Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99923 * 179.97438 * 6 4 3 8 8 H 1.08997 * 110.66899 * 34.29970 * 7 6 4 9 9 C 1.54890 * 110.75713 * 271.06497 * 7 6 4 10 10 C 1.54460 * 104.09845 * 203.89308 * 9 7 6 11 11 C 1.53877 * 106.68798 * 23.34155 * 10 9 7 12 12 H 1.08998 * 110.07018 * 240.85099 * 11 10 9 13 13 S 1.81398 * 110.03266 * 119.44283 * 11 10 9 14 14 C 1.81405 * 103.00060 * 57.83380 * 13 11 10 15 15 O 1.42097 * 109.47031 * 301.44406 * 13 11 10 16 16 C 1.54262 * 106.59876 * 0.15837 * 11 10 9 17 17 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 18 18 N 1.30453 * 108.01984 * 0.02562 * 17 3 2 19 19 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.75692 * 359.97438 * 19 2 1 21 21 C 1.50696 * 109.47131 * 270.00148 * 20 19 2 22 22 H 1.08005 * 120.00013 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00061 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99379 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00131 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47442 * 59.99608 * 25 23 21 27 27 H 1.48500 * 109.47134 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47149 * 299.99801 * 25 23 21 29 29 H 1.09002 * 109.46437 * 269.99685 * 1 2 3 30 30 H 1.08997 * 109.47332 * 29.99675 * 1 2 3 31 31 H 1.08994 * 109.47277 * 150.00096 * 1 2 3 32 32 H 0.97002 * 120.00686 * 359.97438 * 6 4 3 33 33 H 1.08998 * 110.47927 * 322.42098 * 9 7 6 34 34 H 1.08995 * 110.48435 * 85.05891 * 9 7 6 35 35 H 1.09004 * 109.85948 * 264.09699 * 10 9 7 36 36 H 1.09000 * 110.16529 * 142.74961 * 10 9 7 37 37 H 1.08999 * 109.47182 * 60.00002 * 14 13 11 38 38 H 1.09003 * 109.46742 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.46974 * 300.00203 * 14 13 11 40 40 H 1.09001 * 110.48789 * 217.71370 * 16 11 10 41 41 H 1.09001 * 110.60200 * 95.12314 * 16 11 10 42 42 H 1.07997 * 125.99262 * 179.97438 * 17 3 2 43 43 H 1.09003 * 109.46617 * 30.00350 * 20 19 2 44 44 H 1.08999 * 109.46980 * 150.00042 * 20 19 2 45 45 H 0.97006 * 119.99286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.4459 5.0265 0.5750 9 6 2.1748 5.4254 -1.4482 10 6 2.3361 6.9567 -1.3262 11 6 3.1625 7.2140 -0.0539 12 1 2.5846 7.8087 0.6535 13 16 4.7022 8.0749 -0.4766 14 6 4.1150 9.5809 -1.2999 15 8 5.4458 7.2902 -1.3987 16 6 3.4794 5.8316 0.5528 17 6 3.6591 0.6499 -0.0006 18 7 3.6340 -0.6543 -0.0015 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4758 -0.0006 21 6 1.6958 -2.9539 1.4202 22 1 1.9128 -2.2865 2.2411 23 6 1.2775 -4.2434 1.6720 24 7 1.0128 -5.0558 0.6723 25 14 1.0855 -4.8358 3.4331 26 1 0.0850 -3.9909 4.1334 27 1 0.6267 -6.2482 3.4330 28 1 2.3916 -4.7392 4.1331 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 3.7462 3.2974 -0.0005 33 1 2.9423 5.0134 -2.1034 34 1 1.1809 5.1714 -1.8166 35 1 1.3565 7.4263 -1.2366 36 1 2.8599 7.3499 -2.1975 37 1 3.4913 10.1515 -0.6119 38 1 4.9695 10.1863 -1.6024 39 1 3.5314 9.3100 -2.1797 40 1 3.4351 5.8734 1.6411 41 1 4.4591 5.4843 0.2248 42 1 4.5449 1.2677 -0.0012 43 1 0.8913 -2.5470 -0.5142 44 1 2.5846 -3.0957 -0.5148 45 1 0.7189 -5.9631 0.8495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413867021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -16.166948 kcal Electronic energy + Delta-G solvation = -26715.839469 eV Core-core repulsion = 22860.981503 eV Total energy + Delta-G solvation = -3854.857966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77802 -39.36190 -37.56616 -35.98768 -33.99003 -33.56110 -32.03218 -31.11868 -29.70990 -29.04889 -28.24226 -26.93378 -26.39751 -23.47150 -22.20986 -21.12504 -20.83404 -19.84236 -18.92472 -17.93193 -17.12270 -16.77147 -16.70522 -16.02733 -15.29331 -15.19585 -14.99944 -14.75830 -14.47725 -14.13501 -14.00044 -13.92908 -13.47214 -13.23788 -13.18475 -12.68230 -12.56146 -12.45885 -12.42164 -12.21406 -12.08526 -11.83555 -11.75495 -11.58303 -11.46143 -11.26907 -11.12788 -10.86830 -10.86001 -10.36467 -10.35257 -10.16006 -9.94543 -9.38037 -8.93146 -8.69980 -8.58466 -8.57301 -7.89518 -6.32726 -4.40578 1.15401 2.19797 2.20641 2.81643 3.16639 3.20479 3.24406 3.28935 3.41170 3.58095 3.89468 4.17884 4.24875 4.27480 4.57388 4.70219 4.79612 4.92882 5.01298 5.05455 5.13767 5.19572 5.21348 5.27677 5.33540 5.41610 5.50801 5.58307 5.63760 5.75243 5.79388 5.91555 5.96829 6.08258 6.13856 6.43439 6.58085 6.67923 6.81715 6.91949 7.17842 7.56804 7.76451 7.78213 7.81366 8.39691 8.62630 8.65496 9.26068 10.75445 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.002025 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.798732 B =13820.580128 C =14003.954741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.557 6.557 6 N -0.729 5.729 7 C 0.152 3.848 8 H 0.098 0.902 9 C -0.136 4.136 10 C -0.109 4.109 11 C -0.414 4.414 12 H 0.128 0.872 13 S 1.246 4.754 14 C -0.491 4.491 15 O -0.843 6.843 16 C -0.106 4.106 17 C 0.058 3.942 18 N -0.296 5.296 19 N -0.314 5.314 20 C 0.251 3.749 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.175 0.825 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 28.976 0.339 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.396 3.604 5 O -0.436 6.436 6 N -0.380 5.380 7 C 0.046 3.954 8 H 0.116 0.884 9 C -0.175 4.175 10 C -0.148 4.148 11 C -0.531 4.531 12 H 0.146 0.854 13 S 1.444 4.556 14 C -0.648 4.648 15 O -0.839 6.839 16 C -0.145 4.145 17 C -0.129 4.129 18 N -0.116 5.116 19 N -0.091 5.091 20 C 0.134 3.866 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.192 0.808 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.063 27.416 0.436 27.883 hybrid contribution -1.263 -0.191 -0.966 1.601 sum 3.800 27.225 -0.530 27.494 Atomic orbital electron populations 1.20562 0.86835 1.03731 1.03890 1.21476 0.94945 0.86552 0.94267 1.19679 0.93134 0.92516 1.29566 1.17320 0.85019 0.83915 0.74123 1.90679 1.16706 1.84472 1.51750 1.45717 1.09779 1.05063 1.77432 1.21789 0.97781 0.80076 0.95737 0.88412 1.22788 1.02805 0.94064 0.97858 1.22110 1.00138 0.97669 0.94860 1.28187 1.15585 1.06028 1.03293 0.85420 1.70454 0.86274 0.88538 1.10382 1.27680 1.09523 1.16928 1.10698 1.93161 1.57340 1.66747 1.66630 1.22300 0.99346 0.91785 1.01070 1.23726 0.96354 0.92626 1.00214 1.77143 0.98597 1.12272 1.23539 1.49367 1.02488 1.08295 1.48921 1.19849 0.96395 0.70925 0.99433 1.21205 1.47495 0.98151 0.90976 0.91718 1.24930 0.94456 0.95994 0.98326 1.69909 1.44409 1.07215 1.31173 0.86367 0.78868 0.77731 0.83473 1.19857 1.20880 1.19895 0.89853 0.88872 0.90910 0.76715 0.91121 0.90737 0.90881 0.92580 0.86964 0.87769 0.89891 0.89466 0.90522 0.80788 0.92577 0.92527 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.01 0.34 -1.36 16 2 C 0.16 3.43 7.01 -81.60 -0.57 2.86 16 3 C -0.33 -6.24 6.13 -105.06 -0.64 -6.89 16 4 C 0.61 10.24 7.81 -12.52 -0.10 10.14 16 5 O -0.56 -10.66 14.52 5.27 0.08 -10.58 16 6 N -0.73 -9.31 5.19 -52.95 -0.27 -9.59 16 7 C 0.15 1.64 3.21 -65.93 -0.21 1.43 16 8 H 0.10 1.16 7.62 -51.93 -0.40 0.77 16 9 C -0.14 -1.50 6.53 -24.97 -0.16 -1.66 16 10 C -0.11 -0.89 6.13 -25.51 -0.16 -1.05 16 11 C -0.41 -2.32 3.47 -25.61 -0.09 -2.40 16 12 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 13 S 1.25 6.22 12.97 -107.50 -1.39 4.82 16 14 C -0.49 -1.94 10.37 101.05 1.05 -0.90 16 15 O -0.84 -10.29 17.89 -35.23 -0.63 -10.92 16 16 C -0.11 -0.78 5.99 -25.07 -0.15 -0.93 16 17 C 0.06 1.04 11.50 -16.98 -0.20 0.84 16 18 N -0.30 -6.50 12.50 30.86 0.39 -6.11 16 19 N -0.31 -7.23 3.56 -57.77 -0.21 -7.43 16 20 C 0.25 6.34 5.97 -5.19 -0.03 6.31 16 21 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 16 22 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 25 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 31 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 32 H 0.40 4.30 7.50 -40.82 -0.31 4.00 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 6.48 -51.93 -0.34 0.16 16 37 H 0.11 0.15 8.14 -51.92 -0.42 -0.28 16 38 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.08 0.47 7.04 -51.93 -0.37 0.11 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.61 7.48 -51.93 -0.39 0.22 16 42 H 0.18 2.29 7.50 -52.49 -0.39 1.90 16 43 H 0.06 1.41 7.02 -51.93 -0.36 1.04 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -36.82 382.89 -8.50 -45.32 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.60 Total: 3.76 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.34 Total: -6.89 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.64 Total: -47.17 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.55 Total: -21.51 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.39 Total: 4.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.82 -8.50 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413867021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.152 kcal (2) G-P(sol) polarization free energy of solvation -36.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds