Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30181 * 126.80195 * 2 1 4 4 O 1.20918 * 111.60525 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56946 * 359.76733 * 4 3 2 6 6 C 1.35448 * 106.44571 * 0.37546 * 5 4 3 7 7 C 1.50699 * 128.01110 * 179.91344 * 6 5 4 8 8 N 1.46901 * 109.46848 * 104.35566 * 7 6 5 9 9 C 1.48555 * 111.00001 * 284.75296 * 8 7 6 10 10 C 1.54385 * 104.59581 * 200.95987 * 9 8 7 11 11 C 1.54262 * 105.05901 * 23.85763 * 10 9 8 12 12 H 1.09001 * 110.32251 * 241.00317 * 11 10 9 13 13 N 1.46495 * 110.32331 * 118.89127 * 11 10 9 14 14 C 1.34782 * 119.99613 * 86.45375 * 13 11 10 15 15 O 1.21272 * 120.00434 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99640 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.46831 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99962 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00074 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99817 * 180.27432 * 18 17 16 21 21 N 1.31624 * 120.00603 * 359.73202 * 20 18 17 22 22 Si 1.86807 * 119.99678 * 179.72592 * 20 18 17 23 23 H 1.48498 * 109.47036 * 60.00469 * 22 20 18 24 24 H 1.48503 * 109.46830 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47321 * 299.99871 * 22 20 18 26 26 C 1.48568 * 110.99880 * 169.33789 * 8 7 6 27 27 H 1.09003 * 110.40595 * 40.26008 * 26 8 7 28 28 C 1.52998 * 110.41112 * 277.81831 * 26 8 7 29 29 H 1.09008 * 109.46814 * 274.92935 * 1 2 3 30 30 H 1.09000 * 109.47589 * 34.92833 * 1 2 3 31 31 H 1.09004 * 109.47183 * 154.93164 * 1 2 3 32 32 H 1.07995 * 126.77871 * 180.28742 * 5 4 3 33 33 H 1.08998 * 109.46854 * 344.36078 * 7 6 5 34 34 H 1.08996 * 109.47386 * 224.35453 * 7 6 5 35 35 H 1.09002 * 110.40879 * 82.18466 * 9 8 7 36 36 H 1.08993 * 110.51611 * 319.79261 * 9 8 7 37 37 H 1.08998 * 110.32769 * 264.95969 * 10 9 8 38 38 H 1.09005 * 110.31802 * 142.75167 * 10 9 8 39 39 H 0.97003 * 120.00648 * 266.45455 * 13 11 10 40 40 H 1.08999 * 109.46884 * 60.00563 * 16 14 13 41 41 H 1.09003 * 109.47174 * 300.00177 * 16 14 13 42 42 H 0.96998 * 120.00551 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.47438 * 304.82632 * 28 26 8 44 44 H 1.09006 * 109.47068 * 64.82385 * 28 26 8 45 45 H 1.09000 * 109.46927 * 184.82498 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 2.3540 -1.1320 -0.0007 7 6 1.9591 -2.5863 -0.0002 8 7 1.4934 -2.9668 1.3400 9 6 2.6355 -3.1155 2.2783 10 6 2.0904 -4.0040 3.4170 11 6 0.9217 -4.7899 2.7878 12 1 -0.0106 -4.5594 3.3034 13 7 1.1893 -6.2292 2.8409 14 6 0.8547 -6.9367 3.9382 15 8 0.3317 -6.3820 4.8813 16 6 1.1294 -8.4175 3.9927 17 16 0.5700 -9.0768 5.5828 18 6 0.9999 -10.7733 5.3789 19 1 1.4658 -11.1061 4.4632 20 6 0.7350 -11.6831 6.3932 21 7 0.1675 -11.2776 7.5095 22 14 1.1838 -13.4831 6.1740 23 1 2.6476 -13.6052 5.9558 24 1 0.7994 -14.2409 7.3919 25 1 0.4606 -14.0342 4.9999 26 6 0.8588 -4.3100 1.3218 27 1 1.4191 -4.9863 0.6760 28 6 -0.5948 -4.2072 0.8558 29 1 -0.3633 0.0883 1.0240 30 1 -0.3634 0.8425 -0.5884 31 1 -0.3634 -0.9309 -0.4354 32 1 4.5339 -1.1533 0.0092 33 1 2.8202 -3.1967 -0.2724 34 1 1.1580 -2.7456 -0.7220 35 1 2.9376 -2.1428 2.6665 36 1 3.4750 -3.6039 1.7837 37 1 1.7316 -3.3865 4.2404 38 1 2.8633 -4.6892 3.7655 39 1 1.6073 -6.6731 2.0865 40 1 2.1996 -8.5927 3.8827 41 1 0.5945 -8.9163 3.1845 42 1 -0.0173 -11.9133 8.2184 43 1 -1.1287 -3.4954 1.4854 44 1 -0.6213 -3.8676 -0.1796 45 1 -1.0701 -5.1854 0.9297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479697713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = 3.164243 kcal Electronic energy + Delta-G solvation = -26546.744535 eV Core-core repulsion = 22692.724832 eV Total energy + Delta-G solvation = -3854.019703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.84688 -41.19496 -39.68264 -36.46143 -35.14288 -34.57401 -33.40261 -32.40758 -31.75068 -30.20246 -29.48591 -27.68157 -26.76986 -26.08113 -23.01746 -22.23524 -22.14737 -21.53078 -21.05165 -19.77502 -18.53023 -18.37994 -17.81632 -17.60872 -16.86916 -16.68510 -16.27350 -16.07784 -15.98983 -15.49954 -15.16112 -14.83129 -14.68876 -14.43165 -14.17457 -14.13651 -13.84431 -13.61308 -13.47072 -13.21159 -13.16063 -13.00407 -12.86264 -12.76376 -12.63225 -12.51128 -12.29887 -12.14595 -11.86495 -11.74408 -11.63095 -11.12033 -10.94031 -10.75569 -10.38912 -10.26106 -10.09621 -9.49051 -8.65540 -8.33537 -6.11579 0.62026 1.25189 1.29485 1.44497 1.47892 1.57218 1.62938 2.22837 2.29232 2.46530 3.00480 3.02415 3.32509 3.35854 3.44854 3.67004 3.71117 3.97861 4.00995 4.03668 4.18465 4.26176 4.31082 4.32814 4.47546 4.52711 4.57887 4.61399 4.65558 4.72023 4.76634 4.87055 4.89686 4.92277 5.02049 5.02952 5.07476 5.13035 5.31230 5.39455 5.42423 5.44019 5.86383 6.01069 6.20438 6.51925 7.07645 7.27380 7.40111 8.75256 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.001853 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.991168 B =15109.572360 C =15248.852318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.024 3.976 3 N -0.409 5.409 4 O 0.081 5.919 5 C -0.044 4.044 6 C -0.199 4.199 7 C 0.124 3.876 8 N -0.508 5.508 9 C 0.045 3.955 10 C -0.136 4.136 11 C 0.146 3.854 12 H 0.071 0.929 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.068 3.932 27 H 0.083 0.917 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 18.207 -22.865 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 N -0.118 5.118 4 O 0.020 5.980 5 C -0.126 4.126 6 C -0.203 4.203 7 C -0.003 4.003 8 N -0.233 5.233 9 C -0.082 4.082 10 C -0.175 4.175 11 C 0.040 3.960 12 H 0.089 0.911 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.040 4.040 27 H 0.101 0.899 28 C -0.193 4.193 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.267 0.733 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.579 20.847 -20.998 30.110 hybrid contribution 1.320 -3.041 -0.960 3.452 sum 6.899 17.806 -21.958 29.100 Atomic orbital electron populations 1.20166 0.85050 1.04142 1.03416 1.23922 0.99958 0.88572 1.01013 1.73863 0.90179 1.25613 1.22150 1.84779 1.21175 1.24350 1.67716 1.26537 1.01897 0.82873 1.01258 1.21248 0.92093 0.97453 1.09553 1.20477 1.01092 0.88049 0.90729 1.65307 1.24320 1.25392 1.08244 1.23046 0.92756 0.99510 0.92917 1.22699 0.97799 0.98467 0.98534 1.21676 0.98485 0.79010 0.96818 0.91088 1.45811 1.63279 1.08657 1.18179 1.20047 0.77055 0.88197 0.82474 1.90702 1.43622 1.72137 1.37673 1.23371 1.06132 0.94902 1.03594 1.85615 1.81085 1.07574 1.18327 1.23173 1.46865 0.93428 1.05920 0.89820 1.26133 0.94312 1.04849 0.93946 1.70175 1.40970 1.37198 1.06439 0.85013 0.79183 0.75823 0.78035 1.18617 1.20549 1.18615 1.22745 0.97586 0.90129 0.93539 0.89925 1.21722 0.93533 1.02026 1.02063 0.90438 0.90917 0.88583 0.73295 0.90725 0.88136 0.90516 0.91396 0.92217 0.91252 0.74679 0.87190 0.87130 0.92037 0.92604 0.90438 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.39 71.23 0.74 -0.19 16 2 C 0.02 0.41 7.33 43.58 0.32 0.73 16 3 N -0.41 -8.56 12.07 -49.55 -0.60 -9.16 16 4 O 0.08 1.39 11.20 71.63 0.80 2.19 16 5 C -0.04 -0.44 12.26 67.17 0.82 0.39 16 6 C -0.20 -2.42 5.51 -19.73 -0.11 -2.53 16 7 C 0.12 1.05 5.23 85.56 0.45 1.50 16 8 N -0.51 -6.39 5.00 -861.24 -4.31 -10.70 16 9 C 0.05 0.62 6.13 86.45 0.53 1.15 16 10 C -0.14 -2.75 6.78 31.49 0.21 -2.54 16 11 C 0.15 3.05 2.91 45.89 0.13 3.18 16 12 H 0.07 1.96 7.36 -2.39 -0.02 1.95 16 13 N -0.70 -15.90 5.04 -438.30 -2.21 -18.11 16 14 C 0.54 18.72 7.84 87.66 0.69 19.40 16 15 O -0.56 -25.45 15.56 -3.00 -0.05 -25.50 16 16 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 17 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 18 C -0.55 -30.67 9.50 67.95 0.65 -30.02 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -55.66 13.22 21.65 0.29 -55.38 16 22 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 C 0.07 0.89 2.58 45.06 0.12 1.00 16 27 H 0.08 0.73 7.59 -2.39 -0.02 0.71 16 28 C -0.14 -1.73 9.30 71.98 0.67 -1.06 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.92 8.03 -2.39 -0.02 0.90 16 32 H 0.25 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.07 0.35 7.75 -2.39 -0.02 0.33 16 34 H 0.10 0.68 7.17 -2.39 -0.02 0.67 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.65 7.74 -2.39 -0.02 0.63 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.52 7.95 -2.38 -0.02 1.50 16 39 H 0.42 6.24 8.34 -92.71 -0.77 5.47 16 40 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 41 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.67 7.39 -2.38 -0.02 0.65 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -80.16 389.60 1.14 -79.02 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.23 Total: 14.44 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 6.12 Total: -12.24 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -6.83 Total: -93.35 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.76 Total: -23.31 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.16 1.14 -79.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479697713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.183 kcal (2) G-P(sol) polarization free energy of solvation -80.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds