Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32762 * 123.45859 * 2 1 4 4 S 1.75509 * 110.57327 * 180.02562 * 3 2 1 5 5 C 1.70444 * 92.44579 * 0.02562 * 4 3 2 6 6 C 1.36007 * 110.81759 * 0.02562 * 5 4 3 7 7 C 1.47188 * 123.46197 * 180.02562 * 6 5 4 8 8 O 1.21641 * 119.99844 * 138.63263 * 7 6 5 9 9 N 1.34773 * 120.00319 * 318.63132 * 7 6 5 10 10 C 1.46502 * 119.99777 * 4.77338 * 9 7 6 11 11 C 1.46503 * 120.00477 * 184.77401 * 9 7 6 12 12 C 1.53000 * 109.46793 * 89.99924 * 11 9 7 13 13 N 1.46900 * 109.47006 * 180.02562 * 12 11 9 14 14 C 1.46903 * 111.00011 * 66.04201 * 13 12 11 15 15 C 1.46898 * 111.00224 * 189.99689 * 13 12 11 16 16 C 1.50708 * 109.47164 * 169.99821 * 15 13 12 17 17 O 1.21292 * 120.00076 * 0.02562 * 16 15 13 18 18 N 1.34769 * 119.99767 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99550 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00121 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99695 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00389 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00091 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46743 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47309 * 120.00040 * 23 21 19 26 26 H 1.48504 * 109.47103 * 240.00413 * 23 21 19 27 27 H 1.08998 * 109.47252 * 89.96699 * 1 2 3 28 28 H 1.09003 * 109.47569 * 209.97522 * 1 2 3 29 29 H 1.09004 * 109.46632 * 329.97357 * 1 2 3 30 30 H 1.07993 * 124.71606 * 359.76203 * 3 2 1 31 31 H 1.08003 * 124.59226 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47512 * 84.31594 * 10 9 7 33 33 H 1.09000 * 109.47499 * 204.32117 * 10 9 7 34 34 H 1.09004 * 109.46883 * 324.31577 * 10 9 7 35 35 H 1.08994 * 109.46897 * 209.99744 * 11 9 7 36 36 H 1.08997 * 109.46798 * 330.00183 * 11 9 7 37 37 H 1.09005 * 109.47031 * 299.99965 * 12 11 9 38 38 H 1.08996 * 109.47883 * 60.00147 * 12 11 9 39 39 H 1.08998 * 109.47205 * 60.00421 * 14 13 12 40 40 H 1.08998 * 109.47433 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47470 * 300.00198 * 14 13 12 42 42 H 1.08997 * 109.47454 * 289.99813 * 15 13 12 43 43 H 1.09003 * 109.46900 * 50.00201 * 15 13 12 44 44 H 0.97000 * 120.00425 * 0.02562 * 18 16 15 45 45 H 0.97000 * 120.00580 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7162 -0.0007 5 6 3.6411 -0.9600 -0.0018 6 6 2.3032 -1.2050 -0.0022 7 6 1.7261 -2.5590 -0.0025 8 8 0.7602 -2.8086 0.6934 9 7 2.2679 -3.5223 -0.7739 10 6 3.4923 -3.2519 -1.5314 11 6 1.6323 -4.8398 -0.8550 12 6 0.6196 -4.8477 -2.0018 13 7 -0.0181 -6.1686 -2.0828 14 6 -0.8367 -6.4319 -0.8917 15 6 -0.8175 -6.2930 -3.3090 16 6 -1.2521 -7.7257 -3.4821 17 8 -0.9282 -8.5607 -2.6642 18 7 -2.0006 -8.0789 -4.5457 19 6 -2.3964 -9.3821 -4.7029 20 1 -2.1087 -10.1254 -3.9742 21 6 -3.1676 -9.7464 -5.7998 22 7 -3.5173 -8.8419 -6.6867 23 14 -3.7075 -11.5218 -6.0137 24 1 -3.1863 -12.3368 -4.8870 25 1 -5.1909 -11.5897 -6.0297 26 1 -3.1740 -12.0506 -7.2947 27 1 -0.3633 0.0006 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 1.8375 2.1101 -0.0037 31 1 4.4043 -1.7241 -0.0029 32 1 4.3590 -3.4094 -0.8895 33 1 3.5466 -3.9252 -2.3868 34 1 3.4824 -2.2197 -1.8816 35 1 2.3927 -5.5994 -1.0365 36 1 1.1206 -5.0546 0.0831 37 1 -0.1408 -4.0880 -1.8203 38 1 1.1312 -4.6328 -2.9400 39 1 -1.6146 -5.6727 -0.8104 40 1 -1.2976 -7.4158 -0.9778 41 1 -0.2058 -6.4022 -0.0034 42 1 -1.6967 -5.6529 -3.2361 43 1 -0.2170 -5.9893 -4.1665 44 1 -2.2593 -7.4111 -5.2000 45 1 -4.0554 -9.0963 -7.4527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482588938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -21.811071 kcal Electronic energy + Delta-G solvation = -26636.108343 eV Core-core repulsion = 22781.005630 eV Total energy + Delta-G solvation = -3855.102714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49763 -38.62570 -37.65637 -36.61745 -35.52503 -33.82704 -31.81657 -31.21955 -29.79615 -28.00430 -27.61192 -27.16819 -25.53162 -24.46284 -23.41730 -21.43830 -20.35376 -19.13356 -18.74360 -18.00254 -17.81895 -17.03280 -16.32859 -16.15031 -15.59539 -15.20577 -14.82084 -14.55774 -14.50078 -14.12708 -13.89531 -13.83043 -13.70249 -13.41112 -13.18889 -13.13496 -12.80775 -12.76766 -12.56146 -12.23078 -12.14032 -12.06265 -11.92973 -11.49142 -11.30712 -11.28842 -11.19771 -10.91604 -10.75619 -10.32596 -10.20642 -10.06709 -9.46475 -9.25349 -8.98322 -8.68767 -8.39686 -7.95542 -7.83019 -6.39673 -3.80307 0.45530 1.17206 1.52204 1.71975 2.58689 2.95430 3.17739 3.28135 3.35537 3.93297 4.07746 4.26172 4.31074 4.37966 4.77991 4.80873 4.90040 4.98626 5.03166 5.14539 5.19705 5.23267 5.28591 5.34612 5.37626 5.43233 5.52058 5.62435 5.70899 5.77294 5.83290 5.90446 5.92327 6.00180 6.08909 6.15121 6.27994 6.32598 6.63187 7.09936 7.29348 7.40961 7.57527 7.92850 8.09098 8.64350 9.20539 9.57078 10.09043 10.78220 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.001863 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.430993 B =15023.902779 C =15176.391559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.241 4.241 4 S 0.174 5.826 5 C -0.215 4.215 6 C -0.145 4.145 7 C 0.578 3.422 8 O -0.526 6.526 9 N -0.608 5.608 10 C 0.072 3.928 11 C 0.118 3.882 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.445 22.568 10.099 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.066 4.066 3 C -0.375 4.375 4 S 0.442 5.558 5 C -0.353 4.353 6 C -0.164 4.164 7 C 0.364 3.636 8 O -0.403 6.403 9 N -0.341 5.341 10 C -0.071 4.071 11 C -0.004 4.004 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.122 0.878 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.186 0.814 31 H 0.191 0.809 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.758 22.355 10.831 29.964 hybrid contribution -2.212 -0.640 -0.765 2.426 sum 14.546 21.714 10.066 28.008 Atomic orbital electron populations 1.20658 0.88827 1.04213 1.02820 1.19828 0.97408 0.89850 0.99474 1.25294 0.96340 1.02606 1.13291 1.83039 1.05726 0.96969 1.70097 1.25827 0.99610 1.02670 1.07186 1.20126 0.92390 0.94278 1.09586 1.17701 0.82890 0.83513 0.79495 1.90794 1.26982 1.81592 1.40964 1.47723 1.26920 1.13186 1.46295 1.22063 0.85834 1.02804 0.96390 1.21529 0.96538 0.82217 1.00146 1.22430 0.96956 0.90484 0.98877 1.61525 1.33333 1.26803 1.02364 1.22582 0.95635 1.02837 0.91653 1.21857 0.96608 0.96885 0.93084 1.19724 0.83663 0.89282 0.84256 1.90483 1.59370 1.51993 1.44212 1.41875 1.45870 1.10533 1.21950 1.19750 1.29138 0.85595 1.08149 0.87845 1.25265 0.97278 0.99882 0.95647 1.69622 1.38090 1.33875 1.12824 0.85802 0.78172 0.82060 0.78317 1.19216 1.20808 1.20788 0.91021 0.89304 0.91241 0.81411 0.80867 0.92475 0.90196 0.90745 0.89207 0.89234 0.94808 0.90949 0.96580 0.88574 0.91999 0.93468 0.89499 0.77515 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.95 36.01 0.36 -0.63 16 2 C -0.05 -0.52 6.00 -104.06 -0.62 -1.14 16 3 C -0.24 -1.76 10.91 28.86 0.31 -1.44 16 4 S 0.17 1.05 23.02 -107.50 -2.48 -1.42 16 5 C -0.22 -1.60 8.59 29.93 0.26 -1.34 16 6 C -0.15 -1.48 5.21 -104.63 -0.55 -2.02 16 7 C 0.58 7.23 7.24 -12.63 -0.09 7.14 16 8 O -0.53 -8.39 14.76 5.24 0.08 -8.31 16 9 N -0.61 -6.51 2.87 -182.94 -0.53 -7.04 16 10 C 0.07 0.50 9.01 59.85 0.54 1.04 16 11 C 0.12 1.45 5.34 -4.04 -0.02 1.43 16 12 C 0.04 0.58 5.28 -3.82 -0.02 0.56 16 13 N -0.52 -8.91 4.50 -244.36 -1.10 -10.01 16 14 C 0.02 0.36 8.96 60.07 0.54 0.90 16 15 C 0.05 0.87 5.45 -4.97 -0.03 0.84 16 16 C 0.45 10.64 7.47 -10.98 -0.08 10.56 16 17 O -0.58 -15.62 13.91 5.55 0.08 -15.54 16 18 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.04 6.22 -51.93 -0.32 0.72 16 29 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.17 0.94 6.08 -52.48 -0.32 0.63 16 32 H 0.06 0.30 7.11 -51.93 -0.37 -0.07 16 33 H 0.08 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.07 0.47 6.05 -51.93 -0.31 0.15 16 35 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 36 H 0.09 1.26 5.77 -51.93 -0.30 0.96 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 41 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 42 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 43 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -33.56 380.44 -8.50 -42.06 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.29 Total: 9.00 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 0.36 Total: 7.89 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.96 Total: -55.58 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.15 Total: -23.85 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.48 Total: -1.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.56 -8.50 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482588938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.252 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds