Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30171 * 126.80412 * 2 1 4 4 O 1.20918 * 111.60679 * 180.25072 * 3 2 1 5 5 C 1.34048 * 111.56301 * 359.74906 * 4 3 2 6 6 C 1.50703 * 126.77135 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44659 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00243 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.46651 * 90.00344 * 8 7 5 10 10 C 1.46906 * 110.99427 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46770 * 179.97438 * 10 9 8 12 12 C 1.31001 * 119.99623 * 127.00789 * 11 10 9 13 13 C 1.50694 * 120.00314 * 7.55416 * 12 11 10 14 14 N 1.46504 * 109.47076 * 127.15743 * 13 12 11 15 15 C 1.34771 * 120.00178 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00368 * 359.72067 * 15 14 13 17 17 C 1.50703 * 119.99856 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47067 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00114 * 179.97438 * 18 17 15 20 20 H 1.08009 * 120.00186 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00335 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99708 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46968 * 90.00186 * 23 21 19 25 25 H 1.48491 * 109.47139 * 209.99951 * 23 21 19 26 26 H 1.48501 * 109.47279 * 330.00687 * 23 21 19 27 27 H 1.08993 * 109.47326 * 270.16525 * 1 2 3 28 28 H 1.09002 * 109.47073 * 30.16874 * 1 2 3 29 29 H 1.09006 * 109.47114 * 150.16004 * 1 2 3 30 30 H 1.09009 * 109.46970 * 269.99667 * 6 5 4 31 31 H 1.08998 * 109.47773 * 30.00082 * 6 5 4 32 32 H 1.09008 * 109.46768 * 150.00317 * 6 5 4 33 33 H 1.08999 * 109.47702 * 330.00279 * 8 7 5 34 34 H 1.08999 * 109.46656 * 209.99659 * 8 7 5 35 35 H 1.00893 * 111.00256 * 56.04711 * 9 8 7 36 36 H 1.08998 * 109.47445 * 59.99891 * 10 9 8 37 37 H 1.08996 * 109.47108 * 299.99407 * 10 9 8 38 38 H 1.07998 * 119.99771 * 307.01093 * 11 10 9 39 39 H 1.08005 * 119.99381 * 187.55793 * 12 11 10 40 40 H 1.08999 * 109.47293 * 7.16422 * 13 12 11 41 41 H 1.08992 * 109.47829 * 247.15667 * 13 12 11 42 42 H 0.97003 * 119.99842 * 359.97438 * 14 13 12 43 43 H 1.09003 * 109.47164 * 299.99394 * 17 15 14 44 44 H 1.08991 * 109.47638 * 59.99585 * 17 15 14 45 45 H 0.96996 * 120.00013 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3696 -0.0088 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0076 9 7 1.8380 -3.0572 1.3940 10 6 1.4528 -4.4742 1.4369 11 6 1.3393 -4.9205 2.8719 12 6 0.2440 -5.5039 3.2916 13 6 -0.8327 -5.8826 2.3076 14 7 -1.1709 -7.2982 2.4746 15 6 -2.1153 -7.8618 1.6957 16 8 -2.6889 -7.1959 0.8599 17 6 -2.4636 -9.3179 1.8678 18 16 -3.7567 -9.7728 0.6859 19 6 -3.9618 -11.4740 1.0964 20 1 -3.3656 -11.9158 1.8812 21 6 -4.8903 -12.2461 0.4120 22 7 -5.6173 -11.7075 -0.5440 23 14 -5.1073 -14.0498 0.8468 24 1 -6.1438 -14.1834 1.9018 25 1 -5.5305 -14.8026 -0.3611 26 1 -3.8200 -14.5971 1.3455 27 1 -0.3633 0.0030 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3634 -0.8915 -0.5114 30 1 5.2102 -1.5553 -1.0379 31 1 5.6686 -0.7852 0.5001 32 1 4.7676 -2.3203 0.5073 33 1 2.7199 -3.1710 -0.5094 34 1 1.0022 -2.7044 -0.5010 35 1 1.1850 -2.4894 1.9129 36 1 2.2099 -5.0721 0.9296 37 1 0.4924 -4.6049 0.9384 38 1 2.1609 -4.7594 3.5541 39 1 0.1127 -5.7134 4.3430 40 1 -0.4736 -5.7121 1.2927 41 1 -1.7189 -5.2738 2.4865 42 1 -0.7145 -7.8301 3.1453 43 1 -1.5774 -9.9270 1.6896 44 1 -2.8232 -9.4880 2.8826 45 1 -6.2664 -12.2469 -1.0220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273861304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = 12.800143 kcal Electronic energy + Delta-G solvation = -25120.696141 eV Core-core repulsion = 21267.094282 eV Total energy + Delta-G solvation = -3853.601859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.92813 -40.64162 -38.50983 -36.90045 -35.44460 -34.58865 -34.54605 -33.49436 -31.05305 -29.71586 -29.24218 -27.85150 -27.56936 -26.32195 -24.73463 -22.48013 -21.81129 -21.14475 -20.16256 -19.43039 -18.70307 -17.98888 -17.85808 -17.62065 -16.87859 -16.81206 -16.51064 -16.02560 -15.71531 -15.62462 -15.17870 -14.90477 -14.57208 -14.47392 -14.37577 -14.29138 -14.07966 -13.86725 -13.73623 -13.50536 -13.32768 -13.16527 -13.15990 -12.95186 -12.88171 -12.74156 -12.59783 -11.89460 -11.81841 -11.70621 -11.13797 -11.05685 -10.90264 -10.38356 -10.27009 -10.14457 -9.92806 -9.39507 -8.66222 -8.34264 -6.12287 0.48576 0.96438 1.18795 1.31871 1.43120 1.49970 1.60257 1.61653 2.20691 2.27710 2.45554 3.00007 3.18700 3.33167 3.37073 3.53267 3.77232 3.87397 3.98387 4.03051 4.09824 4.21673 4.31572 4.36784 4.50544 4.52176 4.54212 4.59826 4.61832 4.72490 4.73196 4.76572 4.77520 4.84682 4.95779 5.03565 5.14459 5.29037 5.38587 5.42546 5.61276 5.72803 5.94203 6.20329 6.33446 6.52536 7.07176 7.24778 7.29989 8.74914 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001527 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.335255 B =18335.063245 C =18731.686971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 N -0.403 5.403 4 O 0.078 5.922 5 C -0.007 4.007 6 C -0.074 4.074 7 C -0.213 4.213 8 C 0.141 3.859 9 N -0.676 5.676 10 C 0.070 3.930 11 C -0.118 4.118 12 C -0.168 4.168 13 C 0.137 3.863 14 N -0.708 5.708 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.343 0.657 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.970 18.857 7.381 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 N -0.113 5.113 4 O 0.017 5.983 5 C -0.071 4.071 6 C -0.131 4.131 7 C -0.218 4.218 8 C 0.012 3.988 9 N -0.307 5.307 10 C -0.058 4.058 11 C -0.137 4.137 12 C -0.188 4.188 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.394 21.147 5.924 31.365 hybrid contribution -0.811 -2.325 0.889 2.618 sum 21.583 18.823 6.813 29.437 Atomic orbital electron populations 1.20280 0.84807 1.04331 1.04234 1.23936 0.99906 0.88812 1.01612 1.73843 0.89895 1.25108 1.22406 1.84763 1.21361 1.23857 1.68274 1.24986 0.99704 0.82907 0.99542 1.20568 0.88311 0.98911 1.05268 1.20951 0.91754 0.97237 1.11819 1.20098 1.01021 0.87499 0.90226 1.60513 1.54945 1.02787 1.12443 1.21246 1.00041 0.89213 0.95312 1.22874 0.96922 0.97258 0.96652 1.22818 0.93987 1.02274 0.99696 1.20542 0.97509 0.81069 0.99445 1.45726 1.39738 1.11806 1.38937 1.20077 0.79068 0.88529 0.80472 1.90687 1.52965 1.64564 1.36396 1.23377 1.03904 0.95720 1.05100 1.85570 1.47098 1.12148 1.47709 1.23217 1.26686 0.95304 1.24251 0.89845 1.26129 0.94205 1.04663 0.94156 1.70183 1.23170 1.38714 1.22710 0.84951 0.79151 0.75920 0.77943 1.19344 1.20351 1.18142 0.89118 0.90477 0.89143 0.87898 0.88692 0.87593 0.88366 0.93697 0.83898 0.89317 0.94289 0.84518 0.84428 0.91061 0.92248 0.74570 0.87122 0.87153 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.39 71.24 0.74 -0.35 16 2 C 0.02 0.30 7.33 43.58 0.32 0.62 16 3 N -0.40 -9.09 12.07 -49.57 -0.60 -9.69 16 4 O 0.08 1.56 11.20 71.56 0.80 2.36 16 5 C -0.01 -0.10 7.49 25.04 0.19 0.09 16 6 C -0.07 -0.45 10.25 71.24 0.73 0.28 16 7 C -0.21 -3.28 5.83 -19.74 -0.12 -3.40 16 8 C 0.14 1.71 5.93 85.56 0.51 2.22 16 9 N -0.68 -7.98 6.48 -521.95 -3.38 -11.36 16 10 C 0.07 0.85 5.77 85.56 0.49 1.34 16 11 C -0.12 -1.28 9.77 25.65 0.25 -1.03 16 12 C -0.17 -2.12 9.63 25.64 0.25 -1.87 16 13 C 0.14 2.78 5.76 85.63 0.49 3.27 16 14 N -0.71 -16.69 5.55 -466.81 -2.59 -19.28 16 15 C 0.53 19.01 7.85 87.66 0.69 19.70 16 16 O -0.57 -25.74 15.86 -3.02 -0.05 -25.79 16 17 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 19 C -0.55 -30.90 9.50 67.96 0.65 -30.26 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.64 13.22 21.65 0.29 -55.35 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.06 7.65 -2.38 -0.02 1.04 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.11 0.53 8.06 -2.38 -0.02 0.51 16 33 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.04 0.58 7.65 -2.39 -0.02 0.57 16 35 H 0.34 4.24 8.71 -89.70 -0.78 3.45 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.59 5.30 -2.39 -0.01 0.58 16 38 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.07 1.58 5.30 -2.39 -0.01 1.56 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.42 6.92 8.46 -92.71 -0.78 6.14 16 43 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.44 399.54 0.89 -78.56 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.54 Total: 17.70 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 6.09 Total: -12.74 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -6.28 Total: -95.69 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.75 Total: -23.43 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -79.44 0.89 -78.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273861304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.357 kcal (2) G-P(sol) polarization free energy of solvation -79.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds