Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38039 * 126.29066 * 2 1 4 4 C 1.47429 * 126.41539 * 359.97438 * 3 2 1 5 5 O 1.21599 * 120.00453 * 320.99387 * 4 3 2 6 6 N 1.34779 * 119.99792 * 140.99660 * 4 3 2 7 7 C 1.46500 * 120.00264 * 4.72200 * 6 4 3 8 8 C 1.46506 * 119.99691 * 184.72637 * 6 4 3 9 9 C 1.52581 * 109.22469 * 240.59438 * 8 6 4 10 10 C 1.53117 * 109.94393 * 168.96404 * 9 8 6 11 11 S 1.81742 * 108.80801 * 63.08718 * 10 9 8 12 12 O 1.42104 * 109.46972 * 190.71514 * 11 10 9 13 13 C 1.81747 * 102.22205 * 306.71295 * 11 10 9 14 14 C 1.52581 * 109.22665 * 119.40039 * 8 6 4 15 15 C 1.41288 * 107.17067 * 180.24472 * 3 2 1 16 16 N 1.30452 * 108.02427 * 359.60924 * 15 3 2 17 17 N 1.34253 * 126.29019 * 180.02562 * 2 1 3 18 18 C 1.46497 * 125.75819 * 359.96839 * 17 2 1 19 19 C 1.50692 * 109.47494 * 89.99171 * 18 17 2 20 20 H 1.07997 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00273 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99696 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00453 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47207 * 89.99872 * 23 21 19 25 25 H 1.48498 * 109.47544 * 210.00334 * 23 21 19 26 26 H 1.48507 * 109.47122 * 330.00519 * 23 21 19 27 27 H 1.09005 * 109.46952 * 90.00363 * 1 2 3 28 28 H 1.09000 * 109.47499 * 210.00155 * 1 2 3 29 29 H 1.08994 * 109.47573 * 330.00842 * 1 2 3 30 30 H 1.09000 * 109.46613 * 92.31150 * 7 6 4 31 31 H 1.08999 * 109.47096 * 332.31304 * 7 6 4 32 32 H 1.09000 * 109.47051 * 212.31388 * 7 6 4 33 33 H 1.09001 * 109.22441 * 0.02562 * 8 6 4 34 34 H 1.08997 * 109.39023 * 289.15200 * 9 8 6 35 35 H 1.08997 * 109.38951 * 48.85849 * 9 8 6 36 36 H 1.08999 * 109.60898 * 303.27816 * 10 9 8 37 37 H 1.09003 * 109.68036 * 182.93446 * 10 9 8 38 38 H 1.09005 * 109.57490 * 293.45512 * 13 11 10 39 39 H 1.09002 * 109.57764 * 173.07740 * 13 11 10 40 40 H 1.09000 * 109.38918 * 311.14540 * 14 8 6 41 41 H 1.09007 * 109.39295 * 70.84319 * 14 8 6 42 42 H 1.08004 * 125.98811 * 179.73848 * 15 3 2 43 43 H 1.08997 * 109.47465 * 209.99891 * 18 17 2 44 44 H 1.09006 * 109.47000 * 329.99585 * 18 17 2 45 45 H 0.97007 * 119.99750 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.9239 2.8574 -0.6637 6 7 2.5512 3.4335 0.7341 7 6 3.7701 3.0500 1.4506 8 6 2.0555 4.8097 0.8161 9 6 3.1140 5.7588 0.2622 10 6 2.5187 7.1582 0.0836 11 16 2.0295 7.7990 1.7125 12 8 1.2556 8.9789 1.5443 13 6 0.9708 6.4656 2.3483 14 6 1.7399 5.1442 2.2710 15 6 3.6589 0.6499 -0.0058 16 7 3.6340 -0.6544 -0.0005 17 7 2.3016 -1.0821 -0.0005 18 6 1.8501 -2.4758 -0.0005 19 6 1.6944 -2.9535 -1.4211 20 1 1.9106 -2.2859 -2.2421 21 6 1.2769 -4.2432 -1.6730 22 7 1.0141 -5.0563 -0.6733 23 14 1.0846 -4.8356 -3.4341 24 1 2.3657 -5.4236 -3.9013 25 1 0.0158 -5.8646 -3.4964 26 1 0.7196 -3.6894 -4.3049 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 4.6382 3.2450 0.8209 31 1 3.7294 1.9885 1.6947 32 1 3.8496 3.6312 2.3693 33 1 1.1460 4.8996 0.2221 34 1 3.9542 5.8079 0.9549 35 1 3.4629 5.3888 -0.7019 36 1 1.6445 7.1038 -0.5651 37 1 3.2625 7.8196 -0.3606 38 1 0.0662 6.3977 1.7438 39 1 0.7047 6.6733 3.3848 40 1 1.1342 4.3472 2.7023 41 1 2.6702 5.2336 2.8319 42 1 4.5448 1.2677 -0.0112 43 1 2.5849 -3.0958 0.5129 44 1 0.8916 -2.5472 0.5139 45 1 0.7201 -5.9636 -0.8505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362277945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -1.844617 kcal Electronic energy + Delta-G solvation = -27429.661510 eV Core-core repulsion = 23575.424607 eV Total energy + Delta-G solvation = -3854.236903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96356 -39.56575 -37.12428 -35.95492 -34.34703 -33.69580 -32.11542 -31.88127 -31.17278 -28.12771 -27.12346 -26.83711 -25.94715 -23.61109 -23.50204 -22.07514 -20.52452 -19.73989 -18.51519 -17.86339 -16.89006 -16.78608 -16.63484 -15.82618 -15.46727 -15.42770 -15.15980 -14.71364 -14.59601 -14.43029 -13.98746 -13.84041 -13.43221 -13.26358 -13.17637 -12.93336 -12.63634 -12.51816 -12.38092 -12.26831 -12.05847 -11.88582 -11.77141 -11.69582 -11.64536 -11.53779 -11.11263 -10.99911 -10.91175 -10.38456 -10.29614 -10.09411 -9.94421 -9.47292 -8.72844 -8.70601 -8.60345 -8.57888 -7.91997 -6.35660 -4.43309 1.21893 2.17161 2.20827 2.75939 2.89405 3.17342 3.23790 3.26816 3.37683 3.46073 3.60840 4.21889 4.23054 4.49243 4.61708 4.66305 4.78182 4.87491 4.97249 4.99485 5.08756 5.16249 5.20741 5.35770 5.39354 5.44968 5.53730 5.57573 5.61190 5.62145 5.73509 5.86266 5.90196 5.93586 5.99853 6.34044 6.41748 6.56515 6.76806 6.87235 7.13035 7.48140 7.54360 7.74797 7.76365 8.34424 8.46471 8.62596 9.23842 10.72460 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.002263 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.935886 B =12368.192314 C =12520.883673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.155 3.845 3 C -0.328 4.328 4 C 0.606 3.394 5 O -0.549 6.549 6 N -0.612 5.612 7 C 0.071 3.929 8 C 0.127 3.873 9 C -0.104 4.104 10 C -0.436 4.436 11 S 1.233 4.767 12 O -0.858 6.858 13 C -0.435 4.435 14 C -0.105 4.105 15 C 0.056 3.944 16 N -0.295 5.295 17 N -0.312 5.312 18 C 0.252 3.748 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.178 0.822 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 20.667 9.603 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.019 3.981 3 C -0.343 4.343 4 C 0.397 3.603 5 O -0.426 6.426 6 N -0.345 5.345 7 C -0.073 4.073 8 C 0.023 3.977 9 C -0.143 4.143 10 C -0.574 4.574 11 S 1.431 4.569 12 O -0.854 6.854 13 C -0.573 4.573 14 C -0.144 4.144 15 C -0.131 4.131 16 N -0.116 5.116 17 N -0.090 5.090 18 C 0.135 3.865 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.195 0.805 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.950 20.252 9.729 23.518 hybrid contribution -2.251 -0.159 -2.341 3.251 sum 4.700 20.092 7.388 21.918 Atomic orbital electron populations 1.20424 0.87139 1.02874 1.04057 1.21332 0.94691 0.86600 0.95515 1.19569 0.93440 0.92183 1.29151 1.17494 0.81323 0.84115 0.77396 1.90721 1.28812 1.80870 1.42231 1.47615 1.27558 1.09005 1.50368 1.22035 0.86090 1.02812 0.96317 1.21059 0.98649 0.81478 0.96527 1.21486 0.98215 0.91316 1.03277 1.27552 1.07584 1.04215 1.18022 1.70401 1.08463 0.81695 0.96352 1.93118 1.72962 1.35586 1.83719 1.27547 1.10526 1.09966 1.09309 1.21491 1.00804 0.95498 0.96613 1.23839 0.96218 0.92411 1.00586 1.77155 0.98540 1.12218 1.23661 1.49322 1.02436 1.08201 1.49002 1.19839 0.96347 0.70924 0.99424 1.21252 1.47387 0.98126 0.91044 0.91657 1.24919 0.94426 0.95996 0.98303 1.69913 1.44567 1.07160 1.31113 0.86326 0.78105 0.78649 0.83487 1.20222 1.20786 1.19581 0.89490 0.90616 0.90551 0.92621 0.89550 0.91289 0.88222 0.89862 0.90228 0.89244 0.86533 0.89233 0.86496 0.90185 0.89834 0.80468 0.92502 0.92652 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.56 36.00 0.34 -1.16 16 2 C 0.16 3.05 7.00 -81.61 -0.57 2.48 16 3 C -0.33 -5.72 5.31 -105.07 -0.56 -6.28 16 4 C 0.61 9.61 7.32 -12.52 -0.09 9.52 16 5 O -0.55 -10.46 15.69 5.28 0.08 -10.38 16 6 N -0.61 -6.72 2.74 -175.69 -0.48 -7.20 16 7 C 0.07 0.54 8.43 59.85 0.50 1.05 16 8 C 0.13 1.14 2.25 -68.36 -0.15 0.99 16 9 C -0.10 -0.67 4.87 -26.89 -0.13 -0.80 16 10 C -0.44 -2.90 6.44 37.22 0.24 -2.66 16 11 S 1.23 7.73 13.75 -107.50 -1.48 6.25 16 12 O -0.86 -11.53 18.14 -35.23 -0.64 -12.17 16 13 C -0.44 -2.86 6.44 37.20 0.24 -2.62 16 14 C -0.10 -0.67 4.76 -26.90 -0.13 -0.80 16 15 C 0.06 0.92 9.63 -16.98 -0.16 0.76 16 16 N -0.30 -6.10 12.50 30.86 0.39 -5.71 16 17 N -0.31 -6.84 3.56 -57.78 -0.21 -7.05 16 18 C 0.25 6.12 5.97 -5.20 -0.03 6.09 16 19 C -0.54 -14.42 9.39 -34.44 -0.32 -14.74 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 23 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.08 1.27 7.05 -51.93 -0.37 0.91 16 29 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 30 H 0.06 0.34 7.77 -51.93 -0.40 -0.06 16 31 H 0.09 0.82 5.34 -51.93 -0.28 0.54 16 32 H 0.07 0.32 6.68 -51.93 -0.35 -0.02 16 33 H 0.10 1.20 6.82 -51.93 -0.35 0.85 16 34 H 0.08 0.26 7.92 -51.93 -0.41 -0.15 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.26 7.07 -51.93 -0.37 -0.11 16 42 H 0.18 2.15 6.66 -52.48 -0.35 1.80 16 43 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.33 7.02 -51.93 -0.36 0.97 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -36.91 374.62 -8.46 -45.37 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.57 Total: -0.41 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.92 Total: -6.48 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.44 Total: -43.57 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.56 Total: -22.55 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.48 Total: 6.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.91 -8.46 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362277945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.522 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds