Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37468 * 123.35134 * 2 1 4 4 C 1.33821 * 115.09961 * 179.76471 * 3 2 1 5 5 S 1.70611 * 110.95706 * 0.48731 * 4 3 2 6 6 C 1.36651 * 123.35035 * 180.29133 * 2 1 3 7 7 C 1.46583 * 125.45897 * 0.02562 * 6 2 1 8 8 O 1.21699 * 119.99878 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99715 * 179.97438 * 7 6 2 10 10 C 1.46503 * 119.99826 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47047 * 322.99367 * 10 9 7 12 12 C 1.53004 * 109.46809 * 82.99316 * 10 9 7 13 13 C 1.53001 * 109.47150 * 202.99340 * 10 9 7 14 14 N 1.46893 * 109.47400 * 55.16491 * 13 10 9 15 15 C 1.46896 * 111.00577 * 198.92850 * 14 13 10 16 16 C 1.46908 * 110.99985 * 74.96988 * 14 13 10 17 17 C 1.50702 * 109.47201 * 190.00092 * 16 14 13 18 18 O 1.21294 * 119.99681 * 0.02562 * 17 16 14 19 19 N 1.34774 * 119.99784 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99744 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00078 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99936 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99888 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47285 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47260 * 119.99626 * 24 22 20 27 27 H 1.48514 * 109.46775 * 239.99421 * 24 22 20 28 28 H 1.09002 * 109.47115 * 269.70868 * 1 2 3 29 29 H 1.09001 * 109.47055 * 149.70840 * 1 2 3 30 30 H 1.08997 * 109.47007 * 29.71027 * 1 2 3 31 31 H 1.08002 * 122.45145 * 0.02562 * 3 2 1 32 32 H 1.08007 * 124.51969 * 180.21072 * 4 3 2 33 33 H 0.96997 * 120.00425 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.47275 * 60.00190 * 12 10 9 35 35 H 1.09001 * 109.46849 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46919 * 299.99574 * 12 10 9 37 37 H 1.08999 * 109.46760 * 175.16672 * 13 10 9 38 38 H 1.08998 * 109.47082 * 295.16304 * 13 10 9 39 39 H 1.09003 * 109.46820 * 54.11934 * 15 14 13 40 40 H 1.08998 * 109.47655 * 174.11930 * 15 14 13 41 41 H 1.09005 * 109.46977 * 294.12719 * 15 14 13 42 42 H 1.08994 * 109.46981 * 310.00679 * 16 14 13 43 43 H 1.09000 * 109.46358 * 70.00460 * 16 14 13 44 44 H 0.97000 * 119.99999 * 359.97438 * 19 17 16 45 45 H 0.96995 * 119.99554 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1483 0.0000 4 6 3.5871 0.9562 0.0050 5 16 3.9624 -0.7081 -0.0035 6 6 2.2582 -1.1415 -0.0058 7 6 1.7284 -2.5082 -0.0133 8 8 0.5257 -2.6945 -0.0152 9 7 2.5731 -3.5583 -0.0191 10 6 2.0436 -4.9243 -0.0260 11 1 1.1473 -4.9696 0.5927 12 6 1.6946 -5.3287 -1.4598 13 6 3.0976 -5.8827 0.5321 14 7 3.5173 -5.4273 1.8641 15 6 4.8059 -6.0226 2.2423 16 6 2.4868 -5.7200 2.8694 17 6 2.8356 -5.0286 4.1623 18 8 3.8432 -4.3577 4.2385 19 7 2.0280 -5.1559 5.2337 20 6 2.3450 -4.5265 6.4096 21 1 3.2422 -3.9291 6.4776 22 6 1.5126 -4.6581 7.5144 23 7 0.4212 -5.3855 7.4319 24 14 1.9442 -3.8000 9.1165 25 1 3.2141 -3.0487 8.9491 26 1 0.8559 -2.8582 9.4824 27 1 2.1059 -4.8115 10.1918 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8925 -0.5093 31 1 1.8201 2.1334 0.0004 32 1 4.3205 1.7491 0.0090 33 1 3.5316 -3.4098 -0.0179 34 1 2.5909 -5.2833 -2.0785 35 1 1.3002 -6.3448 -1.4649 36 1 0.9437 -4.6459 -1.8573 37 1 2.6743 -6.8843 0.6072 38 1 3.9602 -5.9018 -0.1339 39 1 5.5420 -5.8197 1.4644 40 1 5.1436 -5.5899 3.1839 41 1 4.6881 -7.0999 2.3588 42 1 1.5208 -5.3611 2.5146 43 1 2.4362 -6.7961 3.0350 44 1 1.2220 -5.6921 5.1725 45 1 -0.1600 -5.4770 8.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322104397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -34.853312 kcal Electronic energy + Delta-G solvation = -27538.918621 eV Core-core repulsion = 23683.250353 eV Total energy + Delta-G solvation = -3855.668268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.92888 -38.69606 -37.90457 -36.73699 -34.67597 -33.73646 -31.48079 -31.20650 -30.71741 -28.04807 -27.88151 -26.93794 -24.68009 -23.73542 -22.70013 -21.67981 -20.53009 -19.11196 -18.88005 -18.15237 -17.80559 -16.27567 -16.08786 -15.82018 -15.32051 -15.12035 -14.79343 -14.69567 -14.31899 -13.96490 -13.72349 -13.60259 -13.53460 -13.35894 -13.18085 -12.84167 -12.46765 -12.30410 -12.11361 -12.08955 -12.01478 -11.79371 -11.77019 -11.46286 -11.40678 -11.21203 -11.03519 -10.90801 -10.62557 -10.32010 -10.19374 -9.72669 -9.45328 -9.05016 -8.72877 -8.44467 -8.43564 -7.95545 -7.84943 -6.38255 -3.78765 0.52325 1.48346 1.86888 2.36940 3.18346 3.20469 3.28634 3.35690 3.37175 3.93699 3.99581 4.25571 4.71317 4.80224 4.91087 5.09185 5.16047 5.18181 5.23587 5.30142 5.31282 5.42265 5.53328 5.55895 5.62346 5.67076 5.75662 5.79588 5.89777 5.91497 5.98239 5.99528 6.03447 6.12566 6.31274 6.32921 6.47102 6.52493 6.63061 7.23809 7.34843 7.58542 7.62886 8.09954 8.33283 8.65484 9.21760 9.58436 10.10162 10.79711 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.003588 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.631133 B = 7802.292077 C = 9174.771902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.233 4.233 5 S 0.205 5.795 6 C -0.267 4.267 7 C 0.595 3.405 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.161 4.161 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.023 3.977 16 C 0.044 3.956 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.167 0.833 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.015 0.985 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 4.616 -19.409 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.181 4.181 4 C -0.371 4.371 5 S 0.473 5.527 6 C -0.388 4.388 7 C 0.381 3.619 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.087 4.087 14 N -0.240 5.240 15 C -0.125 4.125 16 C -0.087 4.087 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.235 0.765 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.508 4.548 -19.220 20.504 hybrid contribution -1.233 0.256 1.007 1.612 sum 4.276 4.804 -18.213 19.315 Atomic orbital electron populations 1.20723 0.88782 1.03524 1.03250 1.19508 0.97861 0.90425 0.96271 1.19903 0.92597 0.99608 1.06004 1.25246 1.00665 1.01998 1.09143 1.83043 1.04203 0.97942 1.67489 1.24433 0.97206 0.97507 1.19614 1.16842 0.86122 0.82847 0.76057 1.90755 1.14357 1.85276 1.50850 1.45611 1.09643 1.05252 1.74613 1.20974 0.97507 0.80754 0.96476 0.89308 1.22154 1.01931 1.01860 0.96071 1.22500 0.98351 0.96261 0.91596 1.61549 1.03052 1.59130 1.00268 1.22554 0.90237 0.95984 1.03700 1.21931 0.95732 0.98304 0.92759 1.19691 0.86187 0.86302 0.84693 1.90468 1.27677 1.44019 1.83994 1.41866 1.23063 1.45271 1.09919 1.19728 1.08743 1.26947 0.87218 0.87920 1.25251 0.95479 0.97480 0.99747 1.69622 1.13123 1.39789 1.31770 0.85823 0.78628 0.78894 0.81131 1.19251 1.20752 1.20799 0.90568 0.88914 0.91968 0.83987 0.81559 0.76549 0.92485 0.91568 0.91711 0.93137 0.90302 0.92353 0.88399 0.96671 0.89523 0.93438 0.77548 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.55 36.01 0.34 -0.97 16 2 C -0.03 -0.34 5.90 -105.48 -0.62 -0.96 16 3 C -0.15 -1.67 9.97 -41.41 -0.41 -2.08 16 4 C -0.23 -2.41 10.92 29.18 0.32 -2.09 16 5 S 0.20 2.34 22.16 -107.50 -2.38 -0.05 16 6 C -0.27 -3.81 6.45 -36.79 -0.24 -4.05 16 7 C 0.59 9.33 7.72 -12.90 -0.10 9.23 16 8 O -0.53 -9.58 13.92 5.19 0.07 -9.51 16 9 N -0.70 -9.52 4.82 -55.14 -0.27 -9.79 16 10 C 0.15 1.85 2.55 -67.93 -0.17 1.68 16 11 H 0.09 1.32 6.41 -51.93 -0.33 0.99 16 12 C -0.16 -1.62 9.46 37.16 0.35 -1.27 16 13 C 0.04 0.49 4.54 -3.83 -0.02 0.47 16 14 N -0.52 -8.12 4.16 -244.37 -1.02 -9.14 16 15 C 0.02 0.35 9.17 60.06 0.55 0.90 16 16 C 0.04 0.80 5.28 -4.97 -0.03 0.77 16 17 C 0.45 10.62 7.52 -10.99 -0.08 10.54 16 18 O -0.58 -15.39 13.88 5.55 0.08 -15.31 16 19 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.31 6.01 -51.93 -0.31 1.00 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.40 5.00 7.70 -40.82 -0.31 4.69 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.05 0.54 8.01 -51.93 -0.42 0.13 16 38 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 39 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 40 H 0.10 1.86 5.92 -51.93 -0.31 1.55 16 41 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 42 H 0.09 1.53 6.66 -51.93 -0.35 1.19 16 43 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 44 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -33.05 385.24 -8.90 -41.95 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -6.48 Total: 14.47 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.35 Total: 4.14 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.62 Total: -57.85 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.15 Total: -24.83 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.38 Total: -0.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.05 -8.90 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322104397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.093 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds