Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30172 * 126.80203 * 2 1 4 4 O 1.20924 * 111.60334 * 179.97438 * 3 2 1 5 5 C 1.34036 * 111.56970 * 359.76124 * 4 3 2 6 6 C 1.35452 * 106.44605 * 0.38239 * 5 4 3 7 7 C 1.50700 * 128.00946 * 179.91206 * 6 5 4 8 8 N 1.46897 * 109.47207 * 259.67731 * 7 6 5 9 9 C 1.46897 * 111.00403 * 180.02562 * 8 7 6 10 10 H 1.09006 * 110.91577 * 37.44130 * 9 8 7 11 11 C 1.55149 * 111.00731 * 161.35024 * 9 8 7 12 12 C 1.54336 * 103.01966 * 153.38211 * 11 9 8 13 13 H 1.09004 * 109.98992 * 218.65935 * 12 11 9 14 14 C 1.53002 * 109.78276 * 97.49756 * 12 11 9 15 15 N 1.47020 * 107.26772 * 338.13837 * 12 11 9 16 16 C 1.34777 * 125.64991 * 178.85471 * 15 12 11 17 17 O 1.21283 * 119.99750 * 359.71166 * 16 15 12 18 18 C 1.50702 * 119.99928 * 179.97438 * 16 15 12 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47035 * 59.99524 * 24 22 20 26 26 H 1.48499 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46580 * 299.99884 * 24 22 20 28 28 C 1.47424 * 108.70071 * 358.58770 * 15 12 11 29 29 H 1.08998 * 109.47453 * 270.02755 * 1 2 3 30 30 H 1.08997 * 109.47313 * 30.02469 * 1 2 3 31 31 H 1.09001 * 109.47471 * 150.02588 * 1 2 3 32 32 H 1.08000 * 126.78059 * 180.28239 * 5 4 3 33 33 H 1.09002 * 109.47070 * 139.67430 * 7 6 5 34 34 H 1.08999 * 109.47063 * 19.67501 * 7 6 5 35 35 H 1.00899 * 111.00206 * 56.04582 * 8 7 6 36 36 H 1.09001 * 110.71964 * 271.93419 * 11 9 8 37 37 H 1.08994 * 110.72431 * 35.03316 * 11 9 8 38 38 H 1.09003 * 109.46705 * 300.80732 * 14 12 11 39 39 H 1.08996 * 109.47048 * 60.80045 * 14 12 11 40 40 H 1.08999 * 109.47501 * 180.80771 * 14 12 11 41 41 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 42 42 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 43 43 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.36793 * 143.19471 * 28 15 12 45 45 H 1.09004 * 110.36721 * 265.41008 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6068 0.0061 6 6 2.3539 -1.1321 0.0006 7 6 1.9590 -2.5864 0.0016 8 7 1.5984 -2.9969 -1.3620 9 6 1.2064 -4.4121 -1.3996 10 1 0.6441 -4.6840 -0.5062 11 6 0.3977 -4.7313 -2.6845 12 6 0.6733 -6.2338 -2.9046 13 1 0.7891 -6.4394 -3.9688 14 6 -0.4808 -7.0609 -2.3346 15 7 1.9191 -6.5576 -2.1942 16 6 2.4896 -7.7767 -2.1246 17 8 1.9670 -8.7229 -2.6746 18 6 3.7736 -7.9651 -1.3585 19 16 4.2779 -9.7013 -1.4441 20 6 5.7607 -9.6363 -0.4946 21 1 6.0891 -8.6994 -0.0694 22 6 6.5062 -10.7894 -0.2920 23 7 6.1052 -11.9316 -0.8089 24 14 8.0779 -10.7207 0.7153 25 1 7.7655 -10.2496 2.0884 26 1 8.6829 -12.0752 0.7817 27 1 9.0349 -9.7824 0.0758 28 6 2.4443 -5.3266 -1.5760 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.5338 -1.1534 0.0120 33 1 1.1042 -2.7303 0.6624 34 1 2.7958 -3.1899 0.3533 35 1 2.3528 -2.8131 -2.0063 36 1 -0.6656 -4.5512 -2.5257 37 1 0.7649 -4.1453 -3.5270 38 1 -0.5850 -6.8536 -1.2695 39 1 -1.4053 -6.7970 -2.8482 40 1 -0.2743 -8.1213 -2.4798 41 1 4.5519 -7.3387 -1.7943 42 1 3.6201 -7.6822 -0.3172 43 1 6.6264 -12.7375 -0.6677 44 1 2.8923 -5.5497 -0.6077 45 1 3.1760 -4.8549 -2.2321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331962023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = 27.464912 kcal Electronic energy + Delta-G solvation = -26542.731446 eV Core-core repulsion = 22689.765500 eV Total energy + Delta-G solvation = -3852.965947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.26086 -40.22827 -37.95169 -36.30751 -34.49285 -32.47105 -32.39987 -32.18946 -29.73225 -28.95967 -28.73969 -26.09666 -25.79335 -25.50830 -22.56816 -21.85145 -21.63139 -20.95341 -19.04047 -17.91745 -17.86148 -17.74013 -16.78879 -16.46882 -15.94182 -15.17284 -14.85176 -14.82167 -14.59529 -14.51110 -14.06827 -13.98724 -13.63648 -13.40169 -13.32913 -13.12458 -13.00376 -12.82003 -12.65921 -12.52056 -12.40396 -12.08820 -11.83545 -11.66057 -11.40427 -11.13288 -11.07523 -11.06677 -10.80419 -10.79699 -10.20002 -9.89704 -9.86504 -9.43651 -9.09742 -8.91873 -8.55283 -8.28213 -6.54560 -6.25203 -3.96388 1.12160 1.82309 2.82634 2.90608 3.01840 3.20004 3.21555 3.25791 3.50342 3.71712 3.91940 4.15873 4.16601 4.28540 4.35114 4.42395 4.69869 4.73314 4.94023 4.99486 5.05940 5.07322 5.09729 5.12411 5.17827 5.21521 5.31024 5.37577 5.43137 5.49680 5.50879 5.56541 5.60649 5.66990 5.75515 5.81079 5.82869 6.04023 6.06729 6.26960 6.47146 6.53906 6.83340 7.54799 7.63010 7.93876 8.30762 8.52697 9.19723 10.82123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.002520 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.813633 B =11110.245893 C =13342.592355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 N -0.371 5.371 4 O 0.096 5.904 5 C -0.051 4.051 6 C -0.200 4.200 7 C 0.133 3.867 8 N -0.670 5.670 9 C 0.077 3.923 10 H 0.098 0.902 11 C -0.114 4.114 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.163 4.163 15 N -0.619 5.619 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 C 0.073 3.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.216 0.784 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.346 0.654 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 23.447 0.903 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 N -0.078 5.078 4 O 0.033 5.967 5 C -0.133 4.133 6 C -0.204 4.204 7 C 0.004 3.996 8 N -0.301 5.301 9 C -0.034 4.034 10 H 0.116 0.884 11 C -0.152 4.152 12 C 0.031 3.969 13 H 0.092 0.908 14 C -0.221 4.221 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.385 6.385 18 C -0.297 4.297 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.053 4.053 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.479 23.305 0.117 26.436 hybrid contribution 2.680 -0.132 1.420 3.036 sum -9.799 23.173 1.537 25.206 Atomic orbital electron populations 1.20189 0.85856 1.04254 1.03144 1.23514 0.99111 0.88091 1.01556 1.73873 0.89445 1.24329 1.20130 1.84837 1.21633 1.22903 1.67367 1.25908 1.00801 0.83857 1.02770 1.21159 0.92130 0.97396 1.09729 1.20160 1.00507 0.87788 0.91121 1.60550 1.44798 1.17614 1.07102 1.22797 0.95142 0.85743 0.99705 0.88398 1.22692 1.01195 0.93901 0.97451 1.21529 0.84649 0.93916 0.96793 0.90759 1.22154 0.96944 1.02264 1.00784 1.48479 1.25041 1.07719 1.54500 1.20011 0.85426 0.80588 0.80247 1.90697 1.63570 1.38796 1.45406 1.23511 0.96383 1.08080 1.01764 1.85413 1.29475 0.98352 1.69985 1.22800 1.09715 0.97741 1.38199 0.91067 1.24991 0.98222 0.94517 0.95813 1.70006 1.38571 0.99233 1.42394 0.86227 0.81701 0.77512 0.80081 1.19935 1.20762 1.19938 1.23038 0.97140 0.86532 0.98600 0.90476 0.90781 0.89089 0.76775 0.89262 0.93150 0.83435 0.89554 0.90283 0.92684 0.91985 0.90691 0.89526 0.89525 0.92082 0.90558 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.39 36.00 0.37 -0.11 16 2 C 0.04 0.32 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -3.85 12.07 33.42 0.40 -3.45 16 4 O 0.10 0.86 11.20 17.19 0.19 1.06 16 5 C -0.05 -0.32 12.26 29.74 0.36 0.04 16 6 C -0.20 -1.40 5.84 -104.42 -0.61 -2.01 16 7 C 0.13 0.77 6.04 -4.98 -0.03 0.74 16 8 N -0.67 -4.07 6.36 -105.73 -0.67 -4.75 16 9 C 0.08 0.55 3.32 -65.57 -0.22 0.34 16 10 H 0.10 0.72 7.92 -51.93 -0.41 0.30 16 11 C -0.11 -0.87 6.18 -24.89 -0.15 -1.03 16 12 C 0.13 1.52 3.51 -66.95 -0.23 1.28 16 13 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.16 -1.88 9.05 37.16 0.34 -1.54 16 15 N -0.62 -8.37 3.08 -163.01 -0.50 -8.87 16 16 C 0.55 10.24 7.65 -10.98 -0.08 10.16 16 17 O -0.51 -11.47 14.75 5.55 0.08 -11.39 16 18 C -0.15 -2.94 5.16 36.01 0.19 -2.75 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.07 0.69 6.27 -2.53 -0.02 0.68 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.35 2.03 8.30 -39.29 -0.33 1.71 16 36 H 0.09 0.58 7.83 -51.93 -0.41 0.17 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.13 6.74 -51.93 -0.35 0.78 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.60 7.84 -51.92 -0.41 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 0.73 7.47 -51.93 -0.39 0.34 16 45 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -34.96 389.57 -8.50 -43.46 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.89 Total: -1.76 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.49 Total: -7.27 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.04 Total: -42.24 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.27 Total: -10.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.96 -8.50 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.925 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds