Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30175 * 126.80645 * 2 1 4 4 O 1.20922 * 111.60287 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.57227 * 359.76446 * 4 3 2 6 6 C 1.35456 * 106.44226 * 0.37986 * 5 4 3 7 7 C 1.50703 * 128.00526 * 179.91191 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.67616 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08999 * 110.63677 * 36.69332 * 9 8 7 11 11 C 1.55154 * 110.71785 * 160.02316 * 9 8 7 12 12 C 1.54909 * 101.57823 * 153.86665 * 11 9 8 13 13 H 1.08998 * 110.36692 * 81.83399 * 12 11 9 14 14 C 1.53005 * 110.46135 * 204.10428 * 12 11 9 15 15 N 1.47418 * 104.83337 * 322.99133 * 12 11 9 16 16 C 1.34784 * 125.64651 * 204.16274 * 15 12 11 17 17 O 1.21275 * 119.99813 * 359.97438 * 16 15 12 18 18 C 1.50704 * 119.99553 * 179.97438 * 16 15 12 19 19 S 1.81000 * 109.46770 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00033 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99987 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99982 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00438 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99624 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47396 * 59.99789 * 24 22 20 26 26 H 1.48504 * 109.46797 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47158 * 299.99200 * 24 22 20 28 28 C 1.47023 * 108.70320 * 24.12942 * 15 12 11 29 29 H 1.08999 * 109.46959 * 270.02413 * 1 2 3 30 30 H 1.08997 * 109.46407 * 30.02156 * 1 2 3 31 31 H 1.08990 * 109.47315 * 150.01941 * 1 2 3 32 32 H 1.07996 * 126.78345 * 180.28328 * 5 4 3 33 33 H 1.09002 * 109.47152 * 139.67703 * 7 6 5 34 34 H 1.09001 * 109.46980 * 19.67803 * 7 6 5 35 35 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 36 36 H 1.09001 * 111.00600 * 271.94324 * 11 9 8 37 37 H 1.09004 * 111.00628 * 35.79889 * 11 9 8 38 38 H 1.08994 * 109.47563 * 176.92223 * 14 12 11 39 39 H 1.09004 * 109.47235 * 296.92429 * 14 12 11 40 40 H 1.09007 * 109.47146 * 56.91770 * 14 12 11 41 41 H 1.09001 * 109.47262 * 299.99945 * 18 16 15 42 42 H 1.08999 * 109.47005 * 60.00110 * 18 16 15 43 43 H 0.96991 * 120.00435 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.87713 * 239.51822 * 28 15 12 45 45 H 1.08998 * 110.00999 * 118.42913 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7251 0.0005 5 6 3.6025 -0.6070 0.0060 6 6 2.3539 -1.1321 0.0005 7 6 1.9589 -2.5865 0.0015 8 7 1.5983 -2.9968 -1.3621 9 6 1.2074 -4.4124 -1.3999 10 1 0.6575 -4.6833 -0.4987 11 6 0.3708 -4.7171 -2.6705 12 6 0.6538 -6.2264 -2.8746 13 1 0.0113 -6.8237 -2.2277 14 6 0.4436 -6.6167 -4.3390 15 7 2.0677 -6.3999 -2.4952 16 6 2.8796 -7.3880 -2.9208 17 8 2.4588 -8.2329 -3.6824 18 6 4.3102 -7.4429 -2.4502 19 16 5.1344 -8.8740 -3.1910 20 6 6.7414 -8.6984 -2.4899 21 1 6.9517 -7.8774 -1.8204 22 6 7.7369 -9.6151 -2.7981 23 7 7.4806 -10.6159 -3.6137 24 14 9.4404 -9.4292 -2.0542 25 1 9.3432 -9.4892 -0.5737 26 1 10.3141 -10.5285 -2.5374 27 1 10.0178 -8.1227 -2.4599 28 6 2.4457 -5.3162 -1.5764 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 4.5338 -1.1537 0.0120 33 1 1.1041 -2.7304 0.6623 34 1 2.7957 -3.1900 0.3532 35 1 0.8675 -2.4095 -1.7352 36 1 -0.6897 -4.5390 -2.4921 37 1 0.7255 -4.1346 -3.5209 38 1 0.6993 -7.6674 -4.4753 39 1 -0.6000 -6.4585 -4.6111 40 1 1.0818 -6.0021 -4.9741 41 1 4.8264 -6.5307 -2.7495 42 1 4.3322 -7.5333 -1.3642 43 1 8.1762 -11.2567 -3.8288 44 1 3.2678 -4.7401 -2.0011 45 1 2.7425 -5.7306 -0.6129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331962025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 6.476945 kcal Electronic energy + Delta-G solvation = -26555.466943 eV Core-core repulsion = 22701.590890 eV Total energy + Delta-G solvation = -3853.876053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.85267 -41.25119 -38.96865 -37.05242 -35.11190 -34.57982 -33.38935 -32.96135 -30.63647 -30.09453 -29.56552 -27.66054 -26.75909 -26.57738 -23.29282 -22.33750 -22.22796 -21.73556 -20.35492 -19.37957 -18.51860 -18.34803 -18.03502 -17.60766 -16.87561 -16.55106 -16.29470 -16.06937 -15.78035 -15.75588 -14.95367 -14.83363 -14.54288 -14.32787 -14.17735 -14.15433 -13.90645 -13.51423 -13.47804 -13.35416 -13.24080 -13.14678 -13.02368 -12.90225 -12.85099 -12.60695 -12.21520 -12.05313 -11.87630 -11.73259 -11.72496 -11.12217 -10.82244 -10.61125 -10.41550 -10.27621 -9.63265 -9.43148 -8.66765 -8.33799 -6.12219 0.60702 1.23166 1.26422 1.44517 1.46055 1.55828 1.62054 2.10949 2.28442 2.42736 3.00117 3.10133 3.26512 3.36629 3.48503 3.57427 3.63371 3.96024 4.02514 4.11570 4.14523 4.20743 4.28672 4.41831 4.42643 4.49134 4.56797 4.64492 4.66625 4.72101 4.77810 4.81610 4.84599 4.90276 4.93161 5.00053 5.00568 5.24069 5.27606 5.29954 5.41744 5.62112 6.00203 6.20081 6.39317 6.46954 7.07101 7.19754 7.35618 8.75196 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.002583 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.031109 B =10836.680100 C =13177.110916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.016 3.984 3 N -0.406 5.406 4 O 0.076 5.924 5 C -0.035 4.035 6 C -0.208 4.208 7 C 0.140 3.860 8 N -0.680 5.680 9 C 0.090 3.910 10 H 0.087 0.913 11 C -0.116 4.116 12 C 0.130 3.870 13 H 0.083 0.917 14 C -0.162 4.162 15 N -0.613 5.613 16 C 0.547 3.453 17 O -0.557 6.557 18 C -0.119 4.119 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.262 1.262 28 C 0.101 3.899 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.245 0.755 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.355 0.645 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 21.965 10.674 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 N -0.115 5.115 4 O 0.016 5.984 5 C -0.117 4.117 6 C -0.212 4.212 7 C 0.011 3.989 8 N -0.314 5.314 9 C -0.020 4.020 10 H 0.104 0.896 11 C -0.154 4.154 12 C 0.027 3.973 13 H 0.101 0.899 14 C -0.219 4.219 15 N -0.349 5.349 16 C 0.335 3.665 17 O -0.435 6.435 18 C -0.271 4.271 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.022 4.022 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.034 21.729 9.261 29.122 hybrid contribution 0.964 -0.117 1.266 1.595 sum -16.071 21.612 10.527 28.917 Atomic orbital electron populations 1.20293 0.84292 1.04555 1.04254 1.24072 1.00219 0.88468 1.01541 1.73858 0.90109 1.25707 1.21862 1.84789 1.21349 1.24382 1.67886 1.26528 1.02263 0.82671 1.00237 1.21326 0.92264 0.97502 1.10132 1.20193 1.01612 0.87491 0.89627 1.60292 1.47189 1.02325 1.21590 1.22387 0.93172 0.87717 0.98730 0.89558 1.23001 1.01867 0.92671 0.97833 1.22069 0.81093 0.97638 0.96450 0.89934 1.22089 1.02351 1.02375 0.95118 1.48463 1.12160 1.26647 1.47624 1.19672 0.86567 0.80288 0.80007 1.90640 1.76212 1.40079 1.36609 1.23309 0.95254 1.03768 1.04725 1.85545 1.09817 1.33059 1.63801 1.23149 0.96591 1.16064 1.33551 0.90001 1.26134 1.03914 0.93850 0.95246 1.70173 1.35685 1.14337 1.34575 0.85009 0.75874 0.78345 0.78809 1.18543 1.20427 1.18632 1.22264 0.99256 0.87584 0.93135 0.89167 0.90649 0.88355 0.73905 0.91804 0.88855 0.82487 0.86595 0.89992 0.92980 0.89453 0.93923 0.88174 0.87846 0.91992 0.90797 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 71.24 0.74 0.13 16 2 C 0.02 0.24 7.33 43.58 0.32 0.56 16 3 N -0.41 -8.17 12.07 -49.56 -0.60 -8.77 16 4 O 0.08 1.39 11.20 71.65 0.80 2.19 16 5 C -0.04 -0.43 12.26 67.18 0.82 0.39 16 6 C -0.21 -2.51 5.84 -19.73 -0.12 -2.62 16 7 C 0.14 1.14 6.03 85.56 0.52 1.66 16 8 N -0.68 -6.46 6.28 -489.45 -3.07 -9.53 16 9 C 0.09 0.96 3.24 46.10 0.15 1.11 16 10 H 0.09 0.63 7.89 -2.39 -0.02 0.61 16 11 C -0.12 -1.33 5.94 31.98 0.19 -1.14 16 12 C 0.13 2.68 3.76 45.47 0.17 2.85 16 13 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 14 C -0.16 -4.00 8.71 71.98 0.63 -3.37 16 15 N -0.61 -16.37 3.24 -788.17 -2.56 -18.93 16 16 C 0.55 20.91 7.65 87.66 0.67 21.58 16 17 O -0.56 -25.91 13.51 -3.02 -0.04 -25.95 16 18 C -0.12 -4.89 5.35 71.24 0.38 -4.51 16 19 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 20 C -0.55 -31.27 9.50 67.95 0.65 -30.63 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 24 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 C 0.10 1.85 6.17 86.73 0.54 2.39 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.35 7.79 -2.39 -0.02 0.33 16 32 H 0.24 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.06 0.35 8.09 -2.39 -0.02 0.33 16 34 H 0.09 0.74 8.13 -2.39 -0.02 0.72 16 35 H 0.35 2.64 8.14 -89.69 -0.73 1.91 16 36 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 1.11 8.06 -2.38 -0.02 1.09 16 38 H 0.05 1.74 5.89 -2.39 -0.01 1.72 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 44 H 0.07 1.51 8.03 -2.39 -0.02 1.49 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -81.22 388.09 2.08 -79.14 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.27 Total: 12.17 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 6.12 Total: -10.38 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.94 Total: -93.11 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.76 Total: -23.76 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.22 2.08 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.621 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds