Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30942 * 122.90329 * 2 1 4 4 C 1.29426 * 117.36203 * 180.30564 * 3 2 1 5 5 C 1.50702 * 124.80320 * 179.69392 * 4 3 2 6 6 C 1.53004 * 109.47305 * 90.03850 * 5 4 3 7 7 C 1.53004 * 117.50047 * 243.62496 * 6 5 4 8 8 C 1.52995 * 117.50040 * 174.99886 * 6 5 4 9 9 S 1.70949 * 110.39363 * 359.72740 * 4 3 2 10 10 C 1.35660 * 122.90559 * 179.80390 * 2 1 3 11 11 C 1.46682 * 126.13245 * 0.02562 * 10 2 1 12 12 O 1.21693 * 119.99805 * 359.71537 * 11 10 2 13 13 N 1.34777 * 120.00182 * 179.71670 * 11 10 2 14 14 C 1.46498 * 119.99828 * 180.27909 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 O 1.42902 * 109.47328 * 64.99617 * 15 14 13 18 18 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 19 19 N 1.46491 * 109.47329 * 179.97438 * 18 15 14 20 20 C 1.36943 * 120.00083 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99413 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00067 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00346 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99532 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47406 * 60.00258 * 24 22 20 26 26 H 1.48507 * 109.46670 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47317 * 299.99862 * 24 22 20 28 28 H 1.08997 * 109.47359 * 270.19510 * 1 2 3 29 29 H 1.08994 * 109.47027 * 30.20116 * 1 2 3 30 30 H 1.08999 * 109.47058 * 150.19731 * 1 2 3 31 31 H 1.09000 * 109.47628 * 210.03634 * 5 4 3 32 32 H 1.08998 * 109.47398 * 330.03700 * 5 4 3 33 33 H 1.09003 * 115.54758 * 29.33047 * 6 5 4 34 34 H 1.09001 * 117.49515 * 359.97438 * 7 6 5 35 35 H 1.08992 * 117.50001 * 145.01861 * 7 6 5 36 36 H 1.09002 * 117.50324 * 214.97926 * 8 6 5 37 37 H 1.09002 * 117.50276 * 0.02562 * 8 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 40 40 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 41 41 H 0.96696 * 113.99765 * 60.00422 * 17 15 14 42 42 H 1.09000 * 109.46800 * 300.00452 * 18 15 14 43 43 H 1.09002 * 109.46892 * 59.99206 * 18 15 14 44 44 H 0.97004 * 120.00228 * 359.97438 * 19 18 15 45 45 H 0.96990 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0061 5 6 4.4821 2.1230 -0.0138 6 6 4.8202 2.5146 1.4261 7 6 4.4165 3.9154 1.8907 8 6 5.8892 3.5894 1.6335 9 16 3.9447 -0.6780 -0.0053 10 6 2.2440 -1.1390 0.0039 11 6 1.7192 -2.5087 0.0081 12 8 0.5174 -2.6998 0.0134 13 7 2.5681 -3.5556 0.0059 14 6 2.0439 -4.9236 0.0039 15 6 3.2084 -5.9159 -0.0052 16 1 3.8631 -5.7001 -0.8497 17 8 3.9464 -5.7956 1.2125 18 6 2.6639 -7.3401 -0.1331 19 7 3.7790 -8.2901 -0.1424 20 6 3.5334 -9.6331 -0.2497 21 1 2.5176 -9.9917 -0.3270 22 6 4.5900 -10.5333 -0.2591 23 7 5.8279 -10.0961 -0.1654 24 14 4.2548 -12.3652 -0.4048 25 1 3.5398 -12.6380 -1.6774 26 1 5.5417 -13.1063 -0.3920 27 1 3.4168 -12.8075 0.7385 28 1 -0.3634 0.0035 1.0276 29 1 -0.3633 0.8881 -0.5169 30 1 -0.3633 -0.8917 -0.5108 31 1 5.3928 1.8228 -0.5320 32 1 4.0362 2.9751 -0.5269 33 1 4.7696 1.7075 2.1570 34 1 3.9104 4.5581 1.1703 35 1 4.1001 4.0301 2.9273 36 1 6.5415 3.4898 2.5010 37 1 6.3513 4.0179 0.7441 38 1 3.5260 -3.4032 0.0013 39 1 1.4385 -5.0820 0.8964 40 1 1.4297 -5.0760 -0.8835 41 1 3.4255 -5.9743 2.0074 42 1 2.0092 -7.5558 0.7113 43 1 2.1010 -7.4318 -1.0619 44 1 4.6913 -7.9679 -0.0734 45 1 6.5661 -10.7252 -0.1716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482782662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -15.142945 kcal Electronic energy + Delta-G solvation = -25788.863804 eV Core-core repulsion = 21934.050242 eV Total energy + Delta-G solvation = -3854.813562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67039 -39.48383 -37.98932 -37.58663 -34.52890 -34.03235 -32.98611 -31.36854 -29.81053 -29.53306 -28.11669 -25.37056 -23.73875 -22.90531 -22.81284 -21.64091 -21.40884 -21.11663 -19.71887 -18.31646 -17.42344 -17.16022 -16.29745 -16.15921 -16.11550 -15.63125 -15.29828 -14.84709 -14.63845 -14.49837 -14.22986 -14.05276 -13.73683 -13.63231 -13.15345 -13.04203 -12.80846 -12.72183 -12.60823 -12.35368 -11.99368 -11.96575 -11.89799 -11.61178 -10.98103 -10.89864 -10.82215 -10.67913 -10.50901 -10.31180 -10.22205 -10.00504 -9.83256 -9.82326 -9.54641 -9.28557 -8.99882 -8.92020 -6.96487 -5.78078 -3.08047 -0.07846 0.83611 1.25293 2.14093 2.91585 2.95597 3.27797 3.42908 3.47166 3.48343 3.54249 4.22790 4.34222 4.42877 4.50460 4.56390 4.59905 4.67994 4.76665 4.87265 4.96691 5.06075 5.13358 5.18560 5.20908 5.44308 5.46521 5.52255 5.53118 5.56413 5.63021 5.65863 5.70449 5.72180 5.89330 6.05955 6.16194 6.27793 6.47153 6.63107 7.20850 7.35099 7.65983 7.88617 7.96207 8.40043 9.51676 10.07874 10.43761 11.44124 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.001934 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.460285 B =14471.887914 C =15642.167629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.150 3.850 3 N -0.474 5.474 4 C 0.069 3.931 5 C -0.016 4.016 6 C -0.153 4.153 7 C -0.172 4.172 8 C -0.174 4.174 9 S 0.169 5.831 10 C -0.301 4.301 11 C 0.596 3.404 12 O -0.526 6.526 13 N -0.715 5.715 14 C 0.091 3.909 15 C 0.088 3.912 16 H 0.105 0.895 17 O -0.552 6.552 18 C 0.127 3.873 19 N -0.725 5.725 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.402 0.598 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.374 0.626 42 H 0.024 0.976 43 H 0.029 0.971 44 H 0.389 0.611 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 29.636 1.801 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 N -0.188 5.188 4 C -0.207 4.207 5 C -0.057 4.057 6 C -0.173 4.173 7 C -0.209 4.209 8 C -0.211 4.211 9 S 0.427 5.573 10 C -0.425 4.425 11 C 0.381 3.619 12 O -0.404 6.404 13 N -0.366 5.366 14 C -0.033 4.033 15 C 0.028 3.972 16 H 0.122 0.878 17 O -0.357 6.357 18 C -0.001 4.001 19 N -0.370 5.370 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.221 0.779 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.224 0.776 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.741 29.424 1.363 29.583 hybrid contribution -0.712 -1.038 0.336 1.303 sum -3.453 28.386 1.699 28.645 Atomic orbital electron populations 1.20668 0.85907 1.04513 1.03743 1.20684 0.98677 0.84875 0.94580 1.66085 1.04293 1.31265 1.17171 1.27263 0.94261 0.98431 1.00732 1.19933 0.95421 0.93904 0.96434 1.22179 1.05146 0.93608 0.96346 1.23057 0.97627 0.97598 1.02659 1.23023 0.92064 1.02354 1.03699 1.84031 1.05187 1.02106 1.66005 1.25481 0.96209 0.99110 1.21675 1.16663 0.86138 0.82401 0.76695 1.90791 1.14198 1.84982 1.50456 1.45833 1.09898 1.06022 1.74867 1.22189 0.97526 0.80075 1.03553 1.22404 0.92225 0.94092 0.88455 0.87764 1.86578 1.40936 1.92697 1.15456 1.21182 0.92284 0.87756 0.98924 1.42214 1.03843 1.02228 1.88737 1.19174 0.92727 0.82796 1.42943 0.91245 1.24764 0.95227 0.98099 1.02728 1.69663 0.97584 1.33581 1.56956 0.86249 0.76704 0.85186 0.77902 1.21233 1.21639 1.21235 0.90084 0.90772 0.88098 0.88702 0.88242 0.87506 0.88402 0.88686 0.88407 0.88411 0.76272 0.90621 0.90010 0.77858 0.95871 0.95322 0.77634 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.69 36.01 0.35 -0.59 16 2 C 0.15 1.77 6.79 -83.89 -0.57 1.20 16 3 N -0.47 -5.28 10.50 -7.70 -0.08 -5.36 16 4 C 0.07 0.62 6.59 -13.29 -0.09 0.53 16 5 C -0.02 -0.10 6.07 -27.88 -0.17 -0.27 16 6 C -0.15 -0.93 5.72 -90.62 -0.52 -1.45 16 7 C -0.17 -0.96 10.18 -26.73 -0.27 -1.23 16 8 C -0.17 -0.83 10.25 -26.73 -0.27 -1.10 16 9 S 0.17 1.52 22.31 -107.50 -2.40 -0.87 16 10 C -0.30 -3.56 6.48 -37.10 -0.24 -3.80 16 11 C 0.60 7.96 7.78 -12.85 -0.10 7.86 16 12 O -0.53 -8.22 14.27 5.20 0.07 -8.15 16 13 N -0.71 -8.74 5.50 -61.62 -0.34 -9.08 16 14 C 0.09 1.17 5.31 -4.04 -0.02 1.15 16 15 C 0.09 1.33 3.09 -26.73 -0.08 1.24 16 16 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 17 O -0.55 -8.62 13.03 -35.23 -0.46 -9.08 16 18 C 0.13 2.42 5.92 -4.05 -0.02 2.40 16 19 N -0.73 -18.15 5.49 -59.91 -0.33 -18.48 16 20 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.18 6.01 -51.93 -0.31 0.87 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.57 7.88 -51.93 -0.41 0.16 16 33 H 0.11 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.10 0.51 8.03 -51.93 -0.42 0.09 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 4.49 7.66 -40.82 -0.31 4.18 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.37 4.88 9.04 45.56 0.41 5.30 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.39 10.44 7.54 -40.82 -0.31 10.13 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -33.55 394.34 -10.11 -43.65 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.96 Total: 13.05 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.26 Total: -1.50 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.02 Total: -60.38 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.38 Total: -17.22 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.40 Total: -0.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.55 -10.11 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482782662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds