Wall clock time and date at job start Sat Apr 11 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46866 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00348 * 180.02562 * 9 8 7 11 11 O 1.21355 * 119.99389 * 359.97438 * 10 9 8 12 12 C 1.49443 * 120.00234 * 180.02562 * 10 9 8 13 13 O 1.21348 * 120.00441 * 0.02562 * 12 10 9 14 14 N 1.34784 * 119.99665 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99667 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.46918 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47350 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47605 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99903 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00388 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99814 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00291 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47061 * 60.00584 * 22 20 18 24 24 H 1.48502 * 109.47224 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47416 * 300.00961 * 22 20 18 26 26 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 30 30 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 33 33 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 34 34 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 35 35 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 36 36 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 37 37 H 0.97001 * 120.00125 * 0.02562 * 9 8 7 38 38 H 0.97001 * 120.00095 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.47292 * 300.00054 * 15 14 12 40 40 H 1.09004 * 109.47441 * 59.99944 * 15 14 12 41 41 H 1.08998 * 109.47176 * 299.99497 * 16 15 14 42 42 H 1.08998 * 109.47499 * 60.00032 * 16 15 14 43 43 H 1.09000 * 109.47150 * 300.00034 * 17 16 15 44 44 H 1.09004 * 109.47151 * 59.99659 * 17 16 15 45 45 H 0.97006 * 120.00134 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 7 6.1237 -4.0342 -2.8494 10 6 6.9846 -5.0400 -3.1018 11 8 7.4988 -5.6434 -2.1830 12 6 7.3067 -5.4114 -4.5130 13 8 6.7936 -4.8071 -5.4318 14 7 8.1681 -6.4169 -4.7654 15 6 8.4834 -6.7814 -6.1488 16 6 9.4778 -7.9441 -6.1558 17 6 9.8068 -8.3252 -7.6006 18 6 10.7867 -9.4700 -7.6076 19 1 11.1394 -9.8847 -6.6747 20 6 11.2324 -9.9888 -8.8047 21 7 10.8026 -9.4843 -9.9406 22 14 12.4476 -11.4074 -8.8133 23 1 11.8505 -12.5751 -8.1166 24 1 12.7668 -11.7774 -10.2157 25 1 13.6922 -10.9974 -8.1145 26 7 2.2199 -1.1083 -0.0064 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5184 29 1 -0.3633 0.8926 -0.5093 30 1 1.8392 2.1308 0.0005 31 1 5.3966 -1.8274 0.5002 32 1 4.0439 -2.9843 0.4958 33 1 3.9003 -2.8071 -1.9733 34 1 5.2530 -1.6502 -1.9690 35 1 6.7213 -3.3696 -0.9517 36 1 5.3690 -4.5269 -0.9559 37 1 5.7129 -3.5516 -3.5837 38 1 8.5785 -6.8997 -4.0310 39 1 7.5703 -7.0817 -6.6626 40 1 8.9225 -5.9242 -6.6594 41 1 10.3911 -7.6442 -5.6419 42 1 9.0385 -8.8011 -5.6454 43 1 8.8934 -8.6253 -8.1142 44 1 10.2460 -7.4683 -8.1114 45 1 11.1164 -9.8491 -10.7830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322648030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:17 Heat of formation + Delta-G solvation = -55.563646 kcal Electronic energy + Delta-G solvation = -24586.558394 eV Core-core repulsion = 20729.992059 eV Total energy + Delta-G solvation = -3856.566335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64375 -40.36888 -38.60576 -36.60311 -35.62664 -34.14425 -33.30200 -31.71826 -31.24876 -28.48410 -27.90061 -27.05063 -24.82684 -23.40953 -22.31296 -22.05748 -20.78151 -20.24910 -20.06137 -18.37176 -18.12520 -16.95640 -16.42781 -16.34561 -16.06777 -15.64545 -15.49719 -15.29589 -14.98837 -14.69476 -14.45166 -14.01954 -13.97659 -13.68791 -13.52084 -13.37194 -13.01502 -12.68057 -12.51751 -12.30261 -12.07020 -11.89782 -11.80635 -11.80145 -11.69566 -11.47429 -10.89211 -10.76203 -10.63302 -10.13441 -9.91159 -9.90106 -9.79971 -9.52694 -9.38723 -9.19184 -9.14243 -8.98754 -8.37626 -6.02557 -4.05687 0.18842 0.86174 1.24738 1.40345 2.21752 2.35909 3.21341 3.32655 3.37256 3.39403 3.45206 3.65744 4.17068 4.38630 4.43186 4.47302 4.54466 4.61737 4.70227 4.78164 4.89873 5.04667 5.08729 5.17399 5.23650 5.33403 5.38475 5.52746 5.57939 5.58980 5.68772 5.75449 5.93611 6.07677 6.26297 6.53768 6.68272 6.88532 6.94943 7.25576 7.38399 7.61366 7.69975 7.73225 7.95541 8.03976 8.36891 9.00554 9.58680 11.08660 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037675 B = 0.001264 C = 0.001251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.012303 B =22149.434722 C =22368.665468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.068 3.932 3 C -0.266 4.266 4 S 0.122 5.878 5 C 0.056 3.944 6 C -0.041 4.041 7 C -0.127 4.127 8 C 0.119 3.881 9 N -0.705 5.705 10 C 0.509 3.491 11 O -0.520 6.520 12 C 0.500 3.500 13 O -0.527 6.527 14 N -0.691 5.691 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.025 3.975 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.470 5.470 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.347 23.154 23.530 37.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.405 4.405 4 S 0.377 5.623 5 C -0.222 4.222 6 C -0.082 4.082 7 C -0.167 4.167 8 C -0.005 4.005 9 N -0.359 5.359 10 C 0.290 3.710 11 O -0.395 6.395 12 C 0.280 3.720 13 O -0.404 6.404 14 N -0.343 5.343 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 N -0.185 5.185 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.194 0.806 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.583 23.154 23.337 37.281 hybrid contribution -0.284 -0.630 -0.104 0.699 sum -17.867 22.524 23.233 36.964 Atomic orbital electron populations 1.20383 0.86982 1.03535 1.03063 1.20348 0.98387 0.86440 1.01189 1.26844 0.95139 1.04081 1.14448 1.84095 1.07372 1.02942 1.67898 1.26968 0.94056 0.98281 1.02939 1.20173 0.95853 0.94337 0.97854 1.21798 1.00149 0.98486 0.96248 1.21421 0.98948 0.97592 0.82496 1.45716 1.45465 1.35129 1.09596 1.20340 0.79917 0.80779 0.89986 1.90767 1.50821 1.51767 1.46127 1.19994 0.81174 0.81970 0.88907 1.90762 1.51536 1.52273 1.45789 1.46074 1.43501 1.33475 1.11216 1.21850 1.00114 0.99251 0.79642 1.21930 0.96648 0.94933 1.02583 1.19028 0.96931 0.96666 0.88680 1.21167 1.25963 1.16751 0.92354 0.92620 1.25015 0.96596 0.97100 0.95645 1.69952 1.44168 1.41867 0.97311 0.86637 0.81596 0.82673 0.76961 1.20218 1.21268 1.20222 1.66130 1.04516 1.31704 1.16154 0.90556 0.90410 0.90644 0.80612 0.88928 0.88056 0.90048 0.90523 0.90559 0.90479 0.74990 0.75292 0.91079 0.91068 0.92414 0.92414 0.96195 0.96200 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.31 36.01 0.37 -0.02 16 2 C 0.07 0.50 6.74 -84.22 -0.57 -0.06 16 3 C -0.27 -1.61 11.13 29.12 0.32 -1.29 16 4 S 0.12 0.71 23.18 -107.50 -2.49 -1.78 16 5 C 0.06 0.39 6.64 -13.46 -0.09 0.30 16 6 C -0.04 -0.20 5.80 -27.88 -0.16 -0.36 16 7 C -0.13 -0.66 5.31 -26.73 -0.14 -0.80 16 8 C 0.12 0.81 5.67 -4.04 -0.02 0.79 16 9 N -0.70 -6.60 5.55 -60.73 -0.34 -6.94 16 10 C 0.51 6.45 7.89 -11.59 -0.09 6.36 16 11 O -0.52 -7.53 16.48 5.49 0.09 -7.44 16 12 C 0.50 7.35 7.89 -11.59 -0.09 7.25 16 13 O -0.53 -8.82 16.48 5.50 0.09 -8.73 16 14 N -0.69 -10.26 5.55 -60.73 -0.34 -10.60 16 15 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 N -0.47 -4.14 10.53 -8.06 -0.08 -4.23 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.24 8.12 -51.93 -0.42 -0.18 16 30 H 0.18 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.41 3.49 7.94 -40.82 -0.32 3.17 16 38 H 0.41 5.56 7.94 -40.82 -0.32 5.24 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -33.88 401.88 -9.44 -43.31 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.95 Total: 1.10 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.18 Total: -1.29 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.02 Total: -47.65 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.18 Total: -16.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.49 Total: -1.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.88 -9.44 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322648030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.253 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds