Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30171 * 126.80412 * 2 1 4 4 O 1.20918 * 111.60679 * 180.25072 * 3 2 1 5 5 C 1.34048 * 111.56301 * 359.74906 * 4 3 2 6 6 C 1.50703 * 126.77135 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44659 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00243 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.46651 * 90.00344 * 8 7 5 10 10 C 1.46906 * 110.99427 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46770 * 179.97438 * 10 9 8 12 12 C 1.31001 * 119.99623 * 127.00789 * 11 10 9 13 13 C 1.50694 * 120.00314 * 7.55416 * 12 11 10 14 14 N 1.46504 * 109.47076 * 127.15743 * 13 12 11 15 15 C 1.34771 * 120.00178 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00368 * 359.72067 * 15 14 13 17 17 C 1.50703 * 119.99856 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47067 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00114 * 179.97438 * 18 17 15 20 20 H 1.08009 * 120.00186 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00335 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99708 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46968 * 90.00186 * 23 21 19 25 25 H 1.48491 * 109.47139 * 209.99951 * 23 21 19 26 26 H 1.48501 * 109.47279 * 330.00687 * 23 21 19 27 27 H 1.08993 * 109.47326 * 270.16525 * 1 2 3 28 28 H 1.09002 * 109.47073 * 30.16874 * 1 2 3 29 29 H 1.09006 * 109.47114 * 150.16004 * 1 2 3 30 30 H 1.09009 * 109.46970 * 269.99667 * 6 5 4 31 31 H 1.08998 * 109.47773 * 30.00082 * 6 5 4 32 32 H 1.09008 * 109.46768 * 150.00317 * 6 5 4 33 33 H 1.08999 * 109.47702 * 330.00279 * 8 7 5 34 34 H 1.08999 * 109.46656 * 209.99659 * 8 7 5 35 35 H 1.00893 * 111.00256 * 56.04711 * 9 8 7 36 36 H 1.08998 * 109.47445 * 59.99891 * 10 9 8 37 37 H 1.08996 * 109.47108 * 299.99407 * 10 9 8 38 38 H 1.07998 * 119.99771 * 307.01093 * 11 10 9 39 39 H 1.08005 * 119.99381 * 187.55793 * 12 11 10 40 40 H 1.08999 * 109.47293 * 7.16422 * 13 12 11 41 41 H 1.08992 * 109.47829 * 247.15667 * 13 12 11 42 42 H 0.97003 * 119.99842 * 359.97438 * 14 13 12 43 43 H 1.09003 * 109.47164 * 299.99394 * 17 15 14 44 44 H 1.08991 * 109.47638 * 59.99585 * 17 15 14 45 45 H 0.96996 * 120.00013 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3696 -0.0088 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0076 9 7 1.8380 -3.0572 1.3940 10 6 1.4528 -4.4742 1.4369 11 6 1.3393 -4.9205 2.8719 12 6 0.2440 -5.5039 3.2916 13 6 -0.8327 -5.8826 2.3076 14 7 -1.1709 -7.2982 2.4746 15 6 -2.1153 -7.8618 1.6957 16 8 -2.6889 -7.1959 0.8599 17 6 -2.4636 -9.3179 1.8678 18 16 -3.7567 -9.7728 0.6859 19 6 -3.9618 -11.4740 1.0964 20 1 -3.3656 -11.9158 1.8812 21 6 -4.8903 -12.2461 0.4120 22 7 -5.6173 -11.7075 -0.5440 23 14 -5.1073 -14.0498 0.8468 24 1 -6.1438 -14.1834 1.9018 25 1 -5.5305 -14.8026 -0.3611 26 1 -3.8200 -14.5971 1.3455 27 1 -0.3633 0.0030 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3634 -0.8915 -0.5114 30 1 5.2102 -1.5553 -1.0379 31 1 5.6686 -0.7852 0.5001 32 1 4.7676 -2.3203 0.5073 33 1 2.7199 -3.1710 -0.5094 34 1 1.0022 -2.7044 -0.5010 35 1 1.1850 -2.4894 1.9129 36 1 2.2099 -5.0721 0.9296 37 1 0.4924 -4.6049 0.9384 38 1 2.1609 -4.7594 3.5541 39 1 0.1127 -5.7134 4.3430 40 1 -0.4736 -5.7121 1.2927 41 1 -1.7189 -5.2738 2.4865 42 1 -0.7145 -7.8301 3.1453 43 1 -1.5774 -9.9270 1.6896 44 1 -2.8232 -9.4880 2.8826 45 1 -6.2664 -12.2469 -1.0220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273861304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = 38.181540 kcal Electronic energy + Delta-G solvation = -25119.595521 eV Core-core repulsion = 21267.094282 eV Total energy + Delta-G solvation = -3852.501239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.25577 -39.30040 -37.83405 -36.11023 -34.61624 -33.86448 -32.68912 -32.44465 -29.69712 -29.09164 -28.64752 -27.08217 -25.71118 -25.27502 -24.12625 -21.84672 -20.56779 -20.44898 -19.12666 -18.01233 -17.78202 -17.26772 -17.03244 -16.29053 -15.71930 -15.59401 -15.06236 -14.92423 -14.82061 -14.55375 -14.16592 -13.92466 -13.86608 -13.74378 -13.50820 -13.30413 -13.18318 -13.05545 -12.92249 -12.63926 -12.50837 -12.48454 -12.18117 -11.82984 -11.27797 -11.14471 -11.07898 -11.04142 -10.77984 -10.25045 -9.84548 -9.78306 -9.56033 -9.33594 -9.08902 -9.00621 -8.72237 -8.26030 -6.52244 -6.23529 -3.94256 1.09683 1.62545 1.85031 2.75428 3.05504 3.07785 3.21018 3.27350 3.32959 3.75829 3.79944 3.93815 4.08487 4.18701 4.37160 4.49982 4.53535 4.69854 4.85384 4.88606 4.99091 5.01508 5.06064 5.11678 5.13356 5.15093 5.24572 5.28207 5.32753 5.38944 5.44440 5.53189 5.57125 5.59909 5.76528 5.78919 5.86676 6.11620 6.19616 6.27836 6.49578 6.59153 6.89634 7.57792 7.67690 7.94744 8.33385 8.57060 9.21843 10.83910 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001527 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.335255 B =18335.063245 C =18731.686971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.369 5.369 4 O 0.094 5.906 5 C -0.010 4.010 6 C -0.075 4.075 7 C -0.203 4.203 8 C 0.136 3.864 9 N -0.680 5.680 10 C 0.070 3.930 11 C -0.134 4.134 12 C -0.166 4.166 13 C 0.138 3.862 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.344 0.656 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.867 20.149 5.494 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.074 4.074 6 C -0.133 4.133 7 C -0.207 4.207 8 C 0.007 3.993 9 N -0.311 5.311 10 C -0.058 4.058 11 C -0.153 4.153 12 C -0.186 4.186 13 C 0.015 3.985 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.162 0.838 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.225 22.431 3.989 30.464 hybrid contribution -0.280 -2.842 1.444 3.200 sum 19.945 19.589 5.432 28.478 Atomic orbital electron populations 1.20204 0.85945 1.03970 1.03554 1.23491 0.98922 0.88577 1.02383 1.73856 0.89258 1.23918 1.20482 1.84809 1.21677 1.22652 1.67853 1.24309 0.98339 0.83591 1.01184 1.20389 0.89819 0.99078 1.03983 1.20777 0.91747 0.96938 1.11255 1.20099 1.00845 0.88146 0.90191 1.60493 1.55164 1.03005 1.12461 1.21256 1.00538 0.88946 0.95034 1.22755 0.97052 0.98749 0.96778 1.22972 0.94914 1.00984 0.99704 1.20444 0.96787 0.82809 0.98454 1.45969 1.41864 1.10774 1.40326 1.20335 0.78319 0.89309 0.80272 1.90697 1.50782 1.63833 1.34019 1.23532 1.05991 0.94157 1.06715 1.85390 1.43048 1.11141 1.43823 1.22872 1.26375 0.95183 1.23997 0.90906 1.24996 0.94776 0.99300 0.94508 1.70016 1.22307 1.36628 1.21330 0.86162 0.78587 0.82644 0.78075 1.20263 1.20740 1.19693 0.90016 0.90379 0.89993 0.89507 0.89867 0.88352 0.89472 0.93356 0.83797 0.89842 0.92990 0.86145 0.86240 0.90520 0.91100 0.76698 0.89182 0.89172 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.17 16 2 C 0.03 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.07 12.07 33.42 0.40 -3.66 16 4 O 0.09 0.93 11.20 17.16 0.19 1.12 16 5 C -0.01 -0.08 7.49 -35.30 -0.26 -0.34 16 6 C -0.08 -0.31 10.25 36.01 0.37 0.06 16 7 C -0.20 -1.63 5.83 -104.42 -0.61 -2.24 16 8 C 0.14 0.92 5.93 -4.97 -0.03 0.89 16 9 N -0.68 -4.61 6.48 -116.33 -0.75 -5.37 16 10 C 0.07 0.50 5.77 -4.97 -0.03 0.47 16 11 C -0.13 -0.93 9.77 -36.02 -0.35 -1.28 16 12 C -0.17 -1.28 9.63 -36.03 -0.35 -1.63 16 13 C 0.14 1.51 5.76 -5.19 -0.03 1.48 16 14 N -0.73 -9.39 5.55 -61.48 -0.34 -9.73 16 15 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 16 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 23 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.49 7.65 -51.93 -0.40 0.09 16 30 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.37 8.06 -51.92 -0.42 -0.05 16 33 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 35 H 0.34 2.38 8.71 -39.30 -0.34 2.03 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.42 5.30 -51.93 -0.28 0.15 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.08 0.88 5.30 -51.93 -0.28 0.61 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.40 3.95 8.46 -40.82 -0.35 3.60 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -35.42 399.54 -8.72 -44.14 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.64 Total: 1.08 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.19 Total: -9.23 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.04 Total: -44.02 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.28 Total: -10.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.42 -8.72 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273861304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.325 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds