Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30258 * 125.61762 * 2 1 4 4 C 1.34481 * 108.69732 * 179.73882 * 3 2 1 5 5 C 1.50703 * 126.16339 * 180.27253 * 4 3 2 6 6 C 1.34328 * 107.66762 * 0.38819 * 4 3 2 7 7 C 1.50706 * 126.43868 * 179.87974 * 6 4 3 8 8 N 1.46897 * 109.47037 * 89.71757 * 7 6 4 9 9 C 1.46901 * 110.99893 * 179.97438 * 8 7 6 10 10 H 1.09004 * 110.91512 * 37.44282 * 9 8 7 11 11 C 1.55151 * 111.00682 * 161.34738 * 9 8 7 12 12 C 1.54338 * 103.02507 * 153.37920 * 11 9 8 13 13 N 1.47021 * 107.26155 * 338.14263 * 12 11 9 14 14 C 1.34781 * 125.64992 * 178.84864 * 13 12 11 15 15 O 1.21274 * 120.00344 * 179.69253 * 14 13 12 16 16 C 1.50701 * 119.99423 * 359.69048 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46807 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46906 * 300.00462 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47422 * 108.70588 * 358.58342 * 13 12 11 27 27 O 1.33968 * 125.61945 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47393 * 270.02459 * 1 2 3 29 29 H 1.09003 * 109.47252 * 30.02329 * 1 2 3 30 30 H 1.08994 * 109.47257 * 150.02550 * 1 2 3 31 31 H 1.09004 * 109.46695 * 270.14015 * 5 4 3 32 32 H 1.08996 * 109.47546 * 30.14142 * 5 4 3 33 33 H 1.09000 * 109.46870 * 150.14584 * 5 4 3 34 34 H 1.08995 * 109.47078 * 329.71172 * 7 6 4 35 35 H 1.09004 * 109.46855 * 209.71551 * 7 6 4 36 36 H 1.00903 * 111.00110 * 303.94870 * 8 7 6 37 37 H 1.09003 * 110.72492 * 271.93984 * 11 9 8 38 38 H 1.09003 * 110.72257 * 35.03420 * 11 9 8 39 39 H 1.08996 * 109.99183 * 218.66499 * 12 11 9 40 40 H 1.08998 * 109.77679 * 97.49207 * 12 11 9 41 41 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 42 42 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 43 43 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.37421 * 143.19407 * 26 13 12 45 45 H 1.08997 * 110.36947 * 265.51777 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0058 5 6 4.7570 1.5727 0.0137 6 6 3.5697 -0.6756 0.0008 7 6 4.7937 -1.5549 0.0018 8 7 5.1904 -1.8403 1.3871 9 6 6.3827 -2.6975 1.4273 10 1 7.0779 -2.4348 0.6299 11 6 7.0740 -2.6241 2.8144 12 6 7.7902 -3.9872 2.9186 13 7 7.1114 -4.9085 1.9956 14 6 7.4516 -6.1942 1.7774 15 8 6.8143 -6.8656 0.9940 16 6 8.6242 -6.7975 2.5070 17 16 8.8251 -8.5241 2.0026 18 6 10.2224 -8.9678 2.9800 19 1 10.6763 -8.2392 3.6353 20 6 10.7399 -10.2537 2.9076 21 7 10.1870 -11.1416 2.1084 22 14 12.2218 -10.7239 3.9432 23 1 12.5754 -12.1429 3.6856 24 1 13.3711 -9.8540 3.5862 25 1 11.8962 -10.5486 5.3814 26 6 5.9928 -4.1949 1.3530 27 8 2.2872 -1.0890 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 5.0512 1.7949 -1.0122 32 1 4.5112 2.5005 0.5302 33 1 5.5802 1.0773 0.5285 34 1 5.6083 -1.0442 -0.5116 35 1 4.5699 -2.4898 -0.5120 36 1 5.3410 -0.9864 1.9033 37 1 7.7925 -1.8050 2.8444 38 1 6.3350 -2.5161 3.6084 39 1 7.7223 -4.3669 3.9381 40 1 8.8357 -3.8775 2.6305 41 1 8.4466 -6.7508 3.5815 42 1 9.5291 -6.2406 2.2637 43 1 10.5488 -12.0402 2.0576 44 1 5.8891 -4.5088 0.3143 45 1 5.0659 -4.3730 1.8982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480611382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = -10.868737 kcal Electronic energy + Delta-G solvation = -25908.841604 eV Core-core repulsion = 22054.213385 eV Total energy + Delta-G solvation = -3854.628218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.69117 -39.91060 -37.83328 -35.82828 -35.38733 -33.15493 -32.43039 -31.17723 -29.77716 -29.66367 -28.66471 -26.91888 -25.47325 -24.40852 -22.96013 -22.09127 -21.12559 -20.88588 -19.37017 -17.77183 -17.29140 -17.04567 -16.73814 -16.56464 -15.61230 -15.41190 -14.92169 -14.82736 -14.78386 -14.46451 -13.96361 -13.87816 -13.78024 -13.62142 -13.45762 -13.35866 -13.14618 -13.06018 -12.73380 -12.63117 -12.52138 -12.31016 -11.83754 -11.78885 -11.43599 -11.24797 -11.11924 -11.04233 -11.03764 -10.82786 -10.77440 -9.83040 -9.43659 -9.15292 -9.06077 -8.88131 -8.50329 -8.24028 -6.50563 -6.21575 -3.92468 1.02400 2.22026 2.29635 2.86520 3.05765 3.23165 3.24658 3.28713 3.53244 3.60332 3.78456 4.07542 4.20401 4.30616 4.38854 4.41527 4.57893 4.72120 4.81188 4.92602 4.92692 5.01668 5.06533 5.09357 5.12649 5.13398 5.17697 5.27578 5.30706 5.43162 5.49608 5.59112 5.62472 5.66719 5.72565 5.74092 5.83075 5.93436 5.97206 6.13165 6.31885 6.50603 6.76439 7.38749 7.58904 7.65666 8.34830 8.55050 9.23378 10.85788 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.001743 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.747883 B =16063.076880 C =16645.128976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.193 3.807 3 N -0.485 5.485 4 C -0.008 4.008 5 C -0.071 4.071 6 C -0.041 4.041 7 C 0.142 3.858 8 N -0.674 5.674 9 C 0.072 3.928 10 H 0.067 0.933 11 C -0.130 4.130 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.549 3.451 15 O -0.515 6.515 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.119 3.881 27 O -0.190 6.190 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.349 0.651 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 27.888 -1.837 30.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.216 5.216 4 C -0.129 4.129 5 C -0.129 4.129 6 C -0.095 4.095 7 C 0.013 3.987 8 N -0.307 5.307 9 C -0.039 4.039 10 H 0.085 0.915 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.365 5.365 14 C 0.337 3.663 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.005 4.005 27 O -0.077 6.077 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.558 26.631 -3.027 30.501 hybrid contribution 2.583 0.470 1.386 2.968 sum -11.975 27.101 -1.641 29.674 Atomic orbital electron populations 1.20274 0.81253 1.05154 1.04825 1.26258 0.96477 0.78665 0.99978 1.70357 1.01560 1.30377 1.19265 1.21538 0.93540 0.92067 1.05710 1.20120 0.91636 0.98148 1.02973 1.22913 0.83776 0.94220 1.08589 1.20314 0.89053 0.98329 0.90959 1.60291 1.36261 1.21752 1.12354 1.22702 0.89887 0.93519 0.97752 0.91546 1.22790 0.99973 0.97102 0.96982 1.21933 0.96839 0.88618 0.94476 1.48437 1.32586 1.10969 1.44528 1.20026 0.85021 0.79222 0.81987 1.90711 1.53426 1.59187 1.35545 1.23507 0.97736 1.05628 1.02836 1.85409 1.40758 0.99256 1.57963 1.22819 1.16303 1.00041 1.29262 0.90975 1.24994 0.97594 0.95292 0.95675 1.70011 1.39935 1.04572 1.35735 0.86222 0.81521 0.77608 0.80134 1.20795 1.19945 1.19938 1.22080 0.90311 0.89068 0.99054 1.84418 1.16435 1.37413 1.69398 0.88800 0.88144 0.89201 0.90623 0.90353 0.91073 0.91241 0.88534 0.83178 0.89918 0.89445 0.90941 0.91145 0.89270 0.89309 0.92119 0.90704 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.10 16 2 C 0.19 1.81 8.34 -12.95 -0.11 1.70 16 3 N -0.48 -5.20 11.29 -7.35 -0.08 -5.28 16 4 C -0.01 -0.07 7.11 -82.81 -0.59 -0.66 16 5 C -0.07 -0.43 10.05 36.01 0.36 -0.07 16 6 C -0.04 -0.39 6.90 -35.68 -0.25 -0.64 16 7 C 0.14 1.07 5.71 -4.97 -0.03 1.04 16 8 N -0.67 -5.07 6.36 -105.72 -0.67 -5.75 16 9 C 0.07 0.59 3.32 -65.56 -0.22 0.37 16 10 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 11 C -0.13 -0.93 6.42 -24.89 -0.16 -1.09 16 12 C 0.11 1.08 6.49 -3.06 -0.02 1.06 16 13 N -0.63 -9.06 3.33 -170.52 -0.57 -9.63 16 14 C 0.55 10.73 7.87 -10.98 -0.09 10.65 16 15 O -0.51 -12.15 16.12 5.56 0.09 -12.06 16 16 C -0.15 -3.02 5.35 36.01 0.19 -2.83 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.12 1.46 6.55 -2.53 -0.02 1.44 16 27 O -0.19 -2.04 10.78 5.37 0.06 -1.98 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.30 7.80 -51.93 -0.40 -0.11 16 34 H 0.07 0.39 7.76 -51.93 -0.40 -0.01 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.35 2.14 8.52 -39.29 -0.33 1.81 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -37.16 394.15 -9.09 -46.25 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.01 Total: -2.57 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.34 Total: -1.92 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.59 Total: -46.14 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.15 Total: -14.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.16 -9.09 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480611382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.380 kcal (2) G-P(sol) polarization free energy of solvation -37.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds