Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34043 * 126.77568 * 2 1 4 4 N 1.20931 * 111.56349 * 180.28339 * 3 2 1 5 5 C 1.30169 * 111.60763 * 359.76013 * 4 3 2 6 6 C 1.35450 * 126.77708 * 179.87971 * 2 1 3 7 7 C 1.50700 * 128.00709 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47174 * 79.70156 * 7 6 2 9 9 C 1.46900 * 111.00018 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46954 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.87378 * 295.69863 * 10 9 8 12 12 C 1.54327 * 110.00988 * 174.59941 * 10 9 8 13 13 C 1.55153 * 102.94211 * 218.31833 * 12 10 9 14 14 C 1.54908 * 101.58630 * 35.49999 * 13 12 10 15 15 N 1.47022 * 109.88494 * 56.71642 * 10 9 8 16 16 C 1.34780 * 125.64449 * 298.54565 * 15 10 9 17 17 O 1.21278 * 120.00167 * 0.02562 * 16 15 10 18 18 C 1.50701 * 119.99984 * 179.97438 * 16 15 10 19 19 S 1.80994 * 109.47265 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00059 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99809 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00168 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00320 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47191 * 89.99662 * 24 22 20 26 26 H 1.48496 * 109.47070 * 210.00285 * 24 22 20 27 27 H 1.48513 * 109.46611 * 329.99960 * 24 22 20 28 28 H 1.09001 * 109.47717 * 270.11729 * 1 2 3 29 29 H 1.09001 * 109.47089 * 30.11861 * 1 2 3 30 30 H 1.09006 * 109.47197 * 150.11095 * 1 2 3 31 31 H 1.07994 * 126.80432 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.46961 * 319.69983 * 7 6 2 33 33 H 1.08997 * 109.47003 * 199.69830 * 7 6 2 34 34 H 1.00908 * 111.00152 * 303.95610 * 8 7 6 35 35 H 1.08994 * 109.47283 * 59.99867 * 9 8 7 36 36 H 1.08995 * 109.46806 * 299.99293 * 9 8 7 37 37 H 1.09006 * 110.71875 * 336.68167 * 12 10 9 38 38 H 1.09003 * 110.72034 * 99.95202 * 12 10 9 39 39 H 1.09006 * 111.00338 * 277.42810 * 13 12 10 40 40 H 1.08997 * 111.03848 * 153.59537 * 13 12 10 41 41 H 1.08992 * 110.36921 * 204.15530 * 14 13 12 42 42 H 1.09001 * 110.45822 * 81.87204 * 14 13 12 43 43 H 1.09009 * 109.47209 * 300.00496 * 18 16 15 44 44 H 1.09006 * 109.46881 * 59.99944 * 18 16 15 45 45 H 0.97004 * 120.00175 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7564 -0.0056 5 6 3.6214 -0.5372 -0.0049 6 6 2.3179 -1.0849 0.0023 7 6 1.9224 -2.5391 0.0048 8 7 1.5554 -2.9491 -1.3572 9 6 1.1627 -4.3642 -1.3932 10 6 0.7878 -4.7531 -2.8247 11 1 -0.0923 -4.1939 -3.1422 12 6 0.5037 -6.2680 -2.9031 13 6 1.1133 -6.6654 -4.2734 14 6 2.3526 -5.7386 -4.3431 15 7 1.9119 -4.4725 -3.7298 16 6 2.4507 -3.2587 -3.9602 17 8 2.0064 -2.2811 -3.3966 18 6 3.6060 -3.1166 -4.9173 19 16 4.1015 -1.3783 -5.0110 20 6 5.4278 -1.4999 -6.1646 21 1 5.6987 -2.4608 -6.5766 22 6 6.1244 -0.3609 -6.5437 23 7 5.7939 0.8103 -6.0420 24 14 7.5311 -0.4898 -7.7662 25 1 7.0051 -0.3257 -9.1452 26 1 8.5287 0.5740 -7.4869 27 1 8.1776 -1.8207 -7.6381 28 1 -0.3634 0.0021 1.0276 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3634 -0.8910 -0.5121 31 1 4.5528 -1.0839 -0.0094 32 1 1.0705 -2.6827 0.6694 33 1 2.7605 -3.1429 0.3526 34 1 0.8232 -2.3614 -1.7269 35 1 0.3054 -4.5201 -0.7384 36 1 1.9953 -4.9810 -1.0550 37 1 1.0029 -6.7965 -2.0910 38 1 -0.5691 -6.4604 -2.8879 39 1 0.4195 -6.4517 -5.0865 40 1 1.4090 -7.7145 -4.2806 41 1 2.6467 -5.5758 -5.3799 42 1 3.1804 -6.1662 -3.7773 43 1 4.4460 -3.7149 -4.5643 44 1 3.3036 -3.4624 -5.9058 45 1 6.2810 1.6063 -6.3067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324117045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = 48.888379 kcal Electronic energy + Delta-G solvation = -27852.529093 eV Core-core repulsion = 24000.492138 eV Total energy + Delta-G solvation = -3852.036955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.55511 -39.88457 -36.97796 -36.36609 -33.61009 -32.83402 -32.35442 -31.62741 -30.22038 -28.50812 -27.85794 -26.02557 -25.40463 -23.90513 -22.31877 -22.18585 -21.20023 -20.30296 -18.79266 -17.61087 -17.26067 -16.97217 -16.73161 -16.27104 -15.40708 -14.83395 -14.73715 -14.61371 -14.34349 -14.08726 -13.88907 -13.75622 -13.49016 -13.26354 -13.18918 -12.88397 -12.60256 -12.56457 -12.44784 -12.22985 -11.70976 -11.67432 -11.46496 -11.35570 -11.16069 -11.01245 -10.93432 -10.90410 -10.76911 -10.69570 -9.92481 -9.71742 -8.99347 -8.98909 -8.90254 -8.44049 -8.10245 -7.76836 -6.38269 -6.13741 -3.82564 1.76602 2.61359 3.07820 3.26337 3.31130 3.34981 3.39121 3.44387 3.76162 4.25279 4.28268 4.41793 4.62644 4.67779 4.76030 4.80635 4.93878 5.04788 5.19444 5.20952 5.24500 5.25913 5.30791 5.35557 5.41962 5.46859 5.53222 5.55458 5.62420 5.67913 5.69883 5.72421 5.78310 5.92689 5.93181 6.03820 6.06851 6.11539 6.28165 6.38849 6.64732 7.17924 7.66438 7.67778 7.97801 8.42455 8.62833 8.95414 9.31301 10.93371 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007872 B = 0.004646 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.870531 B = 6024.797915 C = 9080.603488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.035 4.035 3 O 0.095 5.905 4 N -0.363 5.363 5 C 0.016 3.984 6 C -0.184 4.184 7 C 0.137 3.863 8 N -0.649 5.649 9 C 0.050 3.950 10 C 0.142 3.858 11 H 0.068 0.932 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.101 3.899 15 N -0.618 5.618 16 C 0.549 3.451 17 O -0.474 6.474 18 C -0.144 4.144 19 S -0.056 6.056 20 C -0.535 4.535 21 H 0.070 0.930 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.915 3.085 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.185 0.815 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.353 0.647 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 -14.688 11.623 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 O 0.030 5.970 4 N -0.067 5.067 5 C -0.163 4.163 6 C -0.189 4.189 7 C 0.008 3.992 8 N -0.285 5.285 9 C -0.080 4.080 10 C 0.037 3.963 11 H 0.086 0.914 12 C -0.164 4.164 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.344 6.344 18 C -0.295 4.295 19 S 0.171 5.829 20 C -0.684 4.684 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.742 3.258 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.203 0.797 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.176 0.824 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.108 -11.978 12.250 21.572 hybrid contribution 0.550 -2.121 -1.187 2.492 sum -12.558 -14.099 11.064 21.884 Atomic orbital electron populations 1.20230 0.84751 1.04411 1.03170 1.24118 0.95895 0.86271 1.03686 1.84785 1.11528 1.32993 1.67698 1.73856 0.96778 1.16998 1.19054 1.24774 0.99626 0.90019 1.01890 1.20823 0.92390 0.96566 1.09074 1.20066 0.99315 0.89050 0.90745 1.60994 1.47444 1.01865 1.18219 1.22432 0.98703 0.91324 0.95590 1.21469 0.90112 0.95104 0.89596 0.91406 1.22636 1.01482 0.94166 0.98094 1.22759 0.97352 0.99500 0.97409 1.22215 0.96606 0.84619 0.98808 1.48433 1.34984 1.06686 1.45640 1.19679 0.83489 0.81265 0.81964 1.90602 1.60910 1.36241 1.46619 1.23482 0.98290 1.07717 0.99978 1.85379 1.41632 0.97554 1.58321 1.22881 1.19272 0.96563 1.29642 0.91195 1.24964 0.97459 0.94531 0.96557 1.70025 1.39978 0.98387 1.41839 0.86225 0.80971 0.77970 0.80669 1.20325 1.20798 1.19747 0.90042 0.89756 0.89881 0.79749 0.95106 0.90511 0.82359 0.95323 0.91173 0.90545 0.90335 0.90663 0.90117 0.90706 0.91901 0.90072 0.90149 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.30 36.00 0.37 -0.28 16 2 C -0.04 -0.50 7.49 -35.31 -0.26 -0.77 16 3 O 0.10 1.64 11.20 17.17 0.19 1.83 16 4 N -0.36 -6.90 12.07 30.36 0.37 -6.53 16 5 C 0.02 0.28 12.16 -17.06 -0.21 0.07 16 6 C -0.18 -2.75 5.84 -104.42 -0.61 -3.36 16 7 C 0.14 1.70 6.01 -4.98 -0.03 1.67 16 8 N -0.65 -8.92 3.28 -115.06 -0.38 -9.29 16 9 C 0.05 0.53 5.27 -3.82 -0.02 0.51 16 10 C 0.14 1.53 3.28 -66.95 -0.22 1.31 16 11 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.13 -0.92 6.48 -24.90 -0.16 -1.08 16 13 C -0.13 -1.00 7.08 -24.59 -0.17 -1.18 16 14 C 0.10 1.08 6.69 -2.53 -0.02 1.07 16 15 N -0.62 -8.56 3.07 -163.02 -0.50 -9.06 16 16 C 0.55 10.27 7.44 -10.98 -0.08 10.19 16 17 O -0.47 -9.99 12.00 5.56 0.07 -9.92 16 18 C -0.14 -3.03 5.16 36.01 0.19 -2.85 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -15.67 9.50 30.94 0.29 -15.37 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -26.94 13.22 55.49 0.73 -26.20 16 24 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.73 7.48 -51.93 -0.39 0.34 16 31 H 0.19 2.87 8.06 -52.49 -0.42 2.44 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.35 5.19 6.83 -39.29 -0.27 4.93 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.08 0.50 7.81 -51.93 -0.41 0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.08 1.60 7.85 -51.91 -0.41 1.20 16 45 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -36.13 383.73 -8.90 -45.02 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.89 Total: 3.14 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.03 Total: -7.99 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.22 Total: -51.09 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.26 Total: -8.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.13 -8.90 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324117045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.909 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds