Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34333 * 126.44701 * 2 1 4 4 N 1.34474 * 107.66851 * 179.97438 * 3 2 1 5 5 C 1.30248 * 108.70197 * 359.97438 * 4 3 2 6 6 C 1.50709 * 125.61991 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47156 * 165.02036 * 6 5 4 8 8 C 1.52996 * 109.46846 * 285.02456 * 6 5 4 9 9 N 1.46901 * 109.47052 * 45.02288 * 6 5 4 10 10 C 1.47476 * 111.00332 * 164.51567 * 9 6 5 11 11 C 1.53504 * 87.93656 * 221.29769 * 10 9 6 12 12 N 1.46503 * 114.17315 * 272.37979 * 11 10 9 13 13 C 1.46505 * 119.99729 * 33.83270 * 12 11 10 14 14 C 1.34777 * 120.00401 * 213.84503 * 12 11 10 15 15 O 1.21282 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.50690 * 120.00269 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47250 * 179.97438 * 16 14 12 18 18 C 1.76199 * 100.00232 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00157 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00116 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47169 * 60.00299 * 22 20 18 24 24 H 1.48506 * 109.47041 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47309 * 299.99724 * 22 20 18 26 26 C 1.47487 * 110.99983 * 68.54347 * 9 6 5 27 27 O 1.33960 * 108.76469 * 0.22687 * 5 4 3 28 28 H 1.08996 * 109.47102 * 90.02684 * 1 2 3 29 29 H 1.09002 * 109.47657 * 210.02912 * 1 2 3 30 30 H 1.09002 * 109.46960 * 330.02799 * 1 2 3 31 31 H 1.08001 * 126.15941 * 359.94550 * 3 2 1 32 32 H 1.09007 * 109.47300 * 55.60330 * 8 6 5 33 33 H 1.08993 * 109.47128 * 295.59845 * 8 6 5 34 34 H 1.09005 * 109.46803 * 175.60328 * 8 6 5 35 35 H 1.08996 * 113.47585 * 336.06845 * 10 9 6 36 36 H 1.09000 * 113.47305 * 106.52760 * 10 9 6 37 37 H 1.08998 * 114.34475 * 139.68139 * 11 10 9 38 38 H 1.09001 * 109.46381 * 90.00962 * 13 12 11 39 39 H 1.09002 * 109.47118 * 210.00455 * 13 12 11 40 40 H 1.08996 * 109.47453 * 330.00759 * 13 12 11 41 41 H 1.08998 * 109.47497 * 299.99591 * 16 14 12 42 42 H 1.08996 * 109.47350 * 59.99552 * 16 14 12 43 43 H 0.97005 * 119.99829 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.47890 * 253.47176 * 26 9 6 45 45 H 1.08996 * 113.47176 * 23.88029 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5764 -0.6548 0.0015 6 6 4.8004 -1.5342 0.0018 7 1 4.5163 -2.5522 0.2682 8 6 5.4323 -1.5290 -1.3915 9 7 5.7695 -1.0242 0.9810 10 6 6.7999 -2.0356 1.2809 11 6 6.6942 -1.6252 2.7563 12 7 7.5677 -0.5111 3.1332 13 6 7.8534 0.5542 2.1689 14 6 8.1087 -0.4664 4.3668 15 8 7.8720 -1.3483 5.1650 16 6 9.0077 0.6793 4.7542 17 16 9.5702 0.4547 6.4598 18 6 10.5732 1.8917 6.6430 19 1 10.6797 2.5843 5.8212 20 6 11.2274 2.1331 7.8432 21 7 11.0989 1.2883 8.8443 22 14 12.2902 3.6570 8.0375 23 1 11.4586 4.8699 7.8320 24 1 12.8734 3.6829 9.4030 25 1 13.3830 3.6298 7.0325 26 6 5.2730 -1.2027 2.3582 27 8 2.3075 -1.0840 -0.0035 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 1.9821 2.1112 -0.0008 32 1 5.6451 -0.5024 -1.6902 33 1 4.7425 -1.9795 -2.1050 34 1 6.3598 -2.1013 -1.3719 35 1 6.4735 -3.0579 1.0901 36 1 7.7698 -1.8123 0.8365 37 1 6.7320 -2.4583 3.4582 38 1 7.1084 1.3437 2.2686 39 1 8.8448 0.9637 2.3630 40 1 7.8195 0.1481 1.1580 41 1 9.8697 0.7063 4.0876 42 1 8.4570 1.6164 4.6740 43 1 11.5557 1.4572 9.6832 44 1 4.9489 -0.2735 2.8269 45 1 4.5383 -2.0020 2.4547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483851838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = 13.745816 kcal Electronic energy + Delta-G solvation = -26803.190854 eV Core-core repulsion = 22949.630003 eV Total energy + Delta-G solvation = -3853.560851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.36600 -41.99087 -40.05991 -36.42977 -35.69339 -34.58182 -34.45440 -32.68440 -30.82841 -28.41986 -28.14397 -27.67635 -27.05320 -26.53463 -24.47368 -22.87981 -22.07328 -21.52959 -19.98785 -19.41123 -18.49056 -18.02217 -17.84646 -17.38628 -16.87703 -16.84186 -16.66628 -16.22685 -15.89779 -15.46814 -15.17542 -14.60583 -14.56791 -14.50624 -14.35521 -13.91853 -13.89898 -13.54920 -13.45200 -13.33249 -13.26431 -13.15424 -13.04696 -12.91013 -12.86219 -12.63163 -12.48287 -12.35215 -12.10997 -11.87449 -11.71264 -11.45205 -11.12418 -10.93238 -10.27585 -9.99406 -9.67751 -9.63674 -8.66827 -8.33959 -6.12260 0.40353 1.24865 1.44380 1.45033 1.51555 1.54732 1.55693 1.69458 2.06546 2.28089 2.82153 2.99841 3.01283 3.26546 3.43847 3.61920 3.76463 3.78935 3.89541 3.99685 4.08629 4.21042 4.24539 4.29686 4.39293 4.40799 4.48876 4.53483 4.59411 4.64324 4.66257 4.77641 4.79380 4.83246 4.85040 4.97706 5.07168 5.09226 5.15781 5.24097 5.36813 5.42064 5.59302 5.81616 6.20160 6.29091 6.77597 7.06972 7.12261 8.75027 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002138 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.277393 B =13095.638976 C =13538.683463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.049 4.049 3 C -0.070 4.070 4 N -0.482 5.482 5 C 0.178 3.822 6 C 0.146 3.854 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.453 5.453 10 C 0.008 3.992 11 C 0.108 3.892 12 N -0.585 5.585 13 C 0.086 3.914 14 C 0.535 3.465 15 O -0.563 6.563 16 C -0.122 4.122 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.007 4.007 27 O -0.216 6.216 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.199 0.801 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.947 -5.193 -26.079 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C -0.208 4.208 4 N -0.210 5.210 5 C -0.029 4.029 6 C 0.036 3.964 7 H 0.112 0.888 8 C -0.189 4.189 9 N -0.178 5.178 10 C -0.121 4.121 11 C 0.003 3.997 12 N -0.317 5.317 13 C -0.056 4.056 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.273 4.273 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.137 4.137 27 O -0.103 6.103 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.216 0.784 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.568 -5.538 -25.055 31.673 hybrid contribution -0.242 0.872 -0.027 0.905 sum -18.810 -4.666 -25.082 31.697 Atomic orbital electron populations 1.20485 0.81062 1.05586 1.05123 1.24242 0.96536 0.83923 1.05478 1.23582 0.87674 1.01696 1.07850 1.70412 1.23674 1.09900 1.17047 1.26302 0.84292 0.90481 1.01848 1.20714 0.84506 0.93632 0.97501 0.88849 1.21747 1.01799 1.03468 0.91904 1.69196 1.07817 1.38895 1.01846 1.24336 0.98508 0.96760 0.92482 1.22069 0.89868 0.89927 0.97825 1.47377 1.47343 1.24717 1.12300 1.21927 1.00859 0.89289 0.93545 1.20115 0.79808 0.86148 0.81649 1.90666 1.61890 1.40369 1.51213 1.23358 1.01880 1.00071 1.02038 1.85516 1.61731 1.34670 1.10276 1.23159 1.33910 1.09599 1.02774 0.90016 1.26133 0.97733 1.01034 0.94255 1.70177 1.42626 1.37762 1.04132 0.85006 0.78071 0.77183 0.77753 1.18784 1.20306 1.18540 1.24234 0.97212 1.01583 0.90699 1.84370 1.18069 1.37537 1.70348 0.88155 0.89809 0.87148 0.78421 0.92306 0.90903 0.88883 0.86735 0.87308 0.87869 0.93009 0.90905 0.87788 0.87225 0.88037 0.91976 0.91868 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.43 71.23 0.74 0.27 16 2 C -0.05 -0.81 7.39 24.79 0.18 -0.63 16 3 C -0.07 -1.36 11.80 83.40 0.98 -0.37 16 4 N -0.48 -11.61 11.28 -303.83 -3.43 -15.04 16 5 C 0.18 3.68 6.56 88.35 0.58 4.26 16 6 C 0.15 2.19 2.21 44.17 0.10 2.29 16 7 H 0.09 1.04 7.56 -2.39 -0.02 1.02 16 8 C -0.13 -1.51 9.34 71.98 0.67 -0.84 16 9 N -0.45 -7.90 4.68 -906.91 -4.25 -12.15 16 10 C 0.01 0.11 6.03 83.57 0.50 0.61 16 11 C 0.11 2.51 4.67 45.44 0.21 2.72 16 12 N -0.59 -16.69 3.11 -821.60 -2.56 -19.24 16 13 C 0.09 1.95 9.33 127.77 1.19 3.14 16 14 C 0.53 20.91 7.69 87.65 0.67 21.59 16 15 O -0.56 -26.66 15.37 -3.04 -0.05 -26.70 16 16 C -0.12 -5.12 4.71 71.23 0.34 -4.78 16 17 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 18 C -0.55 -31.77 9.50 67.95 0.65 -31.13 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 22 Si 1.00 44.16 29.55 68.60 2.03 46.18 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 C -0.01 -0.15 6.77 83.58 0.57 0.42 16 27 O -0.22 -4.33 10.78 -3.71 -0.04 -4.37 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.71 7.62 -2.38 -0.02 0.70 16 35 H 0.11 0.99 7.68 -2.39 -0.02 0.97 16 36 H 0.11 1.40 7.25 -2.39 -0.02 1.39 16 37 H 0.10 2.71 7.28 -2.39 -0.02 2.70 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.60 6.44 -2.39 -0.02 1.59 16 40 H 0.10 1.93 5.68 -2.39 -0.01 1.91 16 41 H 0.11 4.13 7.40 -2.40 -0.02 4.11 16 42 H 0.10 3.98 8.11 -2.40 -0.02 3.96 16 43 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 Total: -1.00 -82.15 385.80 -0.32 -82.47 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.99 Total: 15.95 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 7.86 Total: -1.22 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -9.95 Total: -102.68 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.09 Total: -31.07 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -82.15 -0.32 -82.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483851838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.216 kcal (2) G-P(sol) polarization free energy of solvation -82.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds