Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30178 * 126.79871 * 2 1 4 4 O 1.20929 * 111.60454 * 180.25003 * 3 2 1 5 5 C 1.34038 * 111.56618 * 359.74863 * 4 3 2 6 6 C 1.50695 * 126.77952 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44498 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00456 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47519 * 90.00037 * 8 7 5 10 10 C 1.46897 * 111.00012 * 179.97438 * 9 8 7 11 11 H 1.08995 * 110.64440 * 31.86237 * 10 9 8 12 12 C 1.55156 * 110.71839 * 155.00108 * 10 9 8 13 13 C 1.54908 * 101.58336 * 153.86686 * 12 10 9 14 14 N 1.47422 * 104.83059 * 322.98859 * 13 12 10 15 15 C 1.34781 * 125.65200 * 204.09240 * 14 13 12 16 16 O 1.21274 * 120.00344 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99423 * 0.02562 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47027 * 108.70246 * 24.35933 * 14 13 12 28 28 H 1.09004 * 109.47050 * 270.16177 * 1 2 3 29 29 H 1.08995 * 109.47246 * 30.16650 * 1 2 3 30 30 H 1.09005 * 109.46773 * 150.16842 * 1 2 3 31 31 H 1.09001 * 109.47369 * 270.00289 * 6 5 4 32 32 H 1.09005 * 109.46717 * 29.99709 * 6 5 4 33 33 H 1.08997 * 109.47447 * 149.99779 * 6 5 4 34 34 H 1.09002 * 109.47280 * 329.99689 * 8 7 5 35 35 H 1.09003 * 109.47014 * 209.99977 * 8 7 5 36 36 H 1.00900 * 110.99580 * 56.04187 * 9 8 7 37 37 H 1.09005 * 111.00410 * 35.78816 * 12 10 9 38 38 H 1.09007 * 111.03810 * 271.95462 * 12 10 9 39 39 H 1.09000 * 110.36458 * 204.15429 * 13 12 10 40 40 H 1.08994 * 110.46035 * 81.87744 * 13 12 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 42 42 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.88355 * 118.13246 * 27 14 13 45 45 H 1.09008 * 109.88094 * 239.29537 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6066 -0.0034 6 6 4.9021 -1.3694 -0.0088 7 6 2.3540 -1.1319 0.0038 8 6 1.9592 -2.5863 0.0077 9 7 1.8382 -3.0572 1.3939 10 6 1.4531 -4.4742 1.4368 11 1 1.8612 -5.0094 0.5795 12 6 1.9173 -5.1292 2.7645 13 6 0.8933 -6.2814 2.9176 14 7 -0.3787 -5.7239 2.4231 15 6 -1.6099 -6.1543 2.7630 16 8 -2.5909 -5.6189 2.2921 17 6 -1.7674 -7.3008 3.7283 18 16 -3.5274 -7.6400 3.9802 19 6 -3.4207 -8.9821 5.1169 20 1 -2.4546 -9.3413 5.4392 21 6 -4.5785 -9.5777 5.5981 22 7 -5.7561 -9.1402 5.2048 23 14 -4.4654 -11.0010 6.8026 24 1 -4.4151 -12.2816 6.0524 25 1 -3.2355 -10.8590 7.6226 26 1 -5.6557 -10.9938 7.6904 27 6 -0.0818 -4.6249 1.4928 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8884 -0.5164 30 1 -0.3633 -0.8916 -0.5112 31 1 5.2103 -1.5550 -1.0377 32 1 5.6686 -0.7847 0.5002 33 1 4.7677 -2.3199 0.5073 34 1 2.7202 -3.1707 -0.5095 35 1 1.0024 -2.7044 -0.5010 36 1 1.1852 -2.4894 1.9129 37 1 1.8416 -4.4263 3.5943 38 1 2.9320 -5.5175 2.6755 39 1 0.7998 -6.5691 3.9648 40 1 1.1916 -7.1389 2.3145 41 1 -1.3074 -7.0393 4.6813 42 1 -1.2814 -8.1877 3.3216 43 1 -6.5651 -9.5567 5.5408 44 1 -0.4693 -4.8628 0.5022 45 1 -0.5302 -3.7001 1.8563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480611583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -0.164724 kcal Electronic energy + Delta-G solvation = -26218.319094 eV Core-core repulsion = 22364.155037 eV Total energy + Delta-G solvation = -3854.164058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.91127 -41.09837 -39.01077 -37.07769 -35.19466 -34.59397 -34.27316 -32.06909 -30.83493 -29.75026 -29.39235 -28.24473 -27.64873 -26.22204 -24.18902 -22.48121 -21.84130 -21.06012 -20.74069 -19.59223 -18.69464 -18.12940 -17.89211 -17.59433 -16.89097 -16.78378 -16.23316 -16.04920 -15.66149 -15.48968 -15.00804 -14.57047 -14.46662 -14.38050 -14.33154 -14.13804 -13.84223 -13.69448 -13.59897 -13.54307 -13.28095 -13.20684 -13.14923 -12.99228 -12.89220 -12.62492 -12.56267 -12.31646 -11.86944 -11.78820 -11.65391 -11.14869 -11.01752 -10.88327 -10.29501 -10.14350 -9.76420 -9.44346 -8.69425 -8.35435 -6.14388 0.52064 1.16207 1.23716 1.42616 1.44815 1.54151 1.56051 2.07380 2.24632 2.26674 2.98748 3.11689 3.22300 3.29572 3.52081 3.55183 3.66629 3.85124 3.93161 4.06824 4.11448 4.22491 4.32121 4.38697 4.40840 4.43864 4.52341 4.60411 4.62444 4.67666 4.76469 4.77982 4.80232 4.82856 4.87926 4.99475 5.12357 5.15935 5.24434 5.32980 5.35751 5.41010 5.96235 6.19024 6.22220 6.36705 7.05615 7.09449 7.32809 8.73828 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.001869 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.667521 B =14974.297147 C =15687.260178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.014 3.986 3 N -0.405 5.405 4 O 0.078 5.922 5 C -0.006 4.006 6 C -0.073 4.073 7 C -0.213 4.213 8 C 0.139 3.861 9 N -0.665 5.665 10 C 0.092 3.908 11 H 0.119 0.881 12 C -0.106 4.106 13 C 0.087 3.913 14 N -0.615 5.615 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.118 4.118 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.257 1.257 26 H -0.278 1.278 27 C 0.078 3.922 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.342 0.658 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.976 11.986 -10.805 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 N -0.114 5.114 4 O 0.017 5.983 5 C -0.070 4.070 6 C -0.130 4.130 7 C -0.217 4.217 8 C 0.011 3.989 9 N -0.295 5.295 10 C -0.019 4.019 11 H 0.136 0.864 12 C -0.144 4.144 13 C -0.035 4.035 14 N -0.350 5.350 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.270 4.270 18 S 0.073 5.927 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.181 1.181 26 H -0.204 1.204 27 C -0.047 4.047 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.783 13.954 -11.415 31.461 hybrid contribution -0.842 -1.628 0.900 2.041 sum 24.941 12.326 -10.516 29.742 Atomic orbital electron populations 1.20259 0.85150 1.04369 1.03929 1.23913 0.99729 0.89070 1.01768 1.73858 0.89956 1.25192 1.22429 1.84764 1.21274 1.24061 1.68207 1.25035 0.99781 0.82823 0.99388 1.20586 0.88087 0.98994 1.05358 1.20966 0.91582 0.97330 1.11835 1.20229 1.01350 0.87410 0.89959 1.60734 1.54118 1.01932 1.12713 1.22661 0.88956 0.89717 1.00518 0.86352 1.22762 0.99294 0.95583 0.96780 1.22754 0.81588 0.98190 1.00956 1.48372 1.05323 1.35326 1.45935 1.19830 0.82054 0.83617 0.81351 1.90682 1.39263 1.58991 1.55956 1.23294 1.02594 0.99534 1.01536 1.85607 1.02635 1.44645 1.59822 1.23185 0.96210 1.19250 1.30586 0.89798 1.26164 0.93903 1.00582 0.98623 1.70191 0.98398 1.42208 1.44009 0.84930 0.78407 0.77135 0.77371 1.19222 1.18060 1.20372 1.22902 0.99085 0.89729 0.92969 0.89755 0.90530 0.88968 0.87719 0.88966 0.87190 0.87263 0.93456 0.83902 0.90684 0.86405 0.89984 0.89195 0.87571 0.87398 0.91992 0.92285 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.39 71.23 0.74 -0.47 16 2 C 0.01 0.26 7.33 43.57 0.32 0.58 16 3 N -0.40 -9.28 12.07 -49.54 -0.60 -9.88 16 4 O 0.08 1.54 11.20 71.65 0.80 2.34 16 5 C -0.01 -0.08 7.49 25.04 0.19 0.11 16 6 C -0.07 -0.34 10.24 71.23 0.73 0.39 16 7 C -0.21 -3.06 5.83 -19.74 -0.12 -3.18 16 8 C 0.14 1.38 5.80 85.56 0.50 1.88 16 9 N -0.66 -7.22 6.37 -489.44 -3.12 -10.34 16 10 C 0.09 1.03 3.27 46.11 0.15 1.18 16 11 H 0.12 0.89 7.82 -2.39 -0.02 0.87 16 12 C -0.11 -1.11 6.77 31.99 0.22 -0.90 16 13 C 0.09 1.42 6.69 86.86 0.58 2.00 16 14 N -0.61 -16.03 3.33 -811.79 -2.70 -18.73 16 15 C 0.54 20.78 7.87 87.66 0.69 21.47 16 16 O -0.57 -27.31 16.19 -3.01 -0.05 -27.36 16 17 C -0.12 -4.77 5.16 71.24 0.37 -4.40 16 18 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 19 C -0.54 -31.03 9.50 67.96 0.65 -30.39 16 20 H 0.08 4.41 7.80 -2.92 -0.02 4.39 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.08 13.22 21.65 0.29 -55.80 16 23 Si 1.00 43.31 29.55 68.60 2.03 45.33 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.08 1.59 6.60 86.73 0.57 2.17 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.15 7.65 -2.38 -0.02 1.13 16 31 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.11 0.30 8.05 -2.39 -0.02 0.28 16 34 H 0.11 0.64 8.02 -2.39 -0.02 0.63 16 35 H 0.05 0.50 7.65 -2.39 -0.02 0.49 16 36 H 0.34 4.66 8.04 -89.69 -0.72 3.94 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.08 1.37 7.48 -2.39 -0.02 1.35 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.11 3.88 7.85 -2.39 -0.02 3.86 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.23 7.50 -2.38 -0.02 1.21 16 Total: -1.00 -82.12 391.72 1.82 -80.30 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.28 Total: 12.34 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 6.05 Total: -8.41 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -6.13 Total: -94.74 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.75 Total: -25.02 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -82.12 1.82 -80.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480611583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.136 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds