Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47089 * 260.72979 * 3 2 1 5 5 H 1.08994 * 109.47201 * 305.00145 * 4 3 2 6 6 O 1.45197 * 109.47034 * 65.00126 * 4 3 2 7 7 C 1.34752 * 117.00160 * 269.99765 * 6 4 3 8 8 O 1.21524 * 119.99620 * 0.02562 * 7 6 4 9 9 C 1.47281 * 120.00314 * 180.02562 * 7 6 4 10 10 C 1.41349 * 126.42601 * 359.68510 * 9 7 6 11 11 N 1.30430 * 108.01335 * 179.85937 * 10 9 7 12 12 N 1.39934 * 108.91935 * 0.40539 * 11 10 9 13 13 C 1.46495 * 125.74563 * 179.73756 * 12 11 10 14 14 C 1.50698 * 109.47410 * 270.00424 * 13 12 11 15 15 H 1.08005 * 119.99708 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00705 * 179.97438 * 14 13 12 17 17 N 1.31525 * 119.99423 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00430 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47290 * 89.99764 * 18 16 14 20 20 H 1.48503 * 109.47375 * 209.99996 * 18 16 14 21 21 H 1.48502 * 109.47400 * 330.00174 * 18 16 14 22 22 C 1.34227 * 108.51209 * 359.74295 * 12 11 10 23 23 C 1.50694 * 126.29499 * 180.02562 * 22 12 11 24 24 C 1.50706 * 109.46818 * 185.00150 * 4 3 2 25 25 C 1.38227 * 119.61686 * 125.02645 * 24 4 3 26 26 C 1.38627 * 119.15663 * 179.70253 * 25 24 4 27 27 C 1.38669 * 118.42388 * 0.51169 * 26 25 24 28 28 C 1.38186 * 119.16143 * 359.50231 * 27 26 25 29 29 N 1.31856 * 119.61480 * 304.99563 * 24 4 3 30 30 H 4.44647 * 5.63338 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.46845 * 140.72734 * 3 2 1 32 32 H 1.09009 * 109.46934 * 20.72827 * 3 2 1 33 33 H 1.07997 * 125.99359 * 0.02562 * 10 9 7 34 34 H 1.09005 * 109.47319 * 30.00011 * 13 12 11 35 35 H 1.09003 * 109.47674 * 150.00212 * 13 12 11 36 36 H 0.96992 * 119.99324 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.46647 * 269.96985 * 23 22 12 38 38 H 1.09000 * 109.47580 * 29.96363 * 23 22 12 39 39 H 1.08999 * 109.47664 * 149.97284 * 23 22 12 40 40 H 1.07997 * 120.41943 * 359.97438 * 25 24 4 41 41 H 1.08008 * 120.78691 * 180.26734 * 26 25 24 42 42 H 1.08002 * 120.42244 * 179.78749 * 27 26 25 43 43 H 1.07996 * 119.61757 * 180.25243 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2333 1.4237 5 1 2.7209 1.1506 1.8200 6 8 2.7723 -0.8868 2.2642 7 6 1.5845 -0.8000 2.8946 8 8 0.8881 0.1847 2.7456 9 6 1.1303 -1.8985 3.7642 10 6 1.8237 -3.1016 4.0282 11 7 1.0985 -3.8142 4.8451 12 7 -0.0803 -3.1166 5.1316 13 6 -1.1592 -3.5822 6.0064 14 6 -2.1642 -4.3585 5.1950 15 1 -2.0144 -4.4914 4.1337 16 6 -3.2749 -4.8992 5.8074 17 7 -3.4570 -4.7378 7.0999 18 14 -4.5209 -5.8608 4.8015 19 1 -4.1400 -7.2960 4.7824 20 1 -5.8676 -5.7141 5.4100 21 1 -4.5458 -5.3369 3.4122 22 6 -0.0560 -1.9490 4.4699 23 6 -1.1259 -0.8881 4.4933 24 6 4.6578 0.3565 1.4054 25 6 5.2581 1.4757 1.9511 26 6 6.6406 1.5763 1.9347 27 6 7.3704 0.5479 1.3580 28 6 6.7007 -0.5403 0.8318 29 7 5.3840 -0.6049 0.8696 30 1 -1.0500 0.0002 -0.0001 31 1 3.0089 0.7964 -0.6505 32 1 3.0098 -0.9604 -0.3638 33 1 2.7865 -3.3805 3.6263 34 1 -0.7452 -4.2250 6.7833 35 1 -1.6491 -2.7245 6.4673 36 1 -4.2382 -5.1185 7.5308 37 1 -1.8434 -1.0779 3.6949 38 1 -1.6385 -0.9100 5.4551 39 1 -0.6700 0.0911 4.3468 40 1 4.6578 2.2597 2.3885 41 1 7.1373 2.4371 2.3576 42 1 8.4489 0.5945 1.3247 43 1 7.2620 -1.3473 0.3846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341861031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = 75.924846 kcal Electronic energy + Delta-G solvation = -28149.393764 eV Core-core repulsion = 24163.085246 eV Total energy + Delta-G solvation = -3986.308518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95463 -40.59905 -39.49474 -36.37321 -34.29990 -33.86561 -32.80266 -32.30672 -32.09439 -31.19290 -29.45499 -27.61938 -26.73070 -25.23597 -23.88759 -23.60313 -22.62075 -21.44823 -20.17702 -18.93141 -18.17224 -17.49115 -17.28781 -16.82031 -16.59226 -16.09922 -15.84822 -15.50424 -15.01282 -14.57598 -14.36169 -14.34643 -14.05341 -13.78578 -13.54342 -13.36030 -13.02934 -12.90674 -12.59689 -12.49977 -12.19124 -12.12424 -11.80750 -11.60479 -11.51034 -11.14742 -11.09232 -10.89437 -10.42172 -10.30635 -10.20729 -10.04357 -9.96341 -9.92334 -9.81242 -9.50004 -9.37089 -8.71911 -8.61252 -8.02232 -6.34736 -4.42538 0.67207 0.95629 1.97991 2.73848 2.80229 2.98126 3.06138 3.18210 3.24606 3.27653 3.39582 3.63604 3.72304 3.92611 4.23766 4.28614 4.52206 4.62141 4.71983 4.75850 4.96486 5.00273 5.04016 5.18072 5.19681 5.21520 5.37562 5.44452 5.56244 5.69872 5.72702 5.81777 5.84429 6.02386 6.06168 6.15570 6.33625 6.37922 6.41765 6.75868 6.82582 6.89007 7.16902 7.54075 7.68269 7.73874 7.76004 7.84972 8.24687 8.39461 8.63006 9.24446 10.73556 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002560 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.443573 B =10933.217731 C =11501.187040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.202 4.202 3 C -0.014 4.014 4 C 0.152 3.848 5 H 0.102 0.898 6 O -0.338 6.338 7 C 0.550 3.450 8 O -0.519 6.519 9 C -0.315 4.315 10 C 0.080 3.920 11 N -0.298 5.298 12 N -0.311 5.311 13 C 0.251 3.749 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.068 3.932 17 N -0.890 5.890 18 Si 0.908 3.092 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.171 3.829 23 C -0.094 4.094 24 C 0.128 3.872 25 C -0.153 4.153 26 C -0.076 4.076 27 C -0.169 4.169 28 C 0.100 3.900 29 N -0.457 5.457 30 H 0.214 0.786 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.676 14.034 -11.381 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C -0.051 4.051 4 C 0.096 3.904 5 H 0.120 0.880 6 O -0.255 6.255 7 C 0.397 3.603 8 O -0.409 6.409 9 C -0.329 4.329 10 C -0.107 4.107 11 N -0.117 5.117 12 N -0.088 5.088 13 C 0.134 3.866 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.034 3.966 23 C -0.152 4.152 24 C -0.010 4.010 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.189 4.189 28 C -0.057 4.057 29 N -0.166 5.166 30 H 0.231 0.769 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.201 0.799 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.738 12.368 -10.837 23.464 hybrid contribution -0.301 0.879 -0.537 1.073 sum 16.437 13.246 -11.373 23.979 Atomic orbital electron populations 1.24757 0.95789 1.00034 0.98627 1.22566 0.94034 1.01433 1.02208 1.18957 0.85777 1.04701 0.95692 1.21219 0.88136 0.90798 0.90275 0.88016 1.86696 1.37663 1.43730 1.57362 1.20043 0.78274 0.85405 0.76610 1.90758 1.54905 1.32753 1.62460 1.18809 1.00056 0.99211 1.14778 1.23924 0.99455 0.91432 0.95874 1.77214 0.94752 1.20260 1.19479 1.49407 1.15020 1.10894 1.33430 1.19887 0.81152 0.96928 0.88653 1.21245 1.05923 1.35136 0.95549 0.91610 1.24923 0.97789 0.95778 0.95147 1.69916 1.29158 1.44455 1.09167 0.86316 0.79855 0.80224 0.80104 1.20205 1.20780 1.19577 1.21419 0.94781 0.89104 0.91343 1.20600 0.95414 0.95617 1.03590 1.20796 0.94519 0.90656 0.95066 1.21987 0.95766 0.99400 1.00166 1.21587 0.93653 0.98649 0.96284 1.22231 1.01597 0.95325 0.99699 1.22840 0.89952 0.97051 0.95892 1.67470 1.07465 1.27329 1.14334 0.76943 0.88677 0.87816 0.79935 0.92357 0.92492 0.92092 0.89609 0.90594 0.88873 0.84412 0.84497 0.84592 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 18.31 29.55 0.54 -1.97 16 2 C -0.20 -2.93 11.24 -37.12 -0.42 -3.35 16 3 C -0.01 -0.18 5.23 -29.52 -0.15 -0.33 16 4 C 0.15 1.93 2.57 -27.88 -0.07 1.86 16 5 H 0.10 1.27 6.89 -51.93 -0.36 0.92 16 6 O -0.34 -5.35 9.67 -40.63 -0.39 -5.75 16 7 C 0.55 9.74 7.20 34.41 0.25 9.99 16 8 O -0.52 -9.37 11.87 -19.29 -0.23 -9.60 16 9 C -0.32 -6.13 6.13 -105.08 -0.64 -6.77 16 10 C 0.08 1.55 11.87 -16.96 -0.20 1.35 16 11 N -0.30 -6.66 12.50 30.87 0.39 -6.28 16 12 N -0.31 -7.13 3.56 -57.76 -0.21 -7.34 16 13 C 0.25 6.24 5.97 -5.20 -0.03 6.21 16 14 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 15 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 16 C 0.07 1.81 5.46 -17.81 -0.10 1.71 16 17 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16 18 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.17 3.52 7.01 -81.59 -0.57 2.95 16 23 C -0.09 -1.66 9.57 36.00 0.34 -1.32 16 24 C 0.13 1.41 5.82 -82.58 -0.48 0.93 16 25 C -0.15 -1.33 9.71 -39.44 -0.38 -1.72 16 26 C -0.08 -0.52 10.18 -39.28 -0.40 -0.92 16 27 C -0.17 -1.11 10.11 -39.44 -0.40 -1.51 16 28 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 29 N -0.46 -5.16 9.98 -9.47 -0.09 -5.25 16 30 H 0.21 2.51 7.80 -54.09 -0.42 2.09 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.28 8.08 -51.92 -0.42 0.86 16 33 H 0.18 2.91 8.06 -52.49 -0.42 2.48 16 34 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.30 7.05 -51.93 -0.37 0.93 16 39 H 0.09 1.53 6.51 -51.93 -0.34 1.19 16 40 H 0.14 0.96 7.95 -52.49 -0.42 0.55 16 41 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -32.18 382.70 -7.48 -39.66 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.19 Total: 3.89 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.24 Total: -7.12 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.82 Total: -42.67 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.62 Total: -15.34 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.18 -7.48 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341861031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.582 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds