Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30172 * 126.80203 * 2 1 4 4 O 1.20924 * 111.60334 * 179.97438 * 3 2 1 5 5 C 1.34036 * 111.56970 * 359.76124 * 4 3 2 6 6 C 1.35452 * 106.44605 * 0.38239 * 5 4 3 7 7 C 1.50700 * 128.00946 * 179.91206 * 6 5 4 8 8 N 1.46897 * 109.47207 * 259.67731 * 7 6 5 9 9 C 1.46897 * 111.00403 * 180.02562 * 8 7 6 10 10 H 1.09006 * 110.91577 * 37.44130 * 9 8 7 11 11 C 1.55149 * 111.00731 * 161.35024 * 9 8 7 12 12 C 1.54336 * 103.01966 * 153.38211 * 11 9 8 13 13 H 1.09004 * 109.98992 * 218.65935 * 12 11 9 14 14 C 1.53002 * 109.78276 * 97.49756 * 12 11 9 15 15 N 1.47020 * 107.26772 * 338.13837 * 12 11 9 16 16 C 1.34777 * 125.64991 * 178.85471 * 15 12 11 17 17 O 1.21283 * 119.99750 * 359.71166 * 16 15 12 18 18 C 1.50702 * 119.99928 * 179.97438 * 16 15 12 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47035 * 59.99524 * 24 22 20 26 26 H 1.48499 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46580 * 299.99884 * 24 22 20 28 28 C 1.47424 * 108.70071 * 358.58770 * 15 12 11 29 29 H 1.08998 * 109.47453 * 270.02755 * 1 2 3 30 30 H 1.08997 * 109.47313 * 30.02469 * 1 2 3 31 31 H 1.09001 * 109.47471 * 150.02588 * 1 2 3 32 32 H 1.08000 * 126.78059 * 180.28239 * 5 4 3 33 33 H 1.09002 * 109.47070 * 139.67430 * 7 6 5 34 34 H 1.08999 * 109.47063 * 19.67501 * 7 6 5 35 35 H 1.00899 * 111.00206 * 56.04582 * 8 7 6 36 36 H 1.09001 * 110.71964 * 271.93419 * 11 9 8 37 37 H 1.08994 * 110.72431 * 35.03316 * 11 9 8 38 38 H 1.09003 * 109.46705 * 300.80732 * 14 12 11 39 39 H 1.08996 * 109.47048 * 60.80045 * 14 12 11 40 40 H 1.08999 * 109.47501 * 180.80771 * 14 12 11 41 41 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 42 42 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 43 43 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.36793 * 143.19471 * 28 15 12 45 45 H 1.09004 * 110.36721 * 265.41008 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6068 0.0061 6 6 2.3539 -1.1321 0.0006 7 6 1.9590 -2.5864 0.0016 8 7 1.5984 -2.9969 -1.3620 9 6 1.2064 -4.4121 -1.3996 10 1 0.6441 -4.6840 -0.5062 11 6 0.3977 -4.7313 -2.6845 12 6 0.6733 -6.2338 -2.9046 13 1 0.7891 -6.4394 -3.9688 14 6 -0.4808 -7.0609 -2.3346 15 7 1.9191 -6.5576 -2.1942 16 6 2.4896 -7.7767 -2.1246 17 8 1.9670 -8.7229 -2.6746 18 6 3.7736 -7.9651 -1.3585 19 16 4.2779 -9.7013 -1.4441 20 6 5.7607 -9.6363 -0.4946 21 1 6.0891 -8.6994 -0.0694 22 6 6.5062 -10.7894 -0.2920 23 7 6.1052 -11.9316 -0.8089 24 14 8.0779 -10.7207 0.7153 25 1 7.7655 -10.2496 2.0884 26 1 8.6829 -12.0752 0.7817 27 1 9.0349 -9.7824 0.0758 28 6 2.4443 -5.3266 -1.5760 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.5338 -1.1534 0.0120 33 1 1.1042 -2.7303 0.6624 34 1 2.7958 -3.1899 0.3533 35 1 2.3528 -2.8131 -2.0063 36 1 -0.6656 -4.5512 -2.5257 37 1 0.7649 -4.1453 -3.5270 38 1 -0.5850 -6.8536 -1.2695 39 1 -1.4053 -6.7970 -2.8482 40 1 -0.2743 -8.1213 -2.4798 41 1 4.5519 -7.3387 -1.7943 42 1 3.6201 -7.6822 -0.3172 43 1 6.6264 -12.7375 -0.6677 44 1 2.8923 -5.5497 -0.6077 45 1 3.1760 -4.8549 -2.2321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331962023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = 3.226603 kcal Electronic energy + Delta-G solvation = -26543.782498 eV Core-core repulsion = 22689.765500 eV Total energy + Delta-G solvation = -3854.016999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.84471 -41.29557 -39.03590 -37.02731 -35.13593 -34.59360 -33.38782 -32.93577 -30.50179 -30.14744 -29.46685 -27.67427 -26.82250 -26.46075 -23.54303 -22.39791 -22.14006 -21.73716 -20.34589 -19.54851 -18.52516 -18.44163 -18.00446 -17.28087 -16.93785 -16.88200 -16.31218 -16.00543 -15.69474 -15.21371 -14.99896 -14.79816 -14.58516 -14.35171 -14.22033 -14.08529 -13.98654 -13.75980 -13.55603 -13.31875 -13.18326 -13.10694 -13.05335 -12.86721 -12.81596 -12.60988 -12.38410 -12.01811 -11.86045 -11.75431 -11.55959 -11.13576 -10.88690 -10.76446 -10.42817 -10.29396 -9.74974 -9.39360 -8.69067 -8.35227 -6.14186 0.61288 1.22790 1.27122 1.43516 1.44773 1.54435 1.57812 2.06755 2.26691 2.45367 2.98843 3.07155 3.27073 3.37582 3.55805 3.64808 3.70450 3.90076 3.97973 4.08407 4.14821 4.23918 4.25218 4.31493 4.39625 4.44910 4.60229 4.64661 4.67327 4.73864 4.74349 4.81319 4.83099 4.94289 5.00455 5.07353 5.08833 5.16690 5.33462 5.34288 5.40090 5.53272 5.96436 6.18408 6.35324 6.42799 7.05640 7.14566 7.39230 8.73724 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.002520 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.813633 B =11110.245893 C =13342.592355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.026 3.974 3 N -0.409 5.409 4 O 0.079 5.921 5 C -0.042 4.042 6 C -0.207 4.207 7 C 0.137 3.863 8 N -0.664 5.664 9 C 0.093 3.907 10 H 0.104 0.896 11 C -0.100 4.100 12 C 0.128 3.872 13 H 0.062 0.938 14 C -0.159 4.159 15 N -0.610 5.610 16 C 0.545 3.455 17 O -0.562 6.562 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.261 1.261 28 C 0.063 3.937 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.351 0.649 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 25.877 2.038 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 N -0.118 5.118 4 O 0.019 5.981 5 C -0.124 4.124 6 C -0.212 4.212 7 C 0.008 3.992 8 N -0.295 5.295 9 C -0.018 4.018 10 H 0.122 0.878 11 C -0.138 4.138 12 C 0.025 3.975 13 H 0.080 0.920 14 C -0.217 4.217 15 N -0.345 5.345 16 C 0.333 3.667 17 O -0.440 6.440 18 C -0.270 4.270 19 S 0.076 5.924 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.061 4.061 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.266 0.734 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.050 25.812 1.256 28.513 hybrid contribution 2.461 -0.777 1.028 2.778 sum -9.589 25.035 2.284 26.906 Atomic orbital electron populations 1.20250 0.84725 1.04499 1.03803 1.23986 1.00114 0.88411 1.00804 1.73875 0.90140 1.25671 1.22121 1.84791 1.21271 1.24318 1.67766 1.26591 1.02050 0.82923 1.00804 1.21314 0.92058 0.97625 1.10187 1.20176 1.01134 0.87006 0.90849 1.60531 1.45174 1.16294 1.07520 1.22652 0.93735 0.85774 0.99638 0.87811 1.22632 1.02488 0.90620 0.98069 1.21767 0.83386 0.96547 0.95815 0.91999 1.22104 0.98279 0.99648 1.01638 1.48405 1.25362 1.07213 1.53509 1.19759 0.85091 0.81778 0.80063 1.90682 1.64703 1.40950 1.47641 1.23299 0.97659 1.02641 1.03387 1.85620 1.30570 1.05598 1.70650 1.23141 1.09660 0.98455 1.38061 0.89885 1.26143 1.02173 0.93910 0.96943 1.70181 1.40352 1.00139 1.44105 0.85002 0.76673 0.77785 0.78539 1.18528 1.20499 1.18581 1.23423 0.98756 0.85128 0.98814 0.89577 0.91116 0.88188 0.73447 0.88838 0.92061 0.82961 0.87702 0.89304 0.91998 0.89357 0.94900 0.87867 0.87709 0.91986 0.90100 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.39 71.23 0.74 -0.08 16 2 C 0.03 0.40 7.33 43.58 0.32 0.72 16 3 N -0.41 -8.16 12.07 -49.56 -0.60 -8.75 16 4 O 0.08 1.33 11.20 71.67 0.80 2.13 16 5 C -0.04 -0.42 12.26 67.18 0.82 0.41 16 6 C -0.21 -2.35 5.84 -19.73 -0.12 -2.47 16 7 C 0.14 1.08 6.04 85.56 0.52 1.60 16 8 N -0.66 -5.45 6.36 -488.42 -3.11 -8.56 16 9 C 0.09 0.98 3.32 46.31 0.15 1.14 16 10 H 0.10 1.07 7.92 -2.38 -0.02 1.05 16 11 C -0.10 -1.17 6.18 31.78 0.20 -0.97 16 12 C 0.13 2.67 3.51 45.35 0.16 2.83 16 13 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 14 C -0.16 -3.51 9.05 71.98 0.65 -2.85 16 15 N -0.61 -15.58 3.08 -788.02 -2.43 -18.00 16 16 C 0.55 20.40 7.65 87.66 0.67 21.07 16 17 O -0.56 -26.29 14.75 -3.04 -0.04 -26.33 16 18 C -0.12 -4.69 5.16 71.24 0.37 -4.32 16 19 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 20 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 24 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 28 C 0.06 1.00 6.27 86.86 0.54 1.55 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.25 0.42 8.06 -2.91 -0.02 0.39 16 33 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.35 2.68 8.30 -89.69 -0.74 1.94 16 36 H 0.10 0.95 7.83 -2.39 -0.02 0.93 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.03 1.01 6.74 -2.39 -0.02 0.99 16 41 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.10 3.73 7.84 -2.40 -0.02 3.71 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.08 1.26 7.47 -2.39 -0.02 1.24 16 45 H 0.08 1.11 7.81 -2.38 -0.02 1.10 16 Total: -1.00 -80.40 389.57 2.17 -78.23 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.26 Total: 11.68 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 6.14 Total: -10.27 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -5.85 Total: -90.72 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.76 Total: -24.20 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -80.40 2.17 -78.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.452 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds