Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37474 * 123.35055 * 2 1 4 4 C 1.33815 * 115.09720 * 179.76517 * 3 2 1 5 5 S 1.70620 * 110.95691 * 0.48740 * 4 3 2 6 6 C 1.36652 * 123.34904 * 180.29176 * 2 1 3 7 7 C 1.46576 * 125.45795 * 359.96909 * 6 2 1 8 8 O 1.21705 * 120.00058 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99769 * 179.97438 * 7 6 2 10 10 C 1.46505 * 119.99844 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46861 * 34.60740 * 10 9 7 12 12 C 1.52995 * 109.47180 * 274.60515 * 10 9 7 13 13 C 1.53000 * 109.47121 * 154.60583 * 10 9 7 14 14 N 1.46906 * 109.47029 * 305.18688 * 13 10 9 15 15 C 1.46904 * 110.99969 * 163.93476 * 14 13 10 16 16 C 1.46899 * 110.99818 * 287.88870 * 14 13 10 17 17 C 1.50704 * 109.46900 * 170.00143 * 16 14 13 18 18 O 1.21287 * 119.99936 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99830 * 179.97438 * 17 16 14 20 20 C 1.37102 * 119.99887 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99548 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00461 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99638 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47059 * 90.00306 * 24 22 20 26 26 H 1.48502 * 109.46955 * 210.00013 * 24 22 20 27 27 H 1.48502 * 109.46908 * 330.00066 * 24 22 20 28 28 H 1.08998 * 109.46972 * 269.70813 * 1 2 3 29 29 H 1.08994 * 109.47127 * 149.70272 * 1 2 3 30 30 H 1.09001 * 109.46869 * 29.70633 * 1 2 3 31 31 H 1.08001 * 122.44777 * 359.97438 * 3 2 1 32 32 H 1.08003 * 124.52017 * 180.19207 * 4 3 2 33 33 H 0.96993 * 120.00257 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47407 * 299.99890 * 12 10 9 35 35 H 1.08996 * 109.47205 * 60.00212 * 12 10 9 36 36 H 1.09005 * 109.47116 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.46928 * 65.18017 * 13 10 9 38 38 H 1.08994 * 109.47383 * 185.18781 * 13 10 9 39 39 H 1.08995 * 109.46957 * 54.89330 * 15 14 13 40 40 H 1.08998 * 109.46750 * 174.89427 * 15 14 13 41 41 H 1.09000 * 109.46776 * 294.89276 * 15 14 13 42 42 H 1.08996 * 109.47104 * 289.99880 * 16 14 13 43 43 H 1.08999 * 109.47355 * 50.00084 * 16 14 13 44 44 H 0.96998 * 119.99958 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00192 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1484 0.0000 4 6 3.5871 0.9563 0.0050 5 16 3.9624 -0.7081 -0.0036 6 6 2.2583 -1.1415 -0.0058 7 6 1.7284 -2.5081 -0.0121 8 8 0.5257 -2.6944 -0.0120 9 7 2.5731 -3.5583 -0.0181 10 6 2.0435 -4.9243 -0.0238 11 1 1.1228 -4.9545 -0.6065 12 6 1.7529 -5.3646 1.4123 13 6 3.0734 -5.8679 -0.6481 14 7 3.4451 -5.3745 -1.9809 15 6 4.6818 -6.0120 -2.4523 16 6 2.3508 -5.5745 -2.9404 17 6 2.6654 -4.8440 -4.2204 18 8 3.6995 -4.2188 -4.3235 19 7 1.7979 -4.8864 -5.2511 20 6 2.0838 -4.2214 -6.4155 21 1 3.0043 -3.6640 -6.5069 22 6 1.1893 -4.2647 -7.4778 23 7 0.0691 -4.9425 -7.3663 24 14 1.5792 -3.3593 -9.0645 25 1 2.3242 -4.2614 -9.9789 26 1 0.3141 -2.9312 -9.7138 27 1 2.4090 -2.1654 -8.7621 28 1 -0.3633 -0.0052 1.0276 29 1 -0.3633 -0.8873 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 1.8201 2.1334 -0.0004 32 1 4.3206 1.7491 0.0087 33 1 3.5316 -3.4098 -0.0185 34 1 2.6736 -5.3344 1.9950 35 1 1.0192 -4.6924 1.8570 36 1 1.3584 -6.3808 1.4080 37 1 3.9599 -5.9080 -0.0153 38 1 2.6448 -6.8661 -0.7368 39 1 4.5667 -7.0954 -2.4209 40 1 4.8851 -5.6977 -3.4760 41 1 5.5109 -5.7158 -1.8098 42 1 2.2392 -6.6388 -3.1474 43 1 1.4231 -5.1869 -2.5194 44 1 0.9711 -5.3867 -5.1688 45 1 -0.5552 -4.9731 -8.1081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322104396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -58.384087 kcal Electronic energy + Delta-G solvation = -27611.895544 eV Core-core repulsion = 23755.206905 eV Total energy + Delta-G solvation = -3856.688639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.06587 -40.32878 -39.00749 -38.06100 -36.12329 -35.53713 -33.27740 -32.51474 -31.65904 -29.60231 -28.88407 -27.96897 -26.60734 -24.69571 -23.83817 -22.81450 -21.71752 -20.86480 -19.92678 -19.82357 -19.10814 -17.91645 -17.19112 -16.89424 -16.68010 -16.58650 -16.17900 -15.99849 -15.75747 -15.36915 -15.18875 -15.08317 -14.75483 -14.44013 -14.23120 -13.99364 -13.69798 -13.44699 -13.42111 -13.27817 -13.07337 -13.02879 -12.92427 -12.79137 -12.69908 -12.66581 -12.46295 -12.36658 -12.13995 -11.83865 -11.70171 -11.44000 -10.90908 -10.26859 -10.14148 -9.99808 -9.68250 -9.35219 -9.20192 -8.46453 -5.95209 -0.44058 0.55901 0.96981 1.36644 1.39608 1.43420 1.52826 2.05354 2.12403 2.27301 2.30173 2.79235 3.20264 3.36958 3.77157 3.91316 3.99254 4.13329 4.17702 4.27701 4.32834 4.38864 4.43264 4.51180 4.57555 4.65321 4.65999 4.71766 4.76453 4.78590 4.83042 4.99955 5.04728 5.08785 5.22267 5.29513 5.40015 5.40197 5.48413 5.58990 5.87436 6.06775 6.21311 6.53854 6.60045 7.12748 7.21745 7.56168 8.11617 8.71304 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.003712 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.764971 B = 7541.548628 C = 8978.657353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.037 4.037 3 C -0.161 4.161 4 C -0.220 4.220 5 S 0.223 5.777 6 C -0.309 4.309 7 C 0.585 3.415 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.143 3.857 11 H 0.061 0.939 12 C -0.150 4.150 13 C 0.049 3.951 14 N -0.532 5.532 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.608 6.608 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.200 0.800 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 3.885 20.161 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.358 4.358 5 S 0.492 5.508 6 C -0.429 4.429 7 C 0.373 3.627 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.038 3.962 11 H 0.079 0.921 12 C -0.209 4.209 13 C -0.079 4.079 14 N -0.256 5.256 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.494 6.494 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.185 0.815 32 H 0.217 0.783 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.489 3.766 19.990 21.676 hybrid contribution -1.621 0.289 -1.206 2.041 sum 5.867 4.056 18.784 20.093 Atomic orbital electron populations 1.20668 0.88950 1.03322 1.03053 1.19841 0.98253 0.91234 0.95928 1.20123 0.92857 0.99915 1.06268 1.25700 1.01097 1.02121 1.06869 1.82863 1.02022 0.98870 1.67044 1.24532 0.99261 0.97147 1.21939 1.17187 0.85945 0.83931 0.75655 1.90727 1.15770 1.85959 1.52728 1.45630 1.09699 1.05407 1.73773 1.21097 0.96952 0.80530 0.97617 0.92059 1.22056 1.02528 1.02159 0.94160 1.22580 0.99758 0.96386 0.89189 1.61487 1.03151 1.59371 1.01641 1.22408 0.91552 0.95992 1.01875 1.21705 0.95874 0.98725 0.91040 1.20711 0.84975 0.85396 0.85897 1.90449 1.27804 1.47658 1.83457 1.41967 1.20401 1.46558 1.12573 1.19644 1.05897 1.28948 0.91468 0.90246 1.26049 0.94840 0.98089 1.02422 1.69683 1.10309 1.42108 1.34307 0.84939 0.77884 0.78346 0.77242 1.19354 1.19673 1.19778 0.90048 0.91927 0.89940 0.81506 0.78256 0.75925 0.90449 0.93703 0.89622 0.87284 0.91169 0.94717 0.92978 0.89710 0.91392 0.89359 0.77378 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 9.55 71.24 0.68 -2.00 16 2 C -0.04 -0.99 5.91 -20.41 -0.12 -1.11 16 3 C -0.16 -3.39 9.97 21.08 0.21 -3.18 16 4 C -0.22 -4.10 10.92 66.81 0.73 -3.37 16 5 S 0.22 4.90 22.16 -56.49 -1.25 3.65 16 6 C -0.31 -9.04 6.45 24.07 0.16 -8.89 16 7 C 0.59 19.20 7.75 86.42 0.67 19.87 16 8 O -0.57 -21.95 13.90 -4.36 -0.06 -22.01 16 9 N -0.70 -18.89 4.79 -446.59 -2.14 -21.03 16 10 C 0.14 3.45 2.52 44.99 0.11 3.56 16 11 H 0.06 1.86 6.22 -2.39 -0.01 1.84 16 12 C -0.15 -2.75 9.49 71.98 0.68 -2.07 16 13 C 0.05 1.02 4.53 86.30 0.39 1.41 16 14 N -0.53 -16.15 4.17 -927.04 -3.87 -20.02 16 15 C 0.03 0.85 9.19 127.69 1.17 2.02 16 16 C 0.06 2.10 5.30 85.56 0.45 2.55 16 17 C 0.44 21.73 7.42 87.66 0.65 22.38 16 18 O -0.61 -33.54 13.96 -3.05 -0.04 -33.58 16 19 N -0.58 -30.93 5.29 -306.99 -1.62 -32.55 16 20 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -51.57 13.05 21.66 0.28 -51.29 16 24 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.08 6.02 -2.39 -0.01 2.06 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.41 9.83 7.72 -92.71 -0.72 9.12 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.11 1.70 7.99 -2.39 -0.02 1.68 16 38 H 0.07 1.25 8.05 -2.39 -0.02 1.24 16 39 H 0.03 0.85 8.13 -2.39 -0.02 0.83 16 40 H 0.05 1.99 5.79 -2.39 -0.01 1.98 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 43 H 0.09 3.21 6.50 -2.39 -0.02 3.19 16 44 H 0.39 20.36 7.90 -92.71 -0.73 19.63 16 45 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.19 385.23 -0.02 -75.22 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.42 Total: 43.13 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 7.07 Total: 12.38 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -7.35 Total: -124.89 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.10 Total: -55.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.25 Total: 3.65 kcal Total: -75.19 -0.02 -75.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322104396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.832 kcal (2) G-P(sol) polarization free energy of solvation -75.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds