Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35456 * 128.00837 * 2 1 4 4 O 1.34033 * 106.44883 * 179.97438 * 3 2 1 5 5 N 1.20928 * 111.56662 * 359.71465 * 4 3 2 6 6 C 1.30172 * 111.60269 * 0.47912 * 5 4 3 7 7 C 1.50696 * 126.80147 * 179.79661 * 6 5 4 8 8 N 1.46899 * 109.47309 * 269.69000 * 7 6 5 9 9 C 1.46847 * 111.00030 * 293.95381 * 8 7 6 10 10 C 1.53034 * 109.52326 * 174.16117 * 9 8 7 11 11 C 1.53117 * 109.28010 * 59.17583 * 10 9 8 12 12 C 1.53119 * 109.16519 * 302.34814 * 11 10 9 13 13 H 1.09004 * 109.50124 * 297.67309 * 12 11 10 14 14 N 1.46498 * 109.50817 * 177.59204 * 12 11 10 15 15 C 1.34777 * 119.99828 * 84.72111 * 14 12 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.46855 * 111.00079 * 169.74292 * 8 7 6 28 28 H 1.09002 * 109.47352 * 270.03690 * 1 2 3 29 29 H 1.08992 * 109.47618 * 30.04104 * 1 2 3 30 30 H 1.09008 * 109.47509 * 150.04174 * 1 2 3 31 31 H 1.08000 * 126.77067 * 359.94677 * 3 2 1 32 32 H 1.08997 * 109.47396 * 149.68648 * 7 6 5 33 33 H 1.08998 * 109.47006 * 29.69058 * 7 6 5 34 34 H 1.08991 * 109.45838 * 54.14472 * 9 8 7 35 35 H 1.09002 * 109.45812 * 294.17252 * 9 8 7 36 36 H 1.08999 * 109.50313 * 299.23815 * 10 9 8 37 37 H 1.08993 * 109.53842 * 179.13986 * 10 9 8 38 38 H 1.08999 * 109.52842 * 182.43981 * 11 10 9 39 39 H 1.09004 * 109.57425 * 62.28323 * 11 10 9 40 40 H 0.97001 * 120.00384 * 265.00558 * 14 12 11 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.46027 * 65.82420 * 27 8 7 45 45 H 1.09006 * 109.46257 * 305.85734 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5748 0.0006 5 7 3.5877 -0.6345 0.0065 6 6 2.3775 -1.1139 0.0005 7 6 1.9827 -2.5683 0.0007 8 7 1.8548 -3.0411 -1.3843 9 6 0.7375 -2.3758 -2.0665 10 6 0.7244 -2.7820 -3.5419 11 6 0.5781 -4.3026 -3.6463 12 6 1.7272 -4.9715 -2.8869 13 1 2.6762 -4.6975 -3.3479 14 7 1.5628 -6.4265 -2.9334 15 6 2.0220 -7.1230 -3.9920 16 8 2.5757 -6.5459 -4.9037 17 6 1.8474 -8.6190 -4.0428 18 16 2.5636 -9.2583 -5.5772 19 6 2.2293 -10.9768 -5.3781 20 1 1.7195 -11.3289 -4.4935 21 6 2.6204 -11.8780 -6.3587 22 7 3.2414 -11.4489 -7.4371 23 14 2.2667 -13.7000 -6.1473 24 1 0.9403 -14.0180 -6.7345 25 1 3.3163 -14.4914 -6.8381 26 1 2.2621 -14.0389 -4.7015 27 6 1.7112 -4.5019 -1.4305 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8895 -0.5144 30 1 -0.3634 -0.8904 -0.5132 31 1 2.0575 2.1094 -0.0008 32 1 1.0285 -2.6857 0.5142 33 1 2.7462 -3.1520 0.5149 34 1 0.8560 -1.2952 -1.9883 35 1 -0.2016 -2.6729 -1.5997 36 1 1.6576 -2.4731 -4.0127 37 1 -0.1139 -2.3004 -4.0451 38 1 0.6118 -4.6008 -4.6942 39 1 -0.3732 -4.6088 -3.2110 40 1 1.1199 -6.8882 -2.2043 41 1 2.3521 -9.0729 -3.1899 42 1 0.7854 -8.8623 -4.0081 43 1 3.5150 -12.0787 -8.1221 44 1 0.7675 -4.7888 -0.9667 45 1 2.5369 -4.9653 -0.8904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481531754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -2.660835 kcal Electronic energy + Delta-G solvation = -26492.075413 eV Core-core repulsion = 22637.803116 eV Total energy + Delta-G solvation = -3854.272297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88695 -41.12234 -39.72023 -36.75075 -35.24351 -34.58594 -34.01472 -32.89423 -31.77182 -29.63877 -29.15052 -28.01030 -27.64686 -24.57005 -24.01981 -22.52816 -22.06371 -21.54537 -20.93725 -19.81438 -18.61057 -18.45651 -17.84733 -17.54307 -16.88341 -16.64990 -16.40994 -16.21211 -15.88705 -15.50253 -15.37204 -14.99030 -14.75209 -14.68612 -14.42228 -14.18852 -14.03264 -13.67118 -13.60967 -13.46125 -13.16886 -13.12753 -12.94547 -12.89030 -12.61279 -12.35082 -11.96333 -11.90807 -11.84040 -11.73152 -11.60449 -11.14475 -11.01539 -10.89345 -10.27471 -10.22124 -10.11876 -9.38612 -8.67245 -8.34798 -6.13097 0.64236 1.17994 1.27606 1.42353 1.46778 1.57096 1.60985 2.17237 2.27473 2.49263 2.97628 2.99249 3.21226 3.32476 3.60460 3.64615 3.80342 3.94332 4.01594 4.02460 4.10312 4.23491 4.27900 4.30580 4.36860 4.49814 4.50388 4.56962 4.58913 4.67414 4.78990 4.82642 4.85120 4.89420 4.94843 5.01123 5.03148 5.20515 5.28492 5.38636 5.41581 5.44789 5.91897 6.00499 6.19636 6.50966 7.06310 7.25586 7.40203 8.74440 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001812 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.943050 B =15445.580411 C =15542.519421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.206 4.206 3 C -0.058 4.058 4 O 0.085 5.915 5 N -0.391 5.391 6 C 0.012 3.988 7 C 0.137 3.863 8 N -0.550 5.550 9 C 0.056 3.944 10 C -0.110 4.110 11 C -0.127 4.127 12 C 0.152 3.848 13 H 0.057 0.943 14 N -0.708 5.708 15 C 0.536 3.464 16 O -0.565 6.565 17 C -0.128 4.128 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.064 3.936 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.255 0.745 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 25.301 21.722 35.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.210 4.210 3 C -0.138 4.138 4 O 0.020 5.980 5 N -0.096 5.096 6 C -0.147 4.147 7 C 0.010 3.990 8 N -0.276 5.276 9 C -0.071 4.071 10 C -0.149 4.149 11 C -0.166 4.166 12 C 0.046 3.954 13 H 0.076 0.924 14 N -0.362 5.362 15 C 0.322 3.678 16 O -0.442 6.442 17 C -0.279 4.279 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.064 4.064 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.271 0.729 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.377 25.796 19.846 33.871 hybrid contribution -1.821 -1.935 1.157 2.898 sum -11.198 23.861 21.003 33.703 Atomic orbital electron populations 1.20349 0.85403 1.04434 1.03728 1.21687 0.99902 0.90899 1.08511 1.26596 0.81918 1.02845 1.02485 1.84799 1.30768 1.15131 1.67300 1.73886 1.23903 0.92083 1.19733 1.23603 0.88721 0.98914 1.03483 1.20276 1.02032 0.87433 0.89297 1.61585 1.45492 1.05203 1.15348 1.22340 0.91657 0.99472 0.93625 1.21519 1.02373 0.94397 0.96584 1.21935 0.98602 0.96130 0.99898 1.20828 0.99061 0.78743 0.96731 0.92432 1.45686 1.60744 1.07544 1.22197 1.20076 0.77157 0.88646 0.81947 1.90701 1.43439 1.71671 1.38438 1.23364 1.06181 0.94521 1.03839 1.85630 1.77244 1.06210 1.23629 1.23207 1.44591 0.92090 1.09435 0.89802 1.26158 0.94054 1.05183 0.93915 1.70190 1.38182 1.37211 1.09243 0.84936 0.78190 0.75653 0.79082 1.19246 1.20375 1.18131 1.22136 1.02686 0.87332 0.94268 0.89809 0.89122 0.90679 0.72865 0.89818 0.89472 0.89775 0.92155 0.93285 0.89165 0.94073 0.89859 0.74583 0.87173 0.87004 0.92019 0.91111 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 9.89 71.23 0.70 0.32 16 2 C -0.21 -2.30 5.33 -19.74 -0.11 -2.40 16 3 C -0.06 -0.56 12.26 67.18 0.82 0.26 16 4 O 0.09 1.55 11.20 71.69 0.80 2.35 16 5 N -0.39 -8.85 12.07 -49.56 -0.60 -9.45 16 6 C 0.01 0.21 6.16 43.58 0.27 0.48 16 7 C 0.14 2.02 5.47 85.56 0.47 2.49 16 8 N -0.55 -9.53 4.65 -900.94 -4.19 -13.72 16 9 C 0.06 0.79 4.10 86.32 0.35 1.14 16 10 C -0.11 -2.00 6.09 30.64 0.19 -1.81 16 11 C -0.13 -2.78 5.57 30.67 0.17 -2.61 16 12 C 0.15 3.63 2.61 45.04 0.12 3.75 16 13 H 0.06 1.87 7.59 -2.38 -0.02 1.86 16 14 N -0.71 -17.86 5.08 -442.28 -2.25 -20.11 16 15 C 0.54 20.04 7.81 87.66 0.68 20.73 16 16 O -0.56 -26.97 15.53 -3.04 -0.05 -27.02 16 17 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 18 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 19 C -0.55 -31.31 9.50 67.96 0.65 -30.66 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 23 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 27 C 0.06 1.05 4.93 86.32 0.43 1.48 16 28 H 0.08 0.23 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 0.36 5.56 -2.38 -0.01 0.35 16 31 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.09 1.38 7.98 -2.39 -0.02 1.36 16 34 H 0.08 1.15 5.13 -2.39 -0.01 1.14 16 35 H 0.06 0.59 7.63 -2.39 -0.02 0.57 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.42 7.16 8.60 -92.71 -0.80 6.37 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.40 8.01 -2.38 -0.02 1.39 16 Total: -1.00 -84.07 380.64 0.74 -83.33 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.21 Total: 15.25 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.65 Total: -10.34 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -6.75 Total: -99.56 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.07 0.74 -83.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481531754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.672 kcal (2) G-P(sol) polarization free energy of solvation -84.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds