Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32762 * 123.45859 * 2 1 4 4 S 1.75509 * 110.57327 * 180.02562 * 3 2 1 5 5 C 1.70444 * 92.44579 * 0.02562 * 4 3 2 6 6 C 1.36007 * 110.81759 * 0.02562 * 5 4 3 7 7 C 1.47188 * 123.46197 * 180.02562 * 6 5 4 8 8 O 1.21641 * 119.99844 * 138.63263 * 7 6 5 9 9 N 1.34773 * 120.00319 * 318.63132 * 7 6 5 10 10 C 1.46502 * 119.99777 * 4.77338 * 9 7 6 11 11 C 1.46503 * 120.00477 * 184.77401 * 9 7 6 12 12 C 1.53000 * 109.46793 * 89.99924 * 11 9 7 13 13 N 1.46900 * 109.47006 * 180.02562 * 12 11 9 14 14 C 1.46903 * 111.00011 * 66.04201 * 13 12 11 15 15 C 1.46898 * 111.00224 * 189.99689 * 13 12 11 16 16 C 1.50708 * 109.47164 * 169.99821 * 15 13 12 17 17 O 1.21292 * 120.00076 * 0.02562 * 16 15 13 18 18 N 1.34769 * 119.99767 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99550 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00121 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99695 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00389 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00091 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46743 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47309 * 120.00040 * 23 21 19 26 26 H 1.48504 * 109.47103 * 240.00413 * 23 21 19 27 27 H 1.08998 * 109.47252 * 89.96699 * 1 2 3 28 28 H 1.09003 * 109.47569 * 209.97522 * 1 2 3 29 29 H 1.09004 * 109.46632 * 329.97357 * 1 2 3 30 30 H 1.07993 * 124.71606 * 359.76203 * 3 2 1 31 31 H 1.08003 * 124.59226 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47512 * 84.31594 * 10 9 7 33 33 H 1.09000 * 109.47499 * 204.32117 * 10 9 7 34 34 H 1.09004 * 109.46883 * 324.31577 * 10 9 7 35 35 H 1.08994 * 109.46897 * 209.99744 * 11 9 7 36 36 H 1.08997 * 109.46798 * 330.00183 * 11 9 7 37 37 H 1.09005 * 109.47031 * 299.99965 * 12 11 9 38 38 H 1.08996 * 109.47883 * 60.00147 * 12 11 9 39 39 H 1.08998 * 109.47205 * 60.00421 * 14 13 12 40 40 H 1.08998 * 109.47433 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47470 * 300.00198 * 14 13 12 42 42 H 1.08997 * 109.47454 * 289.99813 * 15 13 12 43 43 H 1.09003 * 109.46900 * 50.00201 * 15 13 12 44 44 H 0.97000 * 120.00425 * 0.02562 * 18 16 15 45 45 H 0.97000 * 120.00580 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7162 -0.0007 5 6 3.6411 -0.9600 -0.0018 6 6 2.3032 -1.2050 -0.0022 7 6 1.7261 -2.5590 -0.0025 8 8 0.7602 -2.8086 0.6934 9 7 2.2679 -3.5223 -0.7739 10 6 3.4923 -3.2519 -1.5314 11 6 1.6323 -4.8398 -0.8550 12 6 0.6196 -4.8477 -2.0018 13 7 -0.0181 -6.1686 -2.0828 14 6 -0.8367 -6.4319 -0.8917 15 6 -0.8175 -6.2930 -3.3090 16 6 -1.2521 -7.7257 -3.4821 17 8 -0.9282 -8.5607 -2.6642 18 7 -2.0006 -8.0789 -4.5457 19 6 -2.3964 -9.3821 -4.7029 20 1 -2.1087 -10.1254 -3.9742 21 6 -3.1676 -9.7464 -5.7998 22 7 -3.5173 -8.8419 -6.6867 23 14 -3.7075 -11.5218 -6.0137 24 1 -3.1863 -12.3368 -4.8870 25 1 -5.1909 -11.5897 -6.0297 26 1 -3.1740 -12.0506 -7.2947 27 1 -0.3633 0.0006 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 1.8375 2.1101 -0.0037 31 1 4.4043 -1.7241 -0.0029 32 1 4.3590 -3.4094 -0.8895 33 1 3.5466 -3.9252 -2.3868 34 1 3.4824 -2.2197 -1.8816 35 1 2.3927 -5.5994 -1.0365 36 1 1.1206 -5.0546 0.0831 37 1 -0.1408 -4.0880 -1.8203 38 1 1.1312 -4.6328 -2.9400 39 1 -1.6146 -5.6727 -0.8104 40 1 -1.2976 -7.4158 -0.9778 41 1 -0.2058 -6.4022 -0.0034 42 1 -1.6967 -5.6529 -3.2361 43 1 -0.2170 -5.9893 -4.1665 44 1 -2.2593 -7.4111 -5.2000 45 1 -4.0554 -9.0963 -7.4527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482588938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -45.473614 kcal Electronic energy + Delta-G solvation = -26637.134428 eV Core-core repulsion = 22781.005630 eV Total energy + Delta-G solvation = -3856.128798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34488 -40.37229 -38.54836 -37.85566 -36.58541 -35.83154 -33.28841 -32.56550 -30.83978 -29.22599 -28.57864 -27.92203 -27.04811 -25.88287 -24.36351 -22.60109 -21.23214 -20.97639 -19.86266 -19.46359 -18.60150 -17.92395 -17.80403 -17.20418 -16.75899 -16.56275 -16.36778 -16.02194 -15.71306 -15.44536 -15.10568 -14.92308 -14.74442 -14.46753 -14.17773 -14.06846 -13.87829 -13.74718 -13.46647 -13.43253 -13.25164 -13.14556 -13.02352 -12.82330 -12.67898 -12.61846 -12.55466 -12.39461 -12.11197 -11.89322 -11.87586 -11.46658 -10.96564 -10.34403 -10.00110 -9.84110 -9.78030 -9.31485 -9.22057 -8.46271 -5.94815 -0.13650 0.65419 0.93371 1.03726 1.36645 1.41809 1.56106 1.74091 2.04751 2.14624 2.29580 2.82215 3.20183 3.39704 3.63564 3.73761 3.91678 4.08131 4.19490 4.20788 4.26701 4.33724 4.38087 4.44194 4.49367 4.55957 4.57619 4.61972 4.65894 4.71039 4.74352 4.79509 4.86289 4.90422 4.96396 5.15272 5.27231 5.41158 5.42553 5.46856 5.82181 6.01527 6.11464 6.29220 6.60785 7.05926 7.13347 7.56357 8.12144 8.71428 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.001863 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.430993 B =15023.902779 C =15176.391559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.083 4.083 3 C -0.241 4.241 4 S 0.237 5.763 5 C -0.209 4.209 6 C -0.177 4.177 7 C 0.572 3.428 8 O -0.575 6.575 9 N -0.605 5.605 10 C 0.066 3.934 11 C 0.124 3.876 12 C 0.051 3.949 13 N -0.527 5.527 14 C 0.029 3.971 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.092 0.908 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.561 24.334 9.273 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.376 4.376 4 S 0.505 5.495 5 C -0.347 4.347 6 C -0.195 4.195 7 C 0.360 3.640 8 O -0.456 6.456 9 N -0.337 5.337 10 C -0.076 4.076 11 C 0.001 3.999 12 C -0.078 4.078 13 N -0.251 5.251 14 C -0.119 4.119 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.206 0.794 31 H 0.211 0.789 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.908 24.158 9.975 32.259 hybrid contribution -2.754 -1.085 -0.475 2.998 sum 16.154 23.073 9.500 29.725 Atomic orbital electron populations 1.20575 0.89603 1.03433 1.02576 1.19902 0.97388 0.90576 1.01560 1.25611 0.97462 1.02940 1.11571 1.82886 1.03766 0.94901 1.67922 1.26129 0.98934 1.04573 1.05100 1.20011 0.93589 0.93099 1.12846 1.18168 0.82329 0.84621 0.78891 1.90761 1.29239 1.82476 1.43084 1.47790 1.27679 1.12122 1.46102 1.22336 0.84752 1.03702 0.96807 1.21343 0.96504 0.83637 0.98411 1.22429 0.96764 0.88095 1.00482 1.61496 1.32953 1.29119 1.01567 1.22415 0.96010 1.00842 0.92632 1.21749 0.97861 0.92943 0.94757 1.20673 0.82156 0.91293 0.82860 1.90463 1.60320 1.53867 1.45173 1.41933 1.46565 1.09968 1.22724 1.19696 1.31064 0.86479 1.08724 0.90252 1.26053 0.96633 1.03912 0.94849 1.69681 1.38054 1.35465 1.13040 0.84861 0.78071 0.77073 0.78262 1.19788 1.19721 1.19530 0.91071 0.92420 0.89595 0.79374 0.78927 0.90246 0.89195 0.89773 0.87941 0.91448 0.95899 0.88928 0.96275 0.92008 0.90626 0.92096 0.86770 0.77054 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.95 71.24 0.71 -1.27 16 2 C -0.08 -1.53 6.00 -19.46 -0.12 -1.65 16 3 C -0.24 -2.96 10.91 66.64 0.73 -2.23 16 4 S 0.24 2.06 23.02 -56.49 -1.30 0.76 16 5 C -0.21 -2.56 8.59 67.30 0.58 -1.99 16 6 C -0.18 -3.44 5.21 -19.87 -0.10 -3.55 16 7 C 0.57 14.40 7.24 86.59 0.63 15.03 16 8 O -0.58 -19.34 14.76 -4.16 -0.06 -19.40 16 9 N -0.61 -12.35 2.87 -850.94 -2.44 -14.80 16 10 C 0.07 0.74 9.01 127.77 1.15 1.89 16 11 C 0.12 2.99 5.34 86.38 0.46 3.45 16 12 C 0.05 1.36 5.28 86.30 0.46 1.82 16 13 N -0.53 -18.03 4.50 -927.03 -4.17 -22.20 16 14 C 0.03 1.05 8.96 127.69 1.14 2.19 16 15 C 0.06 2.11 5.45 85.56 0.47 2.58 16 16 C 0.44 21.56 7.47 87.66 0.66 22.21 16 17 O -0.61 -34.27 13.91 -3.07 -0.04 -34.31 16 18 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 19 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.47 6.22 -2.39 -0.01 1.46 16 29 H 0.09 1.26 8.13 -2.38 -0.02 1.24 16 30 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.19 1.43 6.08 -2.91 -0.02 1.42 16 32 H 0.08 0.56 7.11 -2.39 -0.02 0.55 16 33 H 0.09 0.86 8.03 -2.39 -0.02 0.84 16 34 H 0.08 0.81 6.05 -2.38 -0.01 0.80 16 35 H 0.10 2.20 8.07 -2.39 -0.02 2.18 16 36 H 0.07 1.94 5.77 -2.39 -0.01 1.93 16 37 H 0.02 0.67 8.12 -2.38 -0.02 0.65 16 38 H 0.09 2.10 7.93 -2.39 -0.02 2.09 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.06 2.66 5.82 -2.39 -0.01 2.65 16 41 H 0.08 2.47 6.47 -2.39 -0.02 2.45 16 42 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 43 H 0.11 3.54 7.93 -2.39 -0.02 3.52 16 44 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -75.48 380.44 1.00 -74.48 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.29 Total: 31.53 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 8.04 Total: 20.00 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -7.96 Total: -118.50 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.10 Total: -53.72 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.30 Total: 0.76 kcal Total: -75.48 1.00 -74.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482588938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.008 kcal (2) G-P(sol) polarization free energy of solvation -75.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds