Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30170 * 126.80610 * 2 1 4 4 O 1.20922 * 111.60679 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.56668 * 359.75532 * 4 3 2 6 6 C 1.35448 * 106.44536 * 0.38723 * 5 4 3 7 7 C 1.50702 * 128.00673 * 179.91087 * 6 5 4 8 8 N 1.46904 * 109.46891 * 259.67455 * 7 6 5 9 9 C 1.46900 * 110.99691 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.89072 * 328.87687 * 9 8 7 11 11 C 1.55156 * 111.00504 * 205.00250 * 9 8 7 12 12 C 1.54321 * 102.94454 * 206.38560 * 11 9 8 13 13 H 1.09002 * 109.88450 * 141.76033 * 12 11 9 14 14 C 1.52997 * 109.88460 * 262.77309 * 12 11 9 15 15 N 1.47023 * 107.40151 * 22.26868 * 12 11 9 16 16 C 1.34777 * 125.65125 * 180.93013 * 15 12 11 17 17 O 1.21279 * 119.99614 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00045 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99979 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46788 * 90.00277 * 24 22 20 26 26 H 1.48501 * 109.46477 * 209.99892 * 24 22 20 27 27 H 1.48491 * 109.47123 * 330.00009 * 24 22 20 28 28 C 1.47740 * 108.53362 * 0.92871 * 15 12 11 29 29 H 1.08996 * 109.47324 * 270.02895 * 1 2 3 30 30 H 1.08999 * 109.47334 * 30.02780 * 1 2 3 31 31 H 1.09003 * 109.47246 * 150.02593 * 1 2 3 32 32 H 1.08004 * 126.77474 * 180.28360 * 5 4 3 33 33 H 1.08998 * 109.47237 * 139.67389 * 7 6 5 34 34 H 1.09001 * 109.47280 * 19.67238 * 7 6 5 35 35 H 1.00893 * 111.00191 * 303.95512 * 8 7 6 36 36 H 1.08995 * 110.72466 * 88.01808 * 11 9 8 37 37 H 1.09005 * 110.86811 * 324.82004 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.68222 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.68412 * 14 12 11 40 40 H 1.09004 * 109.47261 * 179.68394 * 14 12 11 41 41 H 1.09000 * 109.47150 * 300.00028 * 18 16 15 42 42 H 1.08994 * 109.47159 * 59.99947 * 18 16 15 43 43 H 0.97000 * 119.99470 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.38561 * 217.10759 * 28 15 12 45 45 H 1.09004 * 110.38061 * 94.87238 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4537 0.7252 0.0005 5 6 3.6024 -0.6069 0.0062 6 6 2.3539 -1.1321 0.0007 7 6 1.9589 -2.5864 0.0018 8 7 1.5983 -2.9969 -1.3619 9 6 1.2075 -4.4124 -1.3995 10 1 1.7446 -4.9842 -0.6426 11 6 1.4303 -5.0136 -2.8124 12 6 0.4005 -6.1617 -2.8659 13 1 -0.0371 -6.2210 -3.8625 14 6 1.0802 -7.4871 -2.5166 15 7 -0.6456 -5.8605 -1.8777 16 6 -1.7169 -6.6324 -1.6078 17 8 -1.8783 -7.6758 -2.2046 18 6 -2.7142 -6.1991 -0.5644 19 16 -4.0273 -7.4379 -0.4337 20 6 -5.0219 -6.6986 0.8189 21 1 -4.7305 -5.7530 1.2517 22 6 -6.1798 -7.3315 1.2494 23 7 -6.5351 -8.4838 0.7215 24 14 -7.2337 -6.5480 2.5779 25 1 -8.2475 -5.6643 1.9483 26 1 -7.9187 -7.6106 3.3569 27 1 -6.3728 -5.7466 3.4842 28 6 -0.3243 -4.5711 -1.2320 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.5338 -1.1535 0.0122 33 1 1.1041 -2.7303 0.6626 34 1 2.7957 -3.1899 0.3536 35 1 0.8676 -2.4096 -1.7349 36 1 2.4445 -5.4003 -2.9115 37 1 1.2238 -4.2739 -3.5860 38 1 1.5045 -7.4248 -1.5145 39 1 1.8744 -7.6887 -3.2355 40 1 0.3460 -8.2921 -2.5509 41 1 -2.2127 -6.0988 0.3981 42 1 -3.1461 -5.2402 -0.8507 43 1 -7.3441 -8.9262 1.0226 44 1 -0.5895 -4.5993 -0.1751 45 1 -0.8470 -3.7555 -1.7319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331962026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 3.175510 kcal Electronic energy + Delta-G solvation = -26649.811002 eV Core-core repulsion = 22795.791788 eV Total energy + Delta-G solvation = -3854.019214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 8.14 seconds Orbital eigenvalues (eV) -45.86157 -41.28346 -39.04247 -37.07643 -35.11131 -34.60173 -33.36832 -32.96805 -30.52571 -30.15134 -29.57847 -27.68294 -26.84040 -26.42049 -23.54553 -22.43781 -22.23294 -21.67890 -20.34980 -19.55662 -18.53922 -18.39747 -18.01192 -17.28515 -16.93797 -16.88824 -16.27495 -15.99619 -15.82694 -15.60287 -14.85347 -14.64251 -14.38547 -14.31637 -14.20666 -14.17468 -14.15653 -13.78208 -13.51528 -13.34081 -13.29582 -13.18242 -13.06162 -12.98622 -12.89949 -12.60067 -12.33093 -11.93967 -11.88344 -11.74501 -11.56246 -11.15850 -10.90381 -10.81330 -10.42760 -10.29854 -9.75281 -9.40206 -8.69605 -8.36238 -6.14902 0.63846 1.21293 1.24689 1.41366 1.44030 1.54737 1.57223 2.05473 2.25707 2.46374 2.98006 3.07247 3.25189 3.34263 3.53943 3.62279 3.64913 3.89633 4.03037 4.07612 4.10874 4.17648 4.23852 4.30972 4.39482 4.44577 4.56606 4.61181 4.63179 4.67808 4.73041 4.80242 4.82650 4.90210 4.99592 5.00929 5.08640 5.16140 5.25779 5.33754 5.39737 5.52617 5.95754 6.17942 6.30948 6.41008 7.04908 7.13839 7.38604 8.73019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.002659 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.313133 B =10528.765795 C =12879.246571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.012 3.988 3 N -0.405 5.405 4 O 0.082 5.918 5 C -0.028 4.028 6 C -0.209 4.209 7 C 0.136 3.864 8 N -0.664 5.664 9 C 0.092 3.908 10 H 0.106 0.894 11 C -0.099 4.099 12 C 0.127 3.873 13 H 0.061 0.939 14 C -0.158 4.158 15 N -0.610 5.610 16 C 0.546 3.454 17 O -0.561 6.561 18 C -0.119 4.119 19 S -0.150 6.150 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.064 3.936 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.347 0.653 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.869 16.551 -1.912 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 N -0.114 5.114 4 O 0.020 5.980 5 C -0.110 4.110 6 C -0.214 4.214 7 C 0.008 3.992 8 N -0.295 5.295 9 C -0.020 4.020 10 H 0.124 0.876 11 C -0.137 4.137 12 C 0.024 3.976 13 H 0.079 0.921 14 C -0.216 4.216 15 N -0.345 5.345 16 C 0.334 3.666 17 O -0.439 6.439 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.060 4.060 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.271 0.729 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.918 16.049 -2.974 28.957 hybrid contribution -1.881 0.405 1.644 2.531 sum 22.037 16.454 -1.330 27.534 Atomic orbital electron populations 1.20264 0.85147 1.04339 1.04006 1.23970 0.99839 0.88914 1.01995 1.73867 0.90216 1.25552 1.21770 1.84785 1.21064 1.24561 1.67570 1.26580 1.02048 0.82485 0.99870 1.21294 0.92482 0.97227 1.10389 1.20225 1.01530 0.87854 0.89622 1.60605 1.45974 1.01917 1.21028 1.22671 0.90934 0.89804 0.98554 0.87642 1.22637 0.98732 0.95225 0.97122 1.21771 0.87692 0.96648 0.91491 0.92069 1.22104 1.00449 0.96493 1.02594 1.48466 1.22925 1.22409 1.40714 1.19734 0.81024 0.83035 0.82813 1.90681 1.75590 1.25181 1.52457 1.23303 0.98809 1.04038 1.00910 1.85605 1.23833 1.30271 1.52606 1.23172 1.11430 1.10178 1.24489 0.89953 1.26136 0.98213 0.95267 0.99518 1.70185 1.24922 1.16669 1.42981 0.84954 0.77826 0.77916 0.77302 1.19311 1.20314 1.18071 1.23444 0.98604 0.85122 0.98830 0.89622 0.90688 0.88879 0.72915 0.93026 0.87662 0.83311 0.87618 0.89415 0.91957 0.89296 0.94910 0.87760 0.87906 0.91973 0.90129 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.39 71.23 0.74 -0.23 16 2 C 0.01 0.19 7.33 43.58 0.32 0.51 16 3 N -0.41 -8.12 12.07 -49.57 -0.60 -8.72 16 4 O 0.08 1.33 11.20 71.66 0.80 2.13 16 5 C -0.03 -0.26 12.26 67.17 0.82 0.56 16 6 C -0.21 -2.37 5.84 -19.73 -0.12 -2.48 16 7 C 0.14 1.09 6.04 85.56 0.52 1.60 16 8 N -0.66 -5.82 6.40 -488.39 -3.13 -8.95 16 9 C 0.09 0.99 3.38 46.31 0.16 1.15 16 10 H 0.11 1.06 7.83 -2.39 -0.02 1.04 16 11 C -0.10 -1.19 6.19 31.78 0.20 -0.99 16 12 C 0.13 2.68 3.48 45.34 0.16 2.84 16 13 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.16 -3.49 9.06 71.98 0.65 -2.84 16 15 N -0.61 -15.81 3.09 -787.26 -2.43 -18.24 16 16 C 0.55 20.60 7.65 87.66 0.67 21.27 16 17 O -0.56 -26.35 14.77 -3.03 -0.04 -26.40 16 18 C -0.12 -4.77 5.18 71.24 0.37 -4.41 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 20 C -0.54 -30.90 9.50 67.96 0.65 -30.26 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 24 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 28 C 0.06 1.06 6.31 86.79 0.55 1.61 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.81 7.79 -2.39 -0.02 0.79 16 32 H 0.25 0.01 8.06 -2.91 -0.02 -0.02 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.54 8.09 -2.39 -0.02 0.52 16 35 H 0.35 3.14 7.83 -89.70 -0.70 2.43 16 36 H 0.11 0.95 7.83 -2.39 -0.02 0.93 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 1.00 6.76 -2.38 -0.02 0.99 16 41 H 0.10 3.77 7.86 -2.40 -0.02 3.75 16 42 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.08 1.31 7.51 -2.39 -0.02 1.29 16 45 H 0.08 1.17 7.75 -2.39 -0.02 1.15 16 Total: -1.00 -80.89 388.83 2.20 -78.69 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.30 Total: 11.83 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 6.15 Total: -10.44 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -5.87 Total: -91.47 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.76 Total: -24.27 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.89 2.20 -78.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.868 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.14 seconds