Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38039 * 126.29066 * 2 1 4 4 C 1.47429 * 126.41539 * 359.97438 * 3 2 1 5 5 O 1.21599 * 120.00453 * 320.99387 * 4 3 2 6 6 N 1.34779 * 119.99792 * 140.99660 * 4 3 2 7 7 C 1.46500 * 120.00264 * 4.72200 * 6 4 3 8 8 C 1.46506 * 119.99691 * 184.72637 * 6 4 3 9 9 C 1.52581 * 109.22469 * 240.59438 * 8 6 4 10 10 C 1.53117 * 109.94393 * 168.96404 * 9 8 6 11 11 S 1.81742 * 108.80801 * 63.08718 * 10 9 8 12 12 O 1.42104 * 109.46972 * 190.71514 * 11 10 9 13 13 C 1.81747 * 102.22205 * 306.71295 * 11 10 9 14 14 C 1.52581 * 109.22665 * 119.40039 * 8 6 4 15 15 C 1.41288 * 107.17067 * 180.24472 * 3 2 1 16 16 N 1.30452 * 108.02427 * 359.60924 * 15 3 2 17 17 N 1.34253 * 126.29019 * 180.02562 * 2 1 3 18 18 C 1.46497 * 125.75819 * 359.96839 * 17 2 1 19 19 C 1.50692 * 109.47494 * 89.99171 * 18 17 2 20 20 H 1.07997 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00273 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99696 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00453 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47207 * 89.99872 * 23 21 19 25 25 H 1.48498 * 109.47544 * 210.00334 * 23 21 19 26 26 H 1.48507 * 109.47122 * 330.00519 * 23 21 19 27 27 H 1.09005 * 109.46952 * 90.00363 * 1 2 3 28 28 H 1.09000 * 109.47499 * 210.00155 * 1 2 3 29 29 H 1.08994 * 109.47573 * 330.00842 * 1 2 3 30 30 H 1.09000 * 109.46613 * 92.31150 * 7 6 4 31 31 H 1.08999 * 109.47096 * 332.31304 * 7 6 4 32 32 H 1.09000 * 109.47051 * 212.31388 * 7 6 4 33 33 H 1.09001 * 109.22441 * 0.02562 * 8 6 4 34 34 H 1.08997 * 109.39023 * 289.15200 * 9 8 6 35 35 H 1.08997 * 109.38951 * 48.85849 * 9 8 6 36 36 H 1.08999 * 109.60898 * 303.27816 * 10 9 8 37 37 H 1.09003 * 109.68036 * 182.93446 * 10 9 8 38 38 H 1.09005 * 109.57490 * 293.45512 * 13 11 10 39 39 H 1.09002 * 109.57764 * 173.07740 * 13 11 10 40 40 H 1.09000 * 109.38918 * 311.14540 * 14 8 6 41 41 H 1.09007 * 109.39295 * 70.84319 * 14 8 6 42 42 H 1.08004 * 125.98811 * 179.73848 * 15 3 2 43 43 H 1.08997 * 109.47465 * 209.99891 * 18 17 2 44 44 H 1.09006 * 109.47000 * 329.99585 * 18 17 2 45 45 H 0.97007 * 119.99750 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.9239 2.8574 -0.6637 6 7 2.5512 3.4335 0.7341 7 6 3.7701 3.0500 1.4506 8 6 2.0555 4.8097 0.8161 9 6 3.1140 5.7588 0.2622 10 6 2.5187 7.1582 0.0836 11 16 2.0295 7.7990 1.7125 12 8 1.2556 8.9789 1.5443 13 6 0.9708 6.4656 2.3483 14 6 1.7399 5.1442 2.2710 15 6 3.6589 0.6499 -0.0058 16 7 3.6340 -0.6544 -0.0005 17 7 2.3016 -1.0821 -0.0005 18 6 1.8501 -2.4758 -0.0005 19 6 1.6944 -2.9535 -1.4211 20 1 1.9106 -2.2859 -2.2421 21 6 1.2769 -4.2432 -1.6730 22 7 1.0141 -5.0563 -0.6733 23 14 1.0846 -4.8356 -3.4341 24 1 2.3657 -5.4236 -3.9013 25 1 0.0158 -5.8646 -3.4964 26 1 0.7196 -3.6894 -4.3049 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 4.6382 3.2450 0.8209 31 1 3.7294 1.9885 1.6947 32 1 3.8496 3.6312 2.3693 33 1 1.1460 4.8996 0.2221 34 1 3.9542 5.8079 0.9549 35 1 3.4629 5.3888 -0.7019 36 1 1.6445 7.1038 -0.5651 37 1 3.2625 7.8196 -0.3606 38 1 0.0662 6.3977 1.7438 39 1 0.7047 6.6733 3.3848 40 1 1.1342 4.3472 2.7023 41 1 2.6702 5.2336 2.8319 42 1 4.5448 1.2677 -0.0112 43 1 2.5849 -3.0958 0.5129 44 1 0.8916 -2.5472 0.5139 45 1 0.7201 -5.9636 -0.8505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362277945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -29.015293 kcal Electronic energy + Delta-G solvation = -27430.839719 eV Core-core repulsion = 23575.424607 eV Total energy + Delta-G solvation = -3855.415112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37496 -40.63683 -38.09116 -36.82860 -35.87942 -34.97183 -33.74577 -32.71966 -32.42717 -29.49497 -28.39043 -28.01998 -26.91847 -25.32677 -24.15322 -23.24384 -21.64589 -20.86728 -19.80269 -18.85857 -18.56233 -18.00604 -17.50825 -17.02322 -16.50846 -16.35060 -16.24468 -16.06955 -15.82240 -15.38976 -15.10965 -14.82176 -14.73921 -14.31346 -14.13529 -13.94685 -13.82292 -13.69462 -13.59133 -13.42070 -13.35163 -13.15724 -12.97079 -12.76481 -12.68157 -12.41412 -12.39368 -12.36364 -12.31202 -11.84518 -11.76890 -11.59694 -10.78190 -10.76894 -10.76755 -10.22529 -9.62393 -9.34391 -9.26049 -8.38829 -6.54685 0.67603 0.75626 1.35113 1.35588 1.40245 1.47696 1.62698 1.67578 2.04161 2.31318 2.35075 2.84014 2.93215 3.59544 3.72821 3.78426 3.89002 4.04430 4.06840 4.12847 4.17714 4.25043 4.38391 4.41864 4.49327 4.54576 4.64470 4.76360 4.79516 4.88510 4.91197 4.94494 4.95142 5.07168 5.09299 5.14443 5.19487 5.32990 5.34000 5.48463 5.66562 5.75169 5.77663 6.06028 6.45567 6.54589 6.87036 7.16314 7.29511 8.68671 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.002263 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.935886 B =12368.192314 C =12520.883673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.133 3.867 3 C -0.322 4.322 4 C 0.601 3.399 5 O -0.592 6.592 6 N -0.597 5.597 7 C 0.056 3.944 8 C 0.120 3.880 9 C -0.098 4.098 10 C -0.437 4.437 11 S 1.306 4.694 12 O -0.931 6.931 13 C -0.436 4.436 14 C -0.100 4.100 15 C 0.081 3.919 16 N -0.335 5.335 17 N -0.338 5.338 18 C 0.269 3.731 19 C -0.556 4.556 20 H 0.048 0.952 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.968 3.032 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.059 0.941 39 H 0.138 0.862 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.227 0.773 43 H 0.034 0.966 44 H 0.050 0.950 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 22.293 10.596 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.338 4.338 4 C 0.391 3.609 5 O -0.474 6.474 6 N -0.328 5.328 7 C -0.085 4.085 8 C 0.017 3.983 9 C -0.137 4.137 10 C -0.575 4.575 11 S 1.506 4.494 12 O -0.927 6.927 13 C -0.575 4.575 14 C -0.139 4.139 15 C -0.105 4.105 16 N -0.155 5.155 17 N -0.115 5.115 18 C 0.150 3.850 19 C -0.594 4.594 20 H 0.066 0.934 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.792 3.208 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.198 1.198 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.079 0.921 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.152 0.848 42 H 0.243 0.757 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.395 21.920 10.764 26.165 hybrid contribution -2.953 -0.570 -2.605 3.979 sum 6.442 21.350 8.159 23.746 Atomic orbital electron populations 1.20394 0.86414 1.03493 1.03577 1.21797 0.95592 0.86888 0.95918 1.19852 0.93600 0.92720 1.27599 1.17376 0.81368 0.84144 0.78013 1.90708 1.30799 1.81389 1.44457 1.47619 1.27726 1.08849 1.48578 1.22414 0.85069 1.02612 0.98421 1.21269 0.98107 0.80930 0.98034 1.21511 0.98571 0.89711 1.03899 1.27582 1.07129 1.05148 1.17658 1.69472 1.06087 0.79107 0.94716 1.92988 1.74623 1.40065 1.85005 1.27574 1.09513 1.10272 1.10121 1.21517 1.02859 0.94532 0.94946 1.24560 0.97331 0.91303 0.97272 1.77104 0.98142 1.14374 1.25836 1.49030 1.03375 1.07571 1.51522 1.19330 0.95331 0.72467 0.97863 1.21390 1.47871 0.98394 0.91730 0.93384 1.25682 0.93882 0.95975 1.02087 1.69985 1.44869 1.07564 1.32867 0.85398 0.78428 0.78138 0.78812 1.19663 1.19528 1.19813 0.90471 0.90632 0.89176 0.89780 0.91309 0.86994 0.92344 0.84732 0.91436 0.92239 0.84445 0.92143 0.84435 0.91498 0.84784 0.75735 0.94804 0.93199 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.92 9.56 71.24 0.68 -2.24 16 2 C 0.13 5.34 7.00 42.14 0.29 5.64 16 3 C -0.32 -11.05 5.31 -20.15 -0.11 -11.15 16 4 C 0.60 18.60 7.32 86.66 0.63 19.24 16 5 O -0.59 -23.09 15.69 -4.03 -0.06 -23.15 16 6 N -0.60 -11.46 2.74 -828.02 -2.27 -13.72 16 7 C 0.06 0.58 8.43 127.77 1.08 1.65 16 8 C 0.12 1.89 2.25 44.71 0.10 1.99 16 9 C -0.10 -0.89 4.87 30.49 0.15 -0.75 16 10 C -0.44 -4.86 6.44 72.02 0.46 -4.40 16 11 S 1.31 13.35 13.75 -56.49 -0.78 12.58 16 12 O -0.93 -24.50 18.14 -148.98 -2.70 -27.20 16 13 C -0.44 -4.85 6.44 72.01 0.46 -4.39 16 14 C -0.10 -0.92 4.76 30.48 0.14 -0.78 16 15 C 0.08 2.55 9.63 85.65 0.82 3.37 16 16 N -0.33 -13.79 12.50 -56.27 -0.70 -14.50 16 17 N -0.34 -15.20 3.56 -336.73 -1.20 -16.40 16 18 C 0.27 13.65 5.97 85.63 0.51 14.17 16 19 C -0.56 -30.65 9.39 25.60 0.24 -30.41 16 20 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 21 C 0.03 1.36 5.46 84.65 0.46 1.83 16 22 N -0.91 -50.81 13.29 21.45 0.28 -50.52 16 23 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.07 2.67 7.05 -2.39 -0.02 2.66 16 29 H 0.09 2.94 7.69 -2.39 -0.02 2.92 16 30 H 0.08 0.48 7.77 -2.39 -0.02 0.46 16 31 H 0.07 1.03 5.34 -2.39 -0.01 1.01 16 32 H 0.11 0.25 6.68 -2.39 -0.02 0.24 16 33 H 0.06 1.44 6.82 -2.39 -0.02 1.42 16 34 H 0.13 -0.10 7.92 -2.39 -0.02 -0.12 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 -0.08 7.07 -2.38 -0.02 -0.09 16 42 H 0.23 4.52 6.66 -2.91 -0.02 4.50 16 43 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 2.53 7.02 -2.38 -0.02 2.52 16 45 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -86.71 374.62 1.54 -85.16 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.00 Total: 9.07 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.94 Total: -6.23 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.88 Total: -95.15 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -2.77 Total: -50.35 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 13.35 SS G_CDS: -0.78 Total: 12.58 kcal Total: -86.71 1.54 -85.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362277945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.148 kcal (2) G-P(sol) polarization free energy of solvation -86.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds