Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37468 * 123.35134 * 2 1 4 4 C 1.33821 * 115.09961 * 179.76471 * 3 2 1 5 5 S 1.70611 * 110.95706 * 0.48731 * 4 3 2 6 6 C 1.36651 * 123.35035 * 180.29133 * 2 1 3 7 7 C 1.46583 * 125.45897 * 0.02562 * 6 2 1 8 8 O 1.21699 * 119.99878 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99715 * 179.97438 * 7 6 2 10 10 C 1.46503 * 119.99826 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47047 * 322.99367 * 10 9 7 12 12 C 1.53004 * 109.46809 * 82.99316 * 10 9 7 13 13 C 1.53001 * 109.47150 * 202.99340 * 10 9 7 14 14 N 1.46893 * 109.47400 * 55.16491 * 13 10 9 15 15 C 1.46896 * 111.00577 * 198.92850 * 14 13 10 16 16 C 1.46908 * 110.99985 * 74.96988 * 14 13 10 17 17 C 1.50702 * 109.47201 * 190.00092 * 16 14 13 18 18 O 1.21294 * 119.99681 * 0.02562 * 17 16 14 19 19 N 1.34774 * 119.99784 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99744 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00078 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99936 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99888 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47285 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47260 * 119.99626 * 24 22 20 27 27 H 1.48514 * 109.46775 * 239.99421 * 24 22 20 28 28 H 1.09002 * 109.47115 * 269.70868 * 1 2 3 29 29 H 1.09001 * 109.47055 * 149.70840 * 1 2 3 30 30 H 1.08997 * 109.47007 * 29.71027 * 1 2 3 31 31 H 1.08002 * 122.45145 * 0.02562 * 3 2 1 32 32 H 1.08007 * 124.51969 * 180.21072 * 4 3 2 33 33 H 0.96997 * 120.00425 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.47275 * 60.00190 * 12 10 9 35 35 H 1.09001 * 109.46849 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46919 * 299.99574 * 12 10 9 37 37 H 1.08999 * 109.46760 * 175.16672 * 13 10 9 38 38 H 1.08998 * 109.47082 * 295.16304 * 13 10 9 39 39 H 1.09003 * 109.46820 * 54.11934 * 15 14 13 40 40 H 1.08998 * 109.47655 * 174.11930 * 15 14 13 41 41 H 1.09005 * 109.46977 * 294.12719 * 15 14 13 42 42 H 1.08994 * 109.46981 * 310.00679 * 16 14 13 43 43 H 1.09000 * 109.46358 * 70.00460 * 16 14 13 44 44 H 0.97000 * 119.99999 * 359.97438 * 19 17 16 45 45 H 0.96995 * 119.99554 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1483 0.0000 4 6 3.5871 0.9562 0.0050 5 16 3.9624 -0.7081 -0.0035 6 6 2.2582 -1.1415 -0.0058 7 6 1.7284 -2.5082 -0.0133 8 8 0.5257 -2.6945 -0.0152 9 7 2.5731 -3.5583 -0.0191 10 6 2.0436 -4.9243 -0.0260 11 1 1.1473 -4.9696 0.5927 12 6 1.6946 -5.3287 -1.4598 13 6 3.0976 -5.8827 0.5321 14 7 3.5173 -5.4273 1.8641 15 6 4.8059 -6.0226 2.2423 16 6 2.4868 -5.7200 2.8694 17 6 2.8356 -5.0286 4.1623 18 8 3.8432 -4.3577 4.2385 19 7 2.0280 -5.1559 5.2337 20 6 2.3450 -4.5265 6.4096 21 1 3.2422 -3.9291 6.4776 22 6 1.5126 -4.6581 7.5144 23 7 0.4212 -5.3855 7.4319 24 14 1.9442 -3.8000 9.1165 25 1 3.2141 -3.0487 8.9491 26 1 0.8559 -2.8582 9.4824 27 1 2.1059 -4.8115 10.1918 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8925 -0.5093 31 1 1.8201 2.1334 0.0004 32 1 4.3205 1.7491 0.0090 33 1 3.5316 -3.4098 -0.0179 34 1 2.5909 -5.2833 -2.0785 35 1 1.3002 -6.3448 -1.4649 36 1 0.9437 -4.6459 -1.8573 37 1 2.6743 -6.8843 0.6072 38 1 3.9602 -5.9018 -0.1339 39 1 5.5420 -5.8197 1.4644 40 1 5.1436 -5.5899 3.1839 41 1 4.6881 -7.0999 2.3588 42 1 1.5208 -5.3611 2.5146 43 1 2.4362 -6.7961 3.0350 44 1 1.2220 -5.6921 5.1725 45 1 -0.1600 -5.4770 8.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322104397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -58.775543 kcal Electronic energy + Delta-G solvation = -27539.955967 eV Core-core repulsion = 23683.250353 eV Total energy + Delta-G solvation = -3856.705613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.05874 -40.32153 -39.00597 -38.06214 -36.12057 -35.54007 -33.27703 -32.51540 -31.65742 -29.59985 -28.88243 -27.96467 -26.60976 -24.69613 -23.83666 -22.81142 -21.69710 -20.87894 -19.92446 -19.83239 -19.10364 -17.90618 -17.20194 -16.89859 -16.66323 -16.59578 -16.16423 -16.01219 -15.75799 -15.38101 -15.18650 -15.05799 -14.68509 -14.53664 -14.23868 -13.98146 -13.71137 -13.45010 -13.40411 -13.25822 -13.06618 -13.03454 -12.91430 -12.81569 -12.69109 -12.63031 -12.46388 -12.36945 -12.12739 -11.83374 -11.71616 -11.45057 -10.89980 -10.27150 -10.14099 -9.99978 -9.68324 -9.35581 -9.19806 -8.46777 -5.95300 -0.44118 0.55890 0.97237 1.35188 1.39694 1.43198 1.54187 2.05443 2.13478 2.26999 2.29566 2.78956 3.20076 3.37054 3.78233 3.91154 3.99474 4.13016 4.18619 4.28117 4.33681 4.39205 4.43539 4.50989 4.57706 4.65256 4.66709 4.71566 4.75838 4.78455 4.82409 5.00103 5.05123 5.08164 5.24263 5.29950 5.40269 5.40511 5.48485 5.58957 5.87497 6.06867 6.21769 6.54176 6.60205 7.12978 7.21740 7.56349 8.11965 8.71243 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.003588 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.631133 B = 7802.292077 C = 9174.771902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.036 4.036 3 C -0.161 4.161 4 C -0.220 4.220 5 S 0.223 5.777 6 C -0.309 4.309 7 C 0.585 3.415 8 O -0.569 6.569 9 N -0.696 5.696 10 C 0.144 3.856 11 H 0.059 0.941 12 C -0.151 4.151 13 C 0.048 3.952 14 N -0.533 5.533 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.608 6.608 19 N -0.578 5.578 20 C -0.329 4.329 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.200 0.800 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 4.849 -20.462 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.052 4.052 3 C -0.191 4.191 4 C -0.358 4.358 5 S 0.491 5.509 6 C -0.429 4.429 7 C 0.373 3.627 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.040 3.960 11 H 0.078 0.922 12 C -0.209 4.209 13 C -0.079 4.079 14 N -0.257 5.257 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.494 6.494 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.185 0.815 32 H 0.217 0.783 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.730 4.750 -20.298 21.906 hybrid contribution -1.545 0.214 1.268 2.010 sum 5.185 4.964 -19.030 20.339 Atomic orbital electron populations 1.20673 0.88931 1.03901 1.02507 1.19838 0.98258 0.91216 0.95929 1.20126 0.92833 0.99927 1.06246 1.25703 1.01121 1.02106 1.06873 1.82892 1.02049 0.98885 1.67035 1.24537 0.99239 0.97151 1.21949 1.17189 0.85947 0.83916 0.75679 1.90723 1.15753 1.85973 1.52729 1.45643 1.09713 1.05419 1.73748 1.21080 0.96728 0.80526 0.97709 0.92244 1.22057 1.02299 1.02290 0.94292 1.22578 0.99301 0.96613 0.89457 1.61462 1.02650 1.60339 1.01238 1.22444 0.90509 0.96338 1.02654 1.21730 0.96555 0.98608 0.90410 1.20728 0.85020 0.85337 0.85900 1.90446 1.28863 1.45194 1.84872 1.41965 1.23612 1.45783 1.10165 1.19684 1.08840 1.28329 0.89021 0.90257 1.26047 0.95111 0.97780 1.02482 1.69690 1.13598 1.40248 1.32899 0.84883 0.78242 0.78082 0.77210 1.19649 1.19820 1.19414 0.91777 0.90972 0.89150 0.81471 0.78270 0.75924 0.90495 0.89643 0.93715 0.91087 0.87278 0.89272 0.92743 0.95251 0.89262 0.91303 0.77354 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.55 71.24 0.68 -1.96 16 2 C -0.04 -0.97 5.90 -20.42 -0.12 -1.09 16 3 C -0.16 -3.32 9.97 21.08 0.21 -3.11 16 4 C -0.22 -4.04 10.92 66.82 0.73 -3.31 16 5 S 0.22 4.85 22.16 -56.49 -1.25 3.59 16 6 C -0.31 -8.94 6.45 24.08 0.16 -8.78 16 7 C 0.58 19.02 7.72 86.42 0.67 19.69 16 8 O -0.57 -21.71 13.92 -4.35 -0.06 -21.77 16 9 N -0.70 -18.82 4.82 -446.58 -2.15 -20.97 16 10 C 0.14 3.48 2.55 44.99 0.11 3.60 16 11 H 0.06 1.80 6.41 -2.39 -0.02 1.78 16 12 C -0.15 -2.78 9.46 71.98 0.68 -2.10 16 13 C 0.05 1.00 4.54 86.30 0.39 1.40 16 14 N -0.53 -16.05 4.16 -927.06 -3.86 -19.91 16 15 C 0.03 0.81 9.17 127.69 1.17 1.98 16 16 C 0.06 2.09 5.28 85.56 0.45 2.55 16 17 C 0.44 21.63 7.52 87.66 0.66 22.29 16 18 O -0.61 -33.47 13.88 -3.07 -0.04 -33.51 16 19 N -0.58 -30.81 5.29 -306.98 -1.62 -32.43 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -51.45 13.05 21.66 0.28 -51.17 16 24 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.17 6.01 -2.39 -0.01 2.16 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.41 9.83 7.70 -92.71 -0.71 9.12 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 37 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 38 H 0.11 1.68 7.81 -2.39 -0.02 1.66 16 39 H 0.09 1.98 7.94 -2.39 -0.02 1.96 16 40 H 0.05 2.07 5.92 -2.39 -0.01 2.05 16 41 H 0.03 0.75 8.13 -2.38 -0.02 0.73 16 42 H 0.09 3.19 6.66 -2.39 -0.02 3.17 16 43 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 44 H 0.39 20.25 7.90 -92.71 -0.73 19.51 16 45 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -75.11 385.24 -0.02 -75.13 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -0.42 Total: 42.55 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 7.07 Total: 12.43 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -7.35 Total: -124.49 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.10 Total: -55.28 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.25 Total: 3.59 kcal Total: -75.11 -0.02 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322104397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.353 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds