Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47089 * 260.72979 * 3 2 1 5 5 H 1.08994 * 109.47201 * 305.00145 * 4 3 2 6 6 O 1.45197 * 109.47034 * 65.00126 * 4 3 2 7 7 C 1.34752 * 117.00160 * 269.99765 * 6 4 3 8 8 O 1.21524 * 119.99620 * 0.02562 * 7 6 4 9 9 C 1.47281 * 120.00314 * 180.02562 * 7 6 4 10 10 C 1.41349 * 126.42601 * 359.68510 * 9 7 6 11 11 N 1.30430 * 108.01335 * 179.85937 * 10 9 7 12 12 N 1.39934 * 108.91935 * 0.40539 * 11 10 9 13 13 C 1.46495 * 125.74563 * 179.73756 * 12 11 10 14 14 C 1.50698 * 109.47410 * 270.00424 * 13 12 11 15 15 H 1.08005 * 119.99708 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00705 * 179.97438 * 14 13 12 17 17 N 1.31525 * 119.99423 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00430 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47290 * 89.99764 * 18 16 14 20 20 H 1.48503 * 109.47375 * 209.99996 * 18 16 14 21 21 H 1.48502 * 109.47400 * 330.00174 * 18 16 14 22 22 C 1.34227 * 108.51209 * 359.74295 * 12 11 10 23 23 C 1.50694 * 126.29499 * 180.02562 * 22 12 11 24 24 C 1.50706 * 109.46818 * 185.00150 * 4 3 2 25 25 C 1.38227 * 119.61686 * 125.02645 * 24 4 3 26 26 C 1.38627 * 119.15663 * 179.70253 * 25 24 4 27 27 C 1.38669 * 118.42388 * 0.51169 * 26 25 24 28 28 C 1.38186 * 119.16143 * 359.50231 * 27 26 25 29 29 N 1.31856 * 119.61480 * 304.99563 * 24 4 3 30 30 H 4.44647 * 5.63338 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.46845 * 140.72734 * 3 2 1 32 32 H 1.09009 * 109.46934 * 20.72827 * 3 2 1 33 33 H 1.07997 * 125.99359 * 0.02562 * 10 9 7 34 34 H 1.09005 * 109.47319 * 30.00011 * 13 12 11 35 35 H 1.09003 * 109.47674 * 150.00212 * 13 12 11 36 36 H 0.96992 * 119.99324 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.46647 * 269.96985 * 23 22 12 38 38 H 1.09000 * 109.47580 * 29.96363 * 23 22 12 39 39 H 1.08999 * 109.47664 * 149.97284 * 23 22 12 40 40 H 1.07997 * 120.41943 * 359.97438 * 25 24 4 41 41 H 1.08008 * 120.78691 * 180.26734 * 26 25 24 42 42 H 1.08002 * 120.42244 * 179.78749 * 27 26 25 43 43 H 1.07996 * 119.61757 * 180.25243 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2333 1.4237 5 1 2.7209 1.1506 1.8200 6 8 2.7723 -0.8868 2.2642 7 6 1.5845 -0.8000 2.8946 8 8 0.8881 0.1847 2.7456 9 6 1.1303 -1.8985 3.7642 10 6 1.8237 -3.1016 4.0282 11 7 1.0985 -3.8142 4.8451 12 7 -0.0803 -3.1166 5.1316 13 6 -1.1592 -3.5822 6.0064 14 6 -2.1642 -4.3585 5.1950 15 1 -2.0144 -4.4914 4.1337 16 6 -3.2749 -4.8992 5.8074 17 7 -3.4570 -4.7378 7.0999 18 14 -4.5209 -5.8608 4.8015 19 1 -4.1400 -7.2960 4.7824 20 1 -5.8676 -5.7141 5.4100 21 1 -4.5458 -5.3369 3.4122 22 6 -0.0560 -1.9490 4.4699 23 6 -1.1259 -0.8881 4.4933 24 6 4.6578 0.3565 1.4054 25 6 5.2581 1.4757 1.9511 26 6 6.6406 1.5763 1.9347 27 6 7.3704 0.5479 1.3580 28 6 6.7007 -0.5403 0.8318 29 7 5.3840 -0.6049 0.8696 30 1 -1.0500 0.0002 -0.0001 31 1 3.0089 0.7964 -0.6505 32 1 3.0098 -0.9604 -0.3638 33 1 2.7865 -3.3805 3.6263 34 1 -0.7452 -4.2250 6.7833 35 1 -1.6491 -2.7245 6.4673 36 1 -4.2382 -5.1185 7.5308 37 1 -1.8434 -1.0779 3.6949 38 1 -1.6385 -0.9100 5.4551 39 1 -0.6700 0.0911 4.3468 40 1 4.6578 2.2597 2.3885 41 1 7.1373 2.4371 2.3576 42 1 8.4489 0.5945 1.3247 43 1 7.2620 -1.3473 0.3846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341861031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = 58.747938 kcal Electronic energy + Delta-G solvation = -28150.138611 eV Core-core repulsion = 24163.085246 eV Total energy + Delta-G solvation = -3987.053364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.44539 -41.53880 -40.61391 -37.60651 -35.86116 -35.31806 -33.90863 -33.45615 -33.07832 -32.80425 -30.35659 -29.36971 -28.35368 -26.20878 -25.41398 -24.47673 -23.94124 -22.50550 -21.58450 -20.50428 -19.21847 -18.95901 -18.75624 -18.11728 -17.54440 -17.16833 -16.87606 -16.73938 -16.35216 -16.18731 -15.88132 -15.35160 -15.06499 -14.94858 -14.71760 -14.37217 -14.18437 -14.14947 -13.91184 -13.79245 -13.71528 -13.60164 -13.15092 -13.01033 -12.99527 -12.71635 -12.46186 -12.32955 -12.28823 -11.87471 -11.84232 -11.34165 -11.04620 -10.92257 -10.80053 -10.77006 -10.34015 -10.31100 -10.02826 -9.65527 -8.39225 -6.55259 0.02490 0.38436 0.45964 1.17244 1.36926 1.38039 1.44503 1.51665 1.86337 1.91584 1.98745 2.27124 2.32074 2.90938 2.93684 3.12266 3.45614 3.66109 3.68191 3.84101 3.92814 4.01337 4.08963 4.13272 4.19109 4.25724 4.28373 4.43487 4.56908 4.62130 4.68636 4.76414 4.80341 4.84125 4.88744 4.99767 5.10684 5.13321 5.23418 5.28030 5.46019 5.47932 5.59387 5.72740 5.77839 5.97032 6.52786 6.71366 6.76105 6.92526 7.05261 7.15799 8.68960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002560 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.443573 B =10933.217731 C =11501.187040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.219 4.219 3 C -0.012 4.012 4 C 0.152 3.848 5 H 0.101 0.899 6 O -0.342 6.342 7 C 0.555 3.445 8 O -0.524 6.524 9 C -0.319 4.319 10 C 0.093 3.907 11 N -0.334 5.334 12 N -0.333 5.333 13 C 0.266 3.734 14 C -0.556 4.556 15 H 0.051 0.949 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.970 3.030 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.269 1.269 22 C 0.162 3.838 23 C -0.088 4.088 24 C 0.102 3.898 25 C -0.159 4.159 26 C -0.076 4.076 27 C -0.157 4.157 28 C 0.085 3.915 29 N -0.488 5.488 30 H 0.229 0.771 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.215 0.785 34 H 0.033 0.967 35 H 0.057 0.943 36 H 0.275 0.725 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.268 15.195 -12.563 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.219 4.219 3 C -0.049 4.049 4 C 0.096 3.904 5 H 0.119 0.881 6 O -0.259 6.259 7 C 0.402 3.598 8 O -0.414 6.414 9 C -0.333 4.333 10 C -0.094 4.094 11 N -0.153 5.153 12 N -0.110 5.110 13 C 0.148 3.852 14 C -0.594 4.594 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.195 1.195 21 H -0.194 1.194 22 C 0.026 3.974 23 C -0.146 4.146 24 C -0.035 4.035 25 C -0.178 4.178 26 C -0.101 4.101 27 C -0.177 4.177 28 C -0.072 4.072 29 N -0.198 5.198 30 H 0.246 0.754 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.231 0.769 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.168 0.832 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 18.348 13.548 -12.029 25.786 hybrid contribution -0.595 0.597 -0.239 0.876 sum 17.754 14.145 -12.268 25.803 Atomic orbital electron populations 1.25378 0.96729 1.00189 0.98757 1.23219 0.95067 1.01401 1.02182 1.19046 0.84498 1.05350 0.95966 1.21426 0.89801 0.89423 0.89702 0.88100 1.86663 1.36356 1.45379 1.57497 1.19719 0.78875 0.84726 0.76518 1.90745 1.55282 1.32773 1.62621 1.19065 0.99677 0.99850 1.14676 1.24435 0.99914 0.90790 0.94274 1.77160 0.95270 1.21633 1.21281 1.49182 1.15179 1.11997 1.34605 1.19458 0.81279 0.96205 0.88260 1.21373 1.06959 1.36062 0.95047 0.93047 1.25701 0.99351 0.96386 0.96142 1.69991 1.29888 1.45036 1.10391 0.85365 0.77906 0.78668 0.78658 1.19957 1.19460 1.19397 1.21933 0.95836 0.88774 0.90868 1.20643 0.94849 0.95340 1.03778 1.20610 0.93421 0.92069 0.97366 1.22192 0.97005 0.98924 0.99726 1.22006 0.92898 0.99650 0.95574 1.22622 1.03253 0.94109 0.97679 1.23293 0.89210 0.98474 0.96225 1.67372 1.09029 1.28088 1.15339 0.75392 0.86226 0.88297 0.76880 0.94857 0.92550 0.91598 0.89275 0.90422 0.87575 0.83250 0.81429 0.81306 0.80424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.49 18.31 74.32 1.36 -4.13 16 2 C -0.22 -6.23 11.24 31.13 0.35 -5.88 16 3 C -0.01 -0.28 5.23 28.79 0.15 -0.13 16 4 C 0.15 3.75 2.57 29.85 0.08 3.83 16 5 H 0.10 2.46 6.89 -2.39 -0.02 2.45 16 6 O -0.34 -10.65 9.67 -56.63 -0.55 -11.20 16 7 C 0.56 19.39 7.20 70.20 0.51 19.90 16 8 O -0.52 -18.57 11.87 19.76 0.23 -18.34 16 9 C -0.32 -12.37 6.13 -20.16 -0.12 -12.50 16 10 C 0.09 3.56 11.87 85.67 1.02 4.58 16 11 N -0.33 -15.23 12.50 -56.25 -0.70 -15.93 16 12 N -0.33 -15.66 3.56 -336.66 -1.20 -16.86 16 13 C 0.27 13.71 5.97 85.63 0.51 14.22 16 14 C -0.56 -30.63 9.39 25.60 0.24 -30.39 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 16 C 0.03 1.39 5.46 84.65 0.46 1.85 16 17 N -0.92 -50.89 13.29 21.45 0.28 -50.60 16 18 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.16 6.74 7.01 42.16 0.30 7.03 16 23 C -0.09 -3.11 9.57 71.23 0.68 -2.43 16 24 C 0.10 2.15 5.82 42.55 0.25 2.39 16 25 C -0.16 -2.44 9.71 22.36 0.22 -2.22 16 26 C -0.08 -0.79 10.18 22.47 0.23 -0.56 16 27 C -0.16 -1.53 10.11 22.36 0.23 -1.30 16 28 C 0.09 1.24 11.18 84.67 0.95 2.18 16 29 N -0.49 -10.43 9.98 -183.88 -1.83 -12.27 16 30 H 0.23 5.28 7.80 -4.42 -0.03 5.25 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.42 8.08 -2.38 -0.02 2.40 16 33 H 0.21 6.55 8.06 -2.91 -0.02 6.53 16 34 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 2.86 7.01 -2.39 -0.02 2.84 16 36 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 38 H 0.08 2.68 7.05 -2.39 -0.02 2.66 16 39 H 0.11 3.43 6.51 -2.39 -0.02 3.41 16 40 H 0.15 1.81 7.95 -2.91 -0.02 1.78 16 41 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 42 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -70.01 382.70 6.69 -63.32 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.03 Total: 20.77 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 7.39 Total: -3.56 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -3.45 Total: -95.66 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.31 Total: -29.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.01 6.69 -63.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341861031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.070 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds