Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34043 * 126.77568 * 2 1 4 4 N 1.20931 * 111.56349 * 180.28339 * 3 2 1 5 5 C 1.30169 * 111.60763 * 359.76013 * 4 3 2 6 6 C 1.35450 * 126.77708 * 179.87971 * 2 1 3 7 7 C 1.50700 * 128.00709 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47174 * 79.70156 * 7 6 2 9 9 C 1.46900 * 111.00018 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46954 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.87378 * 295.69863 * 10 9 8 12 12 C 1.54327 * 110.00988 * 174.59941 * 10 9 8 13 13 C 1.55153 * 102.94211 * 218.31833 * 12 10 9 14 14 C 1.54908 * 101.58630 * 35.49999 * 13 12 10 15 15 N 1.47022 * 109.88494 * 56.71642 * 10 9 8 16 16 C 1.34780 * 125.64449 * 298.54565 * 15 10 9 17 17 O 1.21278 * 120.00167 * 0.02562 * 16 15 10 18 18 C 1.50701 * 119.99984 * 179.97438 * 16 15 10 19 19 S 1.80994 * 109.47265 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00059 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99809 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00168 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00320 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47191 * 89.99662 * 24 22 20 26 26 H 1.48496 * 109.47070 * 210.00285 * 24 22 20 27 27 H 1.48513 * 109.46611 * 329.99960 * 24 22 20 28 28 H 1.09001 * 109.47717 * 270.11729 * 1 2 3 29 29 H 1.09001 * 109.47089 * 30.11861 * 1 2 3 30 30 H 1.09006 * 109.47197 * 150.11095 * 1 2 3 31 31 H 1.07994 * 126.80432 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.46961 * 319.69983 * 7 6 2 33 33 H 1.08997 * 109.47003 * 199.69830 * 7 6 2 34 34 H 1.00908 * 111.00152 * 303.95610 * 8 7 6 35 35 H 1.08994 * 109.47283 * 59.99867 * 9 8 7 36 36 H 1.08995 * 109.46806 * 299.99293 * 9 8 7 37 37 H 1.09006 * 110.71875 * 336.68167 * 12 10 9 38 38 H 1.09003 * 110.72034 * 99.95202 * 12 10 9 39 39 H 1.09006 * 111.00338 * 277.42810 * 13 12 10 40 40 H 1.08997 * 111.03848 * 153.59537 * 13 12 10 41 41 H 1.08992 * 110.36921 * 204.15530 * 14 13 12 42 42 H 1.09001 * 110.45822 * 81.87204 * 14 13 12 43 43 H 1.09009 * 109.47209 * 300.00496 * 18 16 15 44 44 H 1.09006 * 109.46881 * 59.99944 * 18 16 15 45 45 H 0.97004 * 120.00175 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7564 -0.0056 5 6 3.6214 -0.5372 -0.0049 6 6 2.3179 -1.0849 0.0023 7 6 1.9224 -2.5391 0.0048 8 7 1.5554 -2.9491 -1.3572 9 6 1.1627 -4.3642 -1.3932 10 6 0.7878 -4.7531 -2.8247 11 1 -0.0923 -4.1939 -3.1422 12 6 0.5037 -6.2680 -2.9031 13 6 1.1133 -6.6654 -4.2734 14 6 2.3526 -5.7386 -4.3431 15 7 1.9119 -4.4725 -3.7298 16 6 2.4507 -3.2587 -3.9602 17 8 2.0064 -2.2811 -3.3966 18 6 3.6060 -3.1166 -4.9173 19 16 4.1015 -1.3783 -5.0110 20 6 5.4278 -1.4999 -6.1646 21 1 5.6987 -2.4608 -6.5766 22 6 6.1244 -0.3609 -6.5437 23 7 5.7939 0.8103 -6.0420 24 14 7.5311 -0.4898 -7.7662 25 1 7.0051 -0.3257 -9.1452 26 1 8.5287 0.5740 -7.4869 27 1 8.1776 -1.8207 -7.6381 28 1 -0.3634 0.0021 1.0276 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3634 -0.8910 -0.5121 31 1 4.5528 -1.0839 -0.0094 32 1 1.0705 -2.6827 0.6694 33 1 2.7605 -3.1429 0.3526 34 1 0.8232 -2.3614 -1.7269 35 1 0.3054 -4.5201 -0.7384 36 1 1.9953 -4.9810 -1.0550 37 1 1.0029 -6.7965 -2.0910 38 1 -0.5691 -6.4604 -2.8879 39 1 0.4195 -6.4517 -5.0865 40 1 1.4090 -7.7145 -4.2806 41 1 2.6467 -5.5758 -5.3799 42 1 3.1804 -6.1662 -3.7773 43 1 4.4460 -3.7149 -4.5643 44 1 3.3036 -3.4624 -5.9058 45 1 6.2810 1.6063 -6.3067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324117045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = 25.143659 kcal Electronic energy + Delta-G solvation = -27853.558741 eV Core-core repulsion = 24000.492138 eV Total energy + Delta-G solvation = -3853.066604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.83966 -40.97143 -38.20627 -37.36440 -34.70889 -34.59585 -33.99971 -32.74089 -31.12512 -29.98253 -28.82798 -27.65986 -27.00386 -24.87896 -23.51716 -23.21301 -21.99982 -21.44315 -20.17555 -19.37689 -18.56752 -18.23734 -17.89622 -17.36948 -16.89314 -16.51298 -16.17688 -15.79406 -15.64935 -15.40086 -15.13003 -14.78496 -14.61448 -14.43225 -14.04582 -13.95028 -13.86227 -13.73807 -13.42223 -13.30360 -13.11202 -13.02492 -12.88292 -12.70079 -12.58511 -12.46113 -12.08730 -12.03767 -11.80167 -11.69117 -11.53279 -11.21089 -11.15191 -10.40958 -10.21442 -10.05471 -9.50962 -8.76007 -8.62154 -8.35077 -6.11091 0.59779 1.27177 1.34510 1.39074 1.46294 1.58039 1.99044 2.25009 2.31095 2.36089 2.98448 3.31278 3.39692 3.49668 3.70113 3.74792 3.85765 3.88716 4.03043 4.16661 4.21526 4.29440 4.37124 4.41518 4.50047 4.51519 4.62056 4.66668 4.68230 4.68509 4.78703 4.79970 4.90569 4.91930 5.02181 5.04142 5.16211 5.21636 5.30131 5.39135 5.43453 5.66571 6.17852 6.30126 6.66685 6.73207 7.05849 7.37649 7.57313 8.73604 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007872 B = 0.004646 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.870531 B = 6024.797915 C = 9080.603488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.033 4.033 3 O 0.078 5.922 4 N -0.405 5.405 5 C -0.005 4.005 6 C -0.194 4.194 7 C 0.145 3.855 8 N -0.675 5.675 9 C 0.053 3.947 10 C 0.135 3.865 11 H 0.061 0.939 12 C -0.113 4.113 13 C -0.121 4.121 14 C 0.089 3.911 15 N -0.612 5.612 16 C 0.546 3.454 17 O -0.504 6.504 18 C -0.119 4.119 19 S -0.138 6.138 20 C -0.548 4.548 21 H 0.077 0.923 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.995 3.005 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.188 0.812 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.346 0.654 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 -18.122 11.584 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 O 0.015 5.985 4 N -0.111 5.111 5 C -0.183 4.183 6 C -0.198 4.198 7 C 0.016 3.984 8 N -0.311 5.311 9 C -0.076 4.076 10 C 0.031 3.969 11 H 0.079 0.921 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.034 4.034 15 N -0.349 5.349 16 C 0.332 3.668 17 O -0.377 6.377 18 C -0.271 4.271 19 S 0.089 5.911 20 C -0.696 4.696 21 H 0.095 0.905 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.817 3.183 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.205 0.795 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.167 0.833 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.554 -15.481 12.221 24.512 hybrid contribution 0.894 -1.163 -1.145 1.861 sum -13.660 -16.645 11.076 24.214 Atomic orbital electron populations 1.20479 0.81176 1.05230 1.05422 1.25017 0.97761 0.85257 1.01723 1.84714 1.11424 1.34277 1.68044 1.73825 0.97987 1.18109 1.21195 1.25129 1.01168 0.90059 1.01954 1.21190 0.91257 0.98303 1.09034 1.20078 1.00347 0.87079 0.90880 1.60877 1.47875 1.03339 1.18997 1.22454 0.99753 0.89471 0.95936 1.21788 0.88412 0.97747 0.88911 0.92133 1.22650 1.03143 0.91011 0.98296 1.22747 0.95511 1.00023 0.97643 1.22516 0.98716 0.83868 0.98282 1.48312 1.35021 1.05978 1.45603 1.19210 0.83181 0.82740 0.81667 1.90604 1.61704 1.37773 1.47652 1.23300 0.99832 1.02242 1.01678 1.85496 1.42337 1.04487 1.58773 1.23216 1.19555 0.97118 1.29750 0.90532 1.26095 1.00463 0.93865 0.98593 1.70197 1.41625 0.99370 1.43637 0.85006 0.76923 0.78545 0.77837 1.19066 1.20311 1.18260 0.86856 0.89234 0.88674 0.79453 0.92071 0.90516 0.83260 0.92371 0.91237 0.89013 0.88007 0.90649 0.87456 0.91441 0.91098 0.89568 0.89179 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.30 71.23 0.73 -0.42 16 2 C -0.03 -0.96 7.49 25.04 0.19 -0.77 16 3 O 0.08 2.85 11.20 71.59 0.80 3.65 16 4 N -0.40 -16.42 12.07 -59.25 -0.72 -17.14 16 5 C 0.00 -0.17 12.16 85.71 1.04 0.87 16 6 C -0.19 -5.87 5.84 -19.73 -0.12 -5.99 16 7 C 0.15 3.41 6.01 85.56 0.51 3.92 16 8 N -0.68 -17.85 3.28 -517.95 -1.70 -19.55 16 9 C 0.05 1.00 5.27 86.30 0.46 1.45 16 10 C 0.13 2.56 3.28 45.34 0.15 2.70 16 11 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 12 C -0.11 -1.15 6.48 31.78 0.21 -0.94 16 13 C -0.12 -1.36 7.08 31.98 0.23 -1.13 16 14 C 0.09 1.69 6.69 86.85 0.58 2.27 16 15 N -0.61 -16.03 3.07 -788.05 -2.42 -18.45 16 16 C 0.55 20.54 7.44 87.66 0.65 21.19 16 17 O -0.50 -21.78 12.00 -3.02 -0.04 -21.82 16 18 C -0.12 -5.10 5.16 71.24 0.37 -4.73 16 19 S -0.14 -7.99 20.57 -56.49 -1.16 -9.15 16 20 C -0.55 -32.79 9.50 67.95 0.65 -32.15 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 22 C 0.01 0.86 5.49 84.86 0.47 1.32 16 23 N -0.91 -58.44 13.22 21.65 0.29 -58.15 16 24 Si 1.00 45.45 29.55 68.60 2.03 47.48 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.47 7.48 -2.38 -0.02 1.46 16 31 H 0.19 6.35 8.06 -2.91 -0.02 6.32 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.35 9.94 6.83 -89.69 -0.61 9.33 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.31 8.07 -2.39 -0.02 1.30 16 37 H 0.09 0.72 7.81 -2.38 -0.02 0.71 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 40 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.38 7.48 -2.39 -0.02 1.37 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.09 3.62 7.85 -2.39 -0.02 3.60 16 45 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -83.81 383.73 3.58 -80.22 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.39 Total: 25.30 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 6.11 Total: -12.39 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -4.54 Total: -113.29 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.77 Total: -18.17 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -83.81 3.58 -80.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324117045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.368 kcal (2) G-P(sol) polarization free energy of solvation -83.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds