Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30178 * 126.79871 * 2 1 4 4 O 1.20929 * 111.60454 * 180.25003 * 3 2 1 5 5 C 1.34038 * 111.56618 * 359.74863 * 4 3 2 6 6 C 1.50695 * 126.77952 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44498 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00456 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47519 * 90.00037 * 8 7 5 10 10 C 1.46897 * 111.00012 * 179.97438 * 9 8 7 11 11 H 1.08995 * 110.64440 * 31.86237 * 10 9 8 12 12 C 1.55156 * 110.71839 * 155.00108 * 10 9 8 13 13 C 1.54908 * 101.58336 * 153.86686 * 12 10 9 14 14 N 1.47422 * 104.83059 * 322.98859 * 13 12 10 15 15 C 1.34781 * 125.65200 * 204.09240 * 14 13 12 16 16 O 1.21274 * 120.00344 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99423 * 0.02562 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47027 * 108.70246 * 24.35933 * 14 13 12 28 28 H 1.09004 * 109.47050 * 270.16177 * 1 2 3 29 29 H 1.08995 * 109.47246 * 30.16650 * 1 2 3 30 30 H 1.09005 * 109.46773 * 150.16842 * 1 2 3 31 31 H 1.09001 * 109.47369 * 270.00289 * 6 5 4 32 32 H 1.09005 * 109.46717 * 29.99709 * 6 5 4 33 33 H 1.08997 * 109.47447 * 149.99779 * 6 5 4 34 34 H 1.09002 * 109.47280 * 329.99689 * 8 7 5 35 35 H 1.09003 * 109.47014 * 209.99977 * 8 7 5 36 36 H 1.00900 * 110.99580 * 56.04187 * 9 8 7 37 37 H 1.09005 * 111.00410 * 35.78816 * 12 10 9 38 38 H 1.09007 * 111.03810 * 271.95462 * 12 10 9 39 39 H 1.09000 * 110.36458 * 204.15429 * 13 12 10 40 40 H 1.08994 * 110.46035 * 81.87744 * 13 12 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.88355 * 118.13246 * 27 14 13 45 45 H 1.09008 * 109.88094 * 239.29537 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6066 -0.0034 6 6 4.9021 -1.3694 -0.0088 7 6 2.3540 -1.1319 0.0038 8 6 1.9592 -2.5863 0.0077 9 7 1.8382 -3.0572 1.3939 10 6 1.4531 -4.4742 1.4368 11 1 1.8612 -5.0094 0.5795 12 6 1.9173 -5.1292 2.7645 13 6 0.8933 -6.2814 2.9176 14 7 -0.3787 -5.7239 2.4231 15 6 -1.6099 -6.1543 2.7630 16 8 -2.5909 -5.6189 2.2921 17 6 -1.7674 -7.3008 3.7283 18 16 -3.5274 -7.6400 3.9802 19 6 -3.4207 -8.9821 5.1169 20 1 -2.4546 -9.3413 5.4392 21 6 -4.5785 -9.5777 5.5981 22 7 -5.7561 -9.1402 5.2048 23 14 -4.4654 -11.0010 6.8026 24 1 -4.4151 -12.2816 6.0524 25 1 -3.2355 -10.8590 7.6226 26 1 -5.6557 -10.9938 7.6904 27 6 -0.0818 -4.6249 1.4928 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8884 -0.5164 30 1 -0.3633 -0.8916 -0.5112 31 1 5.2103 -1.5550 -1.0377 32 1 5.6686 -0.7847 0.5002 33 1 4.7677 -2.3199 0.5073 34 1 2.7202 -3.1707 -0.5095 35 1 1.0024 -2.7044 -0.5010 36 1 1.1852 -2.4894 1.9129 37 1 1.8416 -4.4263 3.5943 38 1 2.9320 -5.5175 2.6755 39 1 0.7998 -6.5691 3.9648 40 1 1.1916 -7.1389 2.3145 41 1 -1.3074 -7.0393 4.6813 42 1 -1.2814 -8.1877 3.3216 43 1 -6.5651 -9.5567 5.5408 44 1 -0.4693 -4.8628 0.5022 45 1 -0.5302 -3.7001 1.8563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480611583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = 24.791177 kcal Electronic energy + Delta-G solvation = -26217.236925 eV Core-core repulsion = 22364.155037 eV Total energy + Delta-G solvation = -3853.081889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.23846 -39.98322 -37.93614 -36.29587 -34.46273 -33.65396 -32.44738 -31.02800 -29.70130 -29.07346 -28.67814 -27.49943 -25.67320 -25.36534 -23.26140 -21.85705 -21.17253 -20.45873 -19.40150 -18.00195 -17.77771 -17.26424 -16.73340 -16.65709 -15.82465 -15.03665 -14.97716 -14.97043 -14.81905 -14.03050 -13.96257 -13.86756 -13.80159 -13.65837 -13.46415 -13.32714 -13.03498 -12.83465 -12.67317 -12.60682 -12.54908 -12.41929 -11.88729 -11.83352 -11.69728 -11.26292 -11.08424 -11.07232 -11.03771 -10.77752 -10.22267 -9.83952 -9.57739 -9.46748 -9.08448 -8.91401 -8.54894 -8.25886 -6.52746 -6.23482 -3.94447 1.11716 1.81982 2.76331 2.85568 3.01839 3.20958 3.24122 3.28888 3.55946 3.77100 3.87421 4.09673 4.17596 4.23005 4.34583 4.43638 4.59339 4.75979 4.87945 4.98585 4.99125 5.02666 5.04565 5.08481 5.11613 5.12478 5.17351 5.30841 5.38564 5.41769 5.44132 5.50467 5.58038 5.58575 5.59207 5.72435 5.80950 5.82636 5.91420 6.10676 6.34601 6.52799 6.84652 7.57507 7.60978 7.96843 8.33356 8.50949 9.21732 10.83939 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.001869 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.667521 B =14974.297147 C =15687.260178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.026 3.974 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.010 4.010 6 C -0.075 4.075 7 C -0.204 4.204 8 C 0.136 3.864 9 N -0.671 5.671 10 C 0.076 3.924 11 H 0.095 0.905 12 C -0.118 4.118 13 C 0.098 3.902 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.282 1.282 27 C 0.084 3.916 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.348 0.652 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.450 13.570 -11.079 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.074 4.074 6 C -0.132 4.132 7 C -0.208 4.208 8 C 0.007 3.993 9 N -0.302 5.302 10 C -0.035 4.035 11 H 0.113 0.887 12 C -0.156 4.156 13 C -0.025 4.025 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.197 1.197 26 H -0.207 1.207 27 C -0.041 4.041 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.163 15.526 -11.680 29.474 hybrid contribution 0.122 -2.208 1.056 2.451 sum 22.285 13.318 -10.624 28.051 Atomic orbital electron populations 1.20211 0.85909 1.03912 1.03715 1.23500 0.98932 0.88572 1.02298 1.73869 0.89239 1.23907 1.20467 1.84812 1.21693 1.22643 1.67825 1.24302 0.98312 0.83629 1.01182 1.20382 0.89842 0.99110 1.03903 1.20769 0.91743 0.96921 1.11392 1.20157 1.00715 0.88212 0.90248 1.60680 1.54768 1.02307 1.12415 1.22688 0.92201 0.89167 0.99438 0.88657 1.22776 0.98709 0.96859 0.97293 1.22359 0.83106 0.96478 1.00597 1.48423 1.05703 1.35401 1.46684 1.20078 0.80869 0.83924 0.81517 1.90707 1.37045 1.57351 1.53918 1.23503 1.08211 0.97969 0.99978 1.85409 0.95152 1.43788 1.59146 1.22851 0.95481 1.19324 1.30649 0.90905 1.25003 0.94496 0.97487 0.96635 1.70020 0.97437 1.40416 1.42384 0.86158 0.77886 0.81272 0.80131 1.20258 1.19674 1.20741 1.22619 0.96022 0.91314 0.94181 0.89901 0.90383 0.90024 0.89577 0.89867 0.88322 0.89437 0.93324 0.83284 0.90036 0.89490 0.90057 0.91255 0.89259 0.89263 0.92168 0.91686 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.00 0.37 -0.22 16 2 C 0.03 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.15 12.07 33.42 0.40 -3.75 16 4 O 0.09 0.94 11.20 17.18 0.19 1.13 16 5 C -0.01 -0.07 7.49 -35.31 -0.26 -0.34 16 6 C -0.08 -0.29 10.24 36.00 0.37 0.08 16 7 C -0.20 -1.62 5.83 -104.42 -0.61 -2.23 16 8 C 0.14 0.85 5.80 -4.97 -0.03 0.83 16 9 N -0.67 -4.60 6.37 -106.05 -0.68 -5.27 16 10 C 0.08 0.55 3.27 -65.88 -0.22 0.34 16 11 H 0.10 0.60 7.82 -51.93 -0.41 0.19 16 12 C -0.12 -0.86 6.77 -24.58 -0.17 -1.03 16 13 C 0.10 0.96 6.69 -2.53 -0.02 0.95 16 14 N -0.62 -8.60 3.33 -170.52 -0.57 -9.16 16 15 C 0.55 10.45 7.87 -10.98 -0.09 10.36 16 16 O -0.52 -11.92 16.19 5.56 0.09 -11.83 16 17 C -0.15 -2.97 5.16 36.01 0.19 -2.78 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 23 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.08 0.92 6.60 -3.06 -0.02 0.90 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.34 8.05 -51.93 -0.42 -0.08 16 34 H 0.09 0.44 8.02 -51.93 -0.42 0.03 16 35 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 36 H 0.35 2.67 8.04 -39.29 -0.32 2.36 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.75 7.50 -51.92 -0.39 0.36 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -35.79 391.72 -8.92 -44.71 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.89 Total: -2.36 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.88 Total: -6.38 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.11 Total: -43.54 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.28 Total: -10.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.79 -8.92 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480611583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.502 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds