Wall clock time and date at job start Sat Apr 11 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38048 * 126.28973 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99499 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99923 * 179.97438 * 6 4 3 8 8 H 1.08997 * 110.66899 * 34.29970 * 7 6 4 9 9 C 1.54890 * 110.75713 * 271.06497 * 7 6 4 10 10 C 1.54460 * 104.09845 * 203.89308 * 9 7 6 11 11 C 1.53877 * 106.68798 * 23.34155 * 10 9 7 12 12 H 1.08998 * 110.07018 * 240.85099 * 11 10 9 13 13 S 1.81398 * 110.03266 * 119.44283 * 11 10 9 14 14 C 1.81405 * 103.00060 * 57.83380 * 13 11 10 15 15 O 1.42097 * 109.47031 * 301.44406 * 13 11 10 16 16 C 1.54262 * 106.59876 * 0.15837 * 11 10 9 17 17 C 1.41288 * 107.17058 * 180.02562 * 3 2 1 18 18 N 1.30453 * 108.01984 * 0.02562 * 17 3 2 19 19 N 1.34251 * 126.29069 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.75692 * 359.97438 * 19 2 1 21 21 C 1.50696 * 109.47131 * 270.00148 * 20 19 2 22 22 H 1.08005 * 120.00013 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00061 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99379 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00131 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47442 * 59.99608 * 25 23 21 27 27 H 1.48500 * 109.47134 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47149 * 299.99801 * 25 23 21 29 29 H 1.09002 * 109.46437 * 269.99685 * 1 2 3 30 30 H 1.08997 * 109.47332 * 29.99675 * 1 2 3 31 31 H 1.08994 * 109.47277 * 150.00096 * 1 2 3 32 32 H 0.97002 * 120.00686 * 359.97438 * 6 4 3 33 33 H 1.08998 * 110.47927 * 322.42098 * 9 7 6 34 34 H 1.08995 * 110.48435 * 85.05891 * 9 7 6 35 35 H 1.09004 * 109.85948 * 264.09699 * 10 9 7 36 36 H 1.09000 * 110.16529 * 142.74961 * 10 9 7 37 37 H 1.08999 * 109.47182 * 60.00002 * 14 13 11 38 38 H 1.09003 * 109.46742 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.46974 * 300.00203 * 14 13 11 40 40 H 1.09001 * 110.48789 * 217.71370 * 16 11 10 41 41 H 1.09001 * 110.60200 * 95.12314 * 16 11 10 42 42 H 1.07997 * 125.99262 * 179.97438 * 17 3 2 43 43 H 1.09003 * 109.46617 * 30.00350 * 20 19 2 44 44 H 1.08999 * 109.46980 * 150.00042 * 20 19 2 45 45 H 0.97006 * 119.99286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7999 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.4459 5.0265 0.5750 9 6 2.1748 5.4254 -1.4482 10 6 2.3361 6.9567 -1.3262 11 6 3.1625 7.2140 -0.0539 12 1 2.5846 7.8087 0.6535 13 16 4.7022 8.0749 -0.4766 14 6 4.1150 9.5809 -1.2999 15 8 5.4458 7.2902 -1.3987 16 6 3.4794 5.8316 0.5528 17 6 3.6591 0.6499 -0.0006 18 7 3.6340 -0.6543 -0.0015 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4758 -0.0006 21 6 1.6958 -2.9539 1.4202 22 1 1.9128 -2.2865 2.2411 23 6 1.2775 -4.2434 1.6720 24 7 1.0128 -5.0558 0.6723 25 14 1.0855 -4.8358 3.4331 26 1 0.0850 -3.9909 4.1334 27 1 0.6267 -6.2482 3.4330 28 1 2.3916 -4.7392 4.1331 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 3.7462 3.2974 -0.0005 33 1 2.9423 5.0134 -2.1034 34 1 1.1809 5.1714 -1.8166 35 1 1.3565 7.4263 -1.2366 36 1 2.8599 7.3499 -2.1975 37 1 3.4913 10.1515 -0.6119 38 1 4.9695 10.1863 -1.6024 39 1 3.5314 9.3100 -2.1797 40 1 3.4351 5.8734 1.6411 41 1 4.4591 5.4843 0.2248 42 1 4.5449 1.2677 -0.0012 43 1 0.8913 -2.5470 -0.5142 44 1 2.5846 -3.0957 -0.5148 45 1 0.7189 -5.9631 0.8495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413867021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:13 Heat of formation + Delta-G solvation = -43.480978 kcal Electronic energy + Delta-G solvation = -26717.023894 eV Core-core repulsion = 22860.981503 eV Total energy + Delta-G solvation = -3856.042391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.34154 -40.49751 -38.57330 -36.69034 -35.84152 -34.81004 -33.75272 -32.75160 -30.26564 -29.79216 -29.36615 -28.53685 -27.68336 -25.36989 -23.59157 -21.91840 -21.77576 -21.14941 -20.45702 -18.88046 -18.52041 -18.40489 -17.47511 -17.01104 -16.63773 -16.41458 -16.14676 -16.05801 -15.65372 -15.45698 -15.18297 -14.73235 -14.55593 -14.36161 -14.23548 -14.09517 -13.75850 -13.66530 -13.57504 -13.25861 -13.19342 -13.10686 -12.99085 -12.80689 -12.69634 -12.61894 -12.31001 -12.25692 -11.91418 -11.88612 -11.74686 -11.65483 -10.91932 -10.80522 -10.76785 -10.29324 -10.08170 -9.46342 -9.08121 -8.38741 -6.55478 0.65616 0.74579 1.29963 1.37835 1.38932 1.47315 1.63324 1.81581 2.30536 2.35122 2.51685 2.93270 2.97187 3.49118 3.56384 3.71799 3.76845 3.91781 4.10148 4.19357 4.26068 4.33212 4.39779 4.42851 4.52146 4.53939 4.57646 4.60725 4.68093 4.76563 4.82219 4.87227 4.93402 5.01847 5.12105 5.15201 5.19331 5.20617 5.25719 5.47477 5.59015 5.67100 5.73172 6.02428 6.53006 6.61099 6.81983 7.15464 7.34792 8.69023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.002025 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.798732 B =13820.580128 C =14003.954741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 C -0.332 4.332 4 C 0.606 3.394 5 O -0.582 6.582 6 N -0.712 5.712 7 C 0.146 3.854 8 H 0.091 0.909 9 C -0.140 4.140 10 C -0.110 4.110 11 C -0.409 4.409 12 H 0.172 0.828 13 S 1.297 4.703 14 C -0.489 4.489 15 O -0.920 6.920 16 C -0.103 4.103 17 C 0.078 3.922 18 N -0.336 5.336 19 N -0.337 5.337 20 C 0.267 3.733 21 C -0.556 4.556 22 H 0.053 0.947 23 C 0.022 3.978 24 N -0.917 5.917 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.410 0.590 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.223 0.777 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 31.926 2.338 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.348 4.348 4 C 0.396 3.604 5 O -0.463 6.463 6 N -0.363 5.363 7 C 0.040 3.960 8 H 0.109 0.891 9 C -0.180 4.180 10 C -0.148 4.148 11 C -0.526 4.526 12 H 0.190 0.810 13 S 1.497 4.503 14 C -0.648 4.648 15 O -0.916 6.916 16 C -0.142 4.142 17 C -0.109 4.109 18 N -0.156 5.156 19 N -0.114 5.114 20 C 0.148 3.852 21 C -0.594 4.594 22 H 0.071 0.929 23 C -0.179 4.179 24 N -0.555 5.555 25 Si 0.797 3.203 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.246 0.754 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.167 0.833 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.240 0.760 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.331 30.396 2.426 30.955 hybrid contribution -1.345 -0.919 -1.667 2.331 sum 3.987 29.477 0.759 29.755 Atomic orbital electron populations 1.20541 0.85812 1.03931 1.03990 1.21979 0.95966 0.86717 0.94442 1.19989 0.93244 0.93190 1.28337 1.17128 0.85147 0.83826 0.74323 1.90665 1.17835 1.84695 1.53116 1.45624 1.09773 1.05364 1.75531 1.22008 0.99099 0.79186 0.95678 0.89051 1.22767 1.00986 0.96550 0.97657 1.22132 1.01518 0.95232 0.95962 1.28270 1.15680 1.05860 1.02811 0.81047 1.69617 0.84752 0.87271 1.08655 1.27668 1.10118 1.16194 1.10809 1.93037 1.60763 1.69090 1.68721 1.22336 0.97421 0.91538 1.02858 1.24470 0.97656 0.91637 0.97111 1.77095 0.98371 1.14371 1.25748 1.49113 1.03340 1.07776 1.51216 1.19380 0.95233 0.72300 0.98283 1.21352 1.48051 0.98541 0.91448 0.92920 1.25769 0.93785 0.95916 1.02456 1.69999 1.44703 1.07617 1.33159 0.85371 0.78867 0.77656 0.78425 1.19045 1.19774 1.19762 0.89727 0.88119 0.91114 0.75397 0.93143 0.92577 0.89245 0.93611 0.83336 0.87314 0.91490 0.86511 0.91160 0.76044 0.93201 0.95145 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.20 9.57 71.24 0.68 -2.52 16 2 C 0.14 6.13 7.01 42.15 0.30 6.43 16 3 C -0.33 -12.29 6.13 -20.15 -0.12 -12.41 16 4 C 0.61 19.98 7.81 86.67 0.68 20.66 16 5 O -0.58 -22.04 14.52 -4.04 -0.06 -22.10 16 6 N -0.71 -17.10 5.19 -439.68 -2.28 -19.38 16 7 C 0.15 2.89 3.21 46.28 0.15 3.04 16 8 H 0.09 2.00 7.62 -2.39 -0.02 1.98 16 9 C -0.14 -3.03 6.53 31.74 0.21 -2.82 16 10 C -0.11 -1.58 6.13 31.39 0.19 -1.39 16 11 C -0.41 -3.16 3.47 31.32 0.11 -3.05 16 12 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 13 S 1.30 9.78 12.97 -56.49 -0.73 9.05 16 14 C -0.49 -2.37 10.37 113.37 1.18 -1.19 16 15 O -0.92 -21.95 17.89 -148.98 -2.66 -24.61 16 16 C -0.10 -1.20 5.99 31.67 0.19 -1.01 16 17 C 0.08 2.71 11.50 85.65 0.99 3.70 16 18 N -0.34 -14.92 12.50 -56.28 -0.70 -15.63 16 19 N -0.34 -16.00 3.56 -336.69 -1.20 -17.20 16 20 C 0.27 14.06 5.97 85.63 0.51 14.57 16 21 C -0.56 -30.99 9.39 25.60 0.24 -30.75 16 22 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 23 C 0.02 1.21 5.46 84.66 0.46 1.67 16 24 N -0.92 -51.85 13.29 21.45 0.28 -51.56 16 25 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.10 3.61 6.50 -2.39 -0.02 3.60 16 31 H 0.07 2.65 7.05 -2.39 -0.02 2.63 16 32 H 0.41 7.95 7.50 -92.71 -0.69 7.25 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.05 0.76 6.48 -2.39 -0.02 0.74 16 37 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.62 7.04 -2.39 -0.02 0.60 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.96 7.48 -2.39 -0.02 0.94 16 42 H 0.22 5.19 7.50 -2.91 -0.02 5.17 16 43 H 0.05 2.64 7.02 -2.39 -0.02 2.62 16 44 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -83.54 382.89 0.74 -82.79 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.32 Total: 18.82 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.75 Total: -5.07 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.90 Total: -103.77 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.72 Total: -46.72 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 9.78 SS G_CDS: -0.73 Total: 9.05 kcal Total: -83.54 0.74 -82.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413867021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.311 kcal (2) G-P(sol) polarization free energy of solvation -83.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds