36.75445 -35.38094 -34.69197 -34.34672 -32.86410 -31.40847 -29.00402 -28.26550 -27.84539 -27.32495 -26.40385 -23.51851 -22.52923 -22.07057 -21.72684 -20.22485 -19.56195 -18.57356 -18.41556 -17.82976 -17.62561 -17.15836 -17.01141 -16.49973 -16.21232 -15.69454 -15.64560 -15.26748 -15.03693 -14.93409 -14.65174 -14.44726 -14.07090 -14.01252 -13.78219 -13.55620 -13.37878 -13.25671 -13.18287 -13.01879 -12.93186 -12.67095 -12.57306 -12.15772 -11.89006 -11.81739 -11.57003 -11.32704 -11.18834 -11.03512 -10.89329 -10.57659 -10.22849 -10.09480 -9.44645 -9.01985 -8.53395 -6.24563 0.65152 0.96291 1.22988 1.29479 1.44934 1.53838 1.55849 2.21016 2.25531 2.49505 2.69168 2.84435 3.03763 3.30103 3.47760 3.54579 3.60310 3.73185 3.90589 3.93052 4.05071 4.17708 4.18914 4.35721 4.42550 4.45947 4.53701 4.59147 4.68457 4.77677 4.81707 4.83817 4.85858 4.93974 5.01444 5.07806 5.10007 5.13353 5.35400 5.38142 5.45739 5.68955 5.87504 6.09130 6.38582 6.49470 6.91234 7.18962 7.42430 8.59474 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.002919 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.130448 B = 9588.991289 C =11493.773253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.204 4.204 3 C -0.062 4.062 4 O 0.083 5.917 5 N -0.394 5.394 6 C 0.007 3.993 7 C 0.146 3.854 8 N -0.672 5.672 9 C 0.086 3.914 10 C 0.150 3.850 11 N -0.696 5.696 12 C 0.533 3.467 13 O -0.566 6.566 14 C -0.109 4.109 15 S -0.170 6.170 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.045 3.955 19 N -0.917 5.917 20 Si 0.917 3.083 21 H -0.259 1.259 22 H -0.257 1.257 23 H -0.238 1.238 24 C -0.124 4.124 25 C -0.136 4.136 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.255 0.745 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.359 0.641 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.278 0.722 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.201 10.206 3.811 35.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.208 4.208 3 C -0.143 4.143 4 O 0.018 5.982 5 N -0.099 5.099 6 C -0.152 4.152 7 C 0.017 3.983 8 N -0.305 5.305 9 C -0.006 4.006 10 C 0.026 3.974 11 N -0.349 5.349 12 C 0.319 3.681 13 O -0.445 6.445 14 C -0.260 4.260 15 S 0.056 5.944 16 C -0.678 4.678 17 H 0.077 0.923 18 C -0.160 4.160 19 N -0.555 5.555 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.181 1.181 23 H -0.162 1.162 24 C -0.162 4.162 25 C -0.174 4.174 26 C -0.195 4.195 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.180 0.820 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -31.999 8.194 5.058 33.417 hybrid contribution -0.567 1.181 -0.731 1.501 sum -32.567 9.375 4.327 34.164 Atomic orbital electron populations 1.20182 0.84896 1.04376 1.03460 1.21730 1.00066 0.90585 1.08413 1.26639 0.81999 1.02963 1.02660 1.84828 1.30967 1.15188 1.67242 1.73978 1.24280 0.92055 1.19553 1.23716 0.88620 0.99060 1.03781 1.19970 1.00802 0.86469 0.91031 1.59978 1.54024 1.03071 1.13458 1.22467 0.92082 0.86774 0.99246 1.21113 0.82536 0.97453 0.96288 1.45514 1.04914 1.41740 1.42741 1.19896 0.84816 0.81369 0.82052 1.90667 1.86785 1.32809 1.34266 1.23225 0.94461 1.04107 1.04231 1.84592 0.99977 1.54379 1.55404 1.22459 0.94125 1.25853 1.25381 0.92303 1.25594 0.94986 0.98191 0.97262 1.70024 1.01425 1.43186 1.40904 0.85840 0.79777 0.79730 0.80851 1.18365 1.18095 1.16249 1.23141 0.98405 0.99824 0.94858 1.22747 1.00978 0.97536 0.96099 1.23591 0.96413 1.00605 0.98864 0.90175 0.90500 0.89098 0.72926 0.92180 0.90236 0.81983 0.93004 0.90993 0.74721 0.87078 0.88033 0.91286 0.87743 0.91581 0.90524 0.89411 0.91308 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.37 71.24 0.74 0.37 16 2 C -0.20 -2.70 6.32 -19.73 -0.12 -2.82 16 3 C -0.06 -0.80 12.26 67.17 0.82 0.02 16 4 O 0.08 1.91 11.20 71.66 0.80 2.72 16 5 N -0.39 -10.89 12.07 -49.55 -0.60 -11.49 16 6 C 0.01 0.15 6.88 43.58 0.30 0.45 16 7 C 0.15 2.55 5.80 85.56 0.50 3.04 16 8 N -0.67 -9.82 5.76 -471.57 -2.72 -12.53 16 9 C 0.09 1.19 0.80 4.05 0.00 1.20 16 10 C 0.15 3.41 4.62 86.38 0.40 3.81 16 11 N -0.70 -19.45 5.38 -463.05 -2.49 -21.94 16 12 C 0.53 20.52 7.85 87.66 0.69 21.21 16 13 O -0.57 -25.97 15.86 -3.03 -0.05 -26.02 16 14 C -0.11 -4.64 6.16 71.24 0.44 -4.20 16 15 S -0.17 -9.17 18.55 -56.49 -1.05 -10.22 16 16 C -0.53 -32.58 10.04 67.95 0.68 -31.89 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 18 C 0.04 2.75 5.50 84.86 0.47 3.21 16 19 N -0.92 -57.82 13.97 21.65 0.30 -57.52 16 20 Si 0.92 46.74 27.74 68.60 1.90 48.65 16 21 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.24 -12.23 6.74 99.48 0.67 -11.56 16 24 C -0.12 -1.35 7.33 31.12 0.23 -1.12 16 25 C -0.14 -1.28 7.73 31.12 0.24 -1.04 16 26 C -0.15 -1.45 6.44 31.12 0.20 -1.25 16 27 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.25 0.67 8.06 -2.91 -0.02 0.64 16 31 H 0.06 1.44 6.97 -2.39 -0.02 1.43 16 32 H 0.08 0.95 7.54 -2.39 -0.02 0.93 16 33 H 0.36 3.70 8.51 -89.69 -0.76 2.94 16 34 H 0.05 1.36 7.40 -2.39 -0.02 1.34 16 35 H 0.07 1.66 7.35 -2.39 -0.02 1.64 16 36 H 0.42 10.30 8.09 -92.71 -0.75 9.55 16 37 H 0.11 4.34 8.14 -2.40 -0.02 4.32 16 38 H 0.10 4.22 8.14 -2.40 -0.02 4.20 16 39 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 40 H 0.10 0.78 7.95 -2.39 -0.02 0.76 16 41 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 42 H 0.08 0.89 7.67 -2.39 -0.02 0.87 16 43 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.75 8.10 -2.39 -0.02 0.74 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -82.46 388.67 1.16 -81.29 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.53 Total: 16.07 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.58 Total: -9.01 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -5.50 Total: -103.48 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.75 Total: -23.30 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.65 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -82.46 1.16 -81.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273048466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.408 kcal (2) G-P(sol) polarization free energy of solvation -82.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds