Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35456 * 128.00837 * 2 1 4 4 O 1.34033 * 106.44883 * 179.97438 * 3 2 1 5 5 N 1.20928 * 111.56662 * 359.71465 * 4 3 2 6 6 C 1.30172 * 111.60269 * 0.47912 * 5 4 3 7 7 C 1.50696 * 126.80147 * 179.79661 * 6 5 4 8 8 N 1.46899 * 109.47309 * 269.69000 * 7 6 5 9 9 C 1.46847 * 111.00030 * 293.95381 * 8 7 6 10 10 C 1.53034 * 109.52326 * 174.16117 * 9 8 7 11 11 C 1.53117 * 109.28010 * 59.17583 * 10 9 8 12 12 C 1.53119 * 109.16519 * 302.34814 * 11 10 9 13 13 H 1.09004 * 109.50124 * 297.67309 * 12 11 10 14 14 N 1.46498 * 109.50817 * 177.59204 * 12 11 10 15 15 C 1.34777 * 119.99828 * 84.72111 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.46855 * 111.00079 * 169.74292 * 8 7 6 28 28 H 1.09002 * 109.47352 * 270.03690 * 1 2 3 29 29 H 1.08992 * 109.47618 * 30.04104 * 1 2 3 30 30 H 1.09008 * 109.47509 * 150.04174 * 1 2 3 31 31 H 1.08000 * 126.77067 * 359.94677 * 3 2 1 32 32 H 1.08997 * 109.47396 * 149.68648 * 7 6 5 33 33 H 1.08998 * 109.47006 * 29.69058 * 7 6 5 34 34 H 1.08991 * 109.45838 * 54.14472 * 9 8 7 35 35 H 1.09002 * 109.45812 * 294.17252 * 9 8 7 36 36 H 1.08999 * 109.50313 * 299.23815 * 10 9 8 37 37 H 1.08993 * 109.53842 * 179.13986 * 10 9 8 38 38 H 1.08999 * 109.52842 * 182.43981 * 11 10 9 39 39 H 1.09004 * 109.57425 * 62.28323 * 11 10 9 40 40 H 0.97001 * 120.00384 * 265.00558 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.46027 * 65.82420 * 27 8 7 45 45 H 1.09006 * 109.46257 * 305.85734 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5748 0.0006 5 7 3.5877 -0.6345 0.0065 6 6 2.3775 -1.1139 0.0005 7 6 1.9827 -2.5683 0.0007 8 7 1.8548 -3.0411 -1.3843 9 6 0.7375 -2.3758 -2.0665 10 6 0.7244 -2.7820 -3.5419 11 6 0.5781 -4.3026 -3.6463 12 6 1.7272 -4.9715 -2.8869 13 1 2.6762 -4.6975 -3.3479 14 7 1.5628 -6.4265 -2.9334 15 6 2.0220 -7.1230 -3.9920 16 8 2.5757 -6.5459 -4.9037 17 6 1.8474 -8.6190 -4.0428 18 16 2.5636 -9.2583 -5.5772 19 6 2.2293 -10.9768 -5.3781 20 1 1.7195 -11.3289 -4.4935 21 6 2.6204 -11.8780 -6.3587 22 7 3.2414 -11.4489 -7.4371 23 14 2.2667 -13.7000 -6.1473 24 1 0.9403 -14.0180 -6.7345 25 1 3.3163 -14.4914 -6.8381 26 1 2.2621 -14.0389 -4.7015 27 6 1.7112 -4.5019 -1.4305 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8895 -0.5144 30 1 -0.3634 -0.8904 -0.5132 31 1 2.0575 2.1094 -0.0008 32 1 1.0285 -2.6857 0.5142 33 1 2.7462 -3.1520 0.5149 34 1 0.8560 -1.2952 -1.9883 35 1 -0.2016 -2.6729 -1.5997 36 1 1.6576 -2.4731 -4.0127 37 1 -0.1139 -2.3004 -4.0451 38 1 0.6118 -4.6008 -4.6942 39 1 -0.3732 -4.6088 -3.2110 40 1 1.1199 -6.8882 -2.2043 41 1 2.3521 -9.0729 -3.1899 42 1 0.7854 -8.8623 -4.0081 43 1 3.5150 -12.0787 -8.1221 44 1 0.7675 -4.7888 -0.9667 45 1 2.5369 -4.9653 -0.8904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481531754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = 24.097198 kcal Electronic energy + Delta-G solvation = -26490.915098 eV Core-core repulsion = 22637.803116 eV Total energy + Delta-G solvation = -3853.111982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.28612 -40.01830 -38.58907 -35.93250 -34.31159 -33.24794 -32.42064 -32.21049 -30.52458 -28.71851 -28.38029 -27.33303 -25.47732 -23.76205 -23.16317 -21.99335 -21.29722 -20.30394 -20.04539 -17.97659 -17.95908 -17.72391 -16.58009 -16.35916 -15.66207 -15.54059 -15.02542 -14.80014 -14.78980 -14.73210 -14.30737 -13.88017 -13.84185 -13.70949 -13.62785 -13.16706 -13.01342 -12.84739 -12.71717 -12.53961 -12.30321 -11.98642 -11.51690 -11.36331 -11.10003 -11.06042 -11.02049 -10.96078 -10.78093 -10.70468 -10.33933 -9.80736 -9.75251 -9.36716 -9.06342 -8.89133 -8.73797 -8.22403 -6.48921 -6.20875 -3.91310 1.15019 1.75880 2.90310 2.97643 3.10955 3.22634 3.26256 3.30628 3.51111 3.75174 3.86577 4.12673 4.21093 4.43084 4.49746 4.60012 4.66608 4.75241 4.83044 4.98552 5.02815 5.04641 5.14029 5.14369 5.15931 5.17912 5.26875 5.30954 5.36609 5.39939 5.44707 5.58632 5.65592 5.72281 5.73671 5.89858 5.91886 6.13937 6.15037 6.20729 6.51076 6.60967 6.76144 7.60193 7.72138 7.95463 8.35885 8.63678 9.24344 10.86532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001812 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.943050 B =15445.580411 C =15542.519421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.199 4.199 3 C -0.066 4.066 4 O 0.103 5.897 5 N -0.344 5.344 6 C 0.026 3.974 7 C 0.135 3.865 8 N -0.528 5.528 9 C 0.050 3.950 10 C -0.114 4.114 11 C -0.132 4.132 12 C 0.152 3.848 13 H 0.097 0.903 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.053 3.947 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.041 0.959 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 25.024 18.933 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.204 4.204 3 C -0.147 4.147 4 O 0.035 5.965 5 N -0.047 5.047 6 C -0.134 4.134 7 C 0.006 3.994 8 N -0.254 5.254 9 C -0.078 4.078 10 C -0.152 4.152 11 C -0.171 4.171 12 C 0.046 3.954 13 H 0.115 0.885 14 N -0.390 5.390 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.075 4.075 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.231 0.769 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.505 25.488 16.992 31.316 hybrid contribution -2.682 -2.013 1.962 3.885 sum -9.188 23.475 18.954 31.539 Atomic orbital electron populations 1.20269 0.87525 1.03610 1.02798 1.21326 0.98579 0.91771 1.08681 1.25763 0.83310 1.01115 1.04494 1.84861 1.29021 1.15642 1.66959 1.73890 1.22262 0.91043 1.17460 1.23233 0.88542 0.97843 1.03780 1.20253 1.01072 0.87968 0.90067 1.61687 1.44327 1.05219 1.14155 1.22368 0.91042 0.99344 0.95027 1.21542 1.02879 0.95741 0.95085 1.22005 0.98157 0.94860 1.02103 1.20781 1.00411 0.79808 0.94386 0.88472 1.45997 1.62536 1.06990 1.23439 1.20291 0.77235 0.89117 0.81337 1.90708 1.40826 1.71044 1.36179 1.23534 1.05445 0.93667 1.07744 1.85413 1.75509 1.04741 1.17632 1.22869 1.44559 0.92069 1.08893 0.90948 1.24997 0.94589 0.99548 0.94489 1.70018 1.36859 1.35257 1.08117 0.86168 0.78160 0.82766 0.78397 1.20293 1.20744 1.19712 1.22278 1.01126 0.87126 0.96950 0.90868 0.90788 0.90679 0.76892 0.92324 0.88730 0.90177 0.94552 0.90726 0.91060 0.90595 0.92135 0.77047 0.89244 0.89283 0.92185 0.94085 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 9.89 36.00 0.36 0.01 16 2 C -0.20 -1.34 5.33 -104.42 -0.56 -1.90 16 3 C -0.07 -0.38 12.26 29.74 0.36 -0.02 16 4 O 0.10 0.95 11.20 17.19 0.19 1.14 16 5 N -0.34 -3.87 12.07 33.42 0.40 -3.46 16 6 C 0.03 0.24 6.16 -82.10 -0.51 -0.26 16 7 C 0.13 1.11 5.47 -4.98 -0.03 1.08 16 8 N -0.53 -4.99 4.65 -236.12 -1.10 -6.09 16 9 C 0.05 0.41 4.10 -3.84 -0.02 0.39 16 10 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 11 C -0.13 -1.50 5.57 -26.61 -0.15 -1.65 16 12 C 0.15 1.85 2.61 -67.85 -0.18 1.67 16 13 H 0.10 1.50 7.59 -51.93 -0.39 1.10 16 14 N -0.74 -9.74 5.08 -53.73 -0.27 -10.02 16 15 C 0.53 9.94 7.81 -10.98 -0.09 9.85 16 16 O -0.51 -11.72 15.53 5.55 0.09 -11.63 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.05 0.50 4.93 -3.83 -0.02 0.48 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.33 5.56 -51.92 -0.29 0.04 16 31 H 0.21 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 33 H 0.09 0.79 7.98 -51.93 -0.41 0.38 16 34 H 0.08 0.64 5.13 -51.93 -0.27 0.38 16 35 H 0.04 0.26 7.63 -51.93 -0.40 -0.14 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -36.08 380.64 -8.73 -44.81 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.72 Total: -0.09 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.56 Total: -7.47 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.23 Total: -45.12 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.28 Total: -10.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.08 -8.73 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481531754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.912 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds