Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29510 * 121.53097 * 2 1 4 4 S 1.69482 * 107.84364 * 179.91044 * 3 2 1 5 5 C 1.72018 * 96.02717 * 0.30540 * 4 3 2 6 6 C 1.50697 * 127.31851 * 179.82321 * 5 4 3 7 7 C 1.37898 * 105.36218 * 359.83467 * 5 4 3 8 8 C 1.47345 * 123.08373 * 180.02562 * 7 5 4 9 9 O 1.21621 * 119.99416 * 269.98990 * 8 7 5 10 10 N 1.34768 * 120.00432 * 89.99374 * 8 7 5 11 11 C 1.46929 * 120.62913 * 359.71944 * 10 8 7 12 12 C 1.52758 * 109.00868 * 233.58264 * 11 10 8 13 13 C 1.53042 * 109.38404 * 305.58998 * 12 11 10 14 14 C 1.53041 * 109.53884 * 61.23888 * 13 12 11 15 15 C 1.52996 * 109.52165 * 178.66700 * 14 13 12 16 16 O 1.42909 * 109.46993 * 184.85047 * 15 14 13 17 17 N 1.46499 * 109.49848 * 58.58583 * 14 13 12 18 18 C 1.36939 * 120.00021 * 180.16267 * 17 14 13 19 19 H 1.07991 * 120.00069 * 359.97438 * 18 17 14 20 20 C 1.38808 * 119.99895 * 180.02562 * 18 17 14 21 21 N 1.31616 * 120.00000 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99830 * 22 20 18 24 24 H 1.48495 * 109.47430 * 210.00592 * 22 20 18 25 25 H 1.48507 * 109.46742 * 330.00071 * 22 20 18 26 26 C 1.46922 * 120.63318 * 179.97438 * 10 8 7 27 27 H 1.09002 * 109.47152 * 269.71232 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71333 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71314 * 1 2 3 30 30 H 1.08994 * 109.47849 * 270.00843 * 6 5 4 31 31 H 1.09007 * 109.46853 * 30.00736 * 6 5 4 32 32 H 1.08999 * 109.47279 * 150.00297 * 6 5 4 33 33 H 1.08993 * 109.58892 * 353.41762 * 11 10 8 34 34 H 1.09000 * 109.58756 * 113.84394 * 11 10 8 35 35 H 1.08996 * 109.56871 * 185.55035 * 12 11 10 36 36 H 1.09004 * 109.38819 * 65.51755 * 12 11 10 37 37 H 1.08997 * 109.45919 * 301.21601 * 13 12 11 38 38 H 1.09003 * 109.46087 * 181.25708 * 13 12 11 39 39 H 1.08995 * 109.47842 * 304.85291 * 15 14 13 40 40 H 1.09005 * 109.47075 * 64.85715 * 15 14 13 41 41 H 0.96691 * 114.00158 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00044 * 0.16127 * 17 14 13 43 43 H 0.97002 * 120.00290 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.58879 * 246.15810 * 26 10 8 45 45 H 1.08995 * 109.58633 * 6.43616 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0025 5 6 3.6017 -1.0020 -0.0055 6 6 4.6677 -2.0671 -0.0111 7 6 2.2352 -1.1868 -0.0060 8 6 1.6036 -2.5180 -0.0116 9 8 1.3426 -3.0627 -1.0672 10 7 1.3151 -3.1319 1.1529 11 6 1.6299 -2.4892 2.4361 12 6 2.4624 -3.4502 3.2829 13 6 1.7232 -4.7840 3.4122 14 6 1.5334 -5.4007 2.0245 15 6 0.8240 -6.7497 2.1571 16 8 0.7481 -7.3761 0.8749 17 7 2.8409 -5.5958 1.3932 18 6 2.9211 -6.1349 0.1369 19 1 2.0205 -6.4166 -0.3883 20 6 4.1600 -6.3203 -0.4610 21 7 4.2371 -6.8380 -1.6686 22 14 5.7179 -5.8337 0.4476 23 1 6.2071 -6.9874 1.2444 24 1 6.7583 -5.4326 -0.5331 25 1 5.4267 -4.6940 1.3541 26 6 0.6849 -4.4591 1.1634 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 4.9244 -2.3190 -1.0400 31 1 5.5540 -1.6968 0.5043 32 1 4.2959 -2.9560 0.4986 33 1 2.1976 -1.5760 2.2578 34 1 0.7054 -2.2505 2.9617 35 1 2.6179 -3.0229 4.2735 36 1 3.4267 -3.6138 2.8019 37 1 0.7490 -4.6162 3.8713 38 1 2.3057 -5.4631 4.0348 39 1 1.3827 -7.3885 2.8410 40 1 -0.1826 -6.5942 2.5456 41 1 0.3097 -8.2379 0.8835 42 1 3.6499 -5.3431 1.8650 43 1 5.1028 -6.9679 -2.0863 44 1 -0.3182 -4.3840 1.5834 45 1 0.6268 -4.8441 0.1454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484856732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -17.612098 kcal Electronic energy + Delta-G solvation = -29981.815425 eV Core-core repulsion = 26126.894793 eV Total energy + Delta-G solvation = -3854.920632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43217 -38.85923 -37.34621 -35.75297 -33.89821 -33.17560 -32.25762 -31.20158 -29.78514 -29.26027 -28.11452 -25.52924 -25.32650 -23.24348 -22.50490 -21.75478 -20.79727 -18.89189 -18.13848 -18.03667 -17.62175 -16.54872 -16.30563 -15.83185 -15.11592 -14.76038 -14.43656 -14.36532 -14.16238 -14.04138 -13.58850 -13.40469 -13.25526 -13.19437 -12.90445 -12.66796 -12.48595 -12.45622 -12.27830 -12.15057 -12.07939 -11.83143 -11.32705 -11.10872 -11.04736 -10.87751 -10.74293 -10.64556 -10.54491 -10.18788 -9.98178 -9.52711 -9.40464 -9.18795 -8.97519 -8.86507 -8.57613 -8.15642 -7.13330 -5.53897 -2.89059 0.62270 1.39403 1.77016 2.21403 3.04999 3.30832 3.39891 3.46403 3.47519 4.41687 4.64293 4.72446 4.80901 4.98439 4.99577 5.03602 5.18615 5.23063 5.30515 5.34176 5.42815 5.45741 5.56926 5.64180 5.67262 5.70160 5.77892 5.82850 5.87446 5.90860 5.98916 6.00026 6.03669 6.10828 6.14138 6.28823 6.48625 6.50232 6.60291 6.81847 7.00225 7.82496 8.26077 8.40144 8.64495 8.67115 9.44010 10.09752 10.25049 11.64920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.005763 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.382412 B = 4857.300504 C = 5863.885802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.152 3.848 3 N -0.472 5.472 4 S 0.257 5.743 5 C -0.120 4.120 6 C -0.095 4.095 7 C -0.208 4.208 8 C 0.592 3.408 9 O -0.506 6.506 10 N -0.587 5.587 11 C 0.113 3.887 12 C -0.133 4.133 13 C -0.119 4.119 14 C 0.194 3.806 15 C 0.076 3.924 16 O -0.529 6.529 17 N -0.729 5.729 18 C -0.202 4.202 19 H 0.117 0.883 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.862 3.138 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.111 3.889 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.353 0.647 42 H 0.356 0.644 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 11.315 12.167 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 N -0.293 5.293 4 S 0.413 5.587 5 C -0.251 4.251 6 C -0.153 4.153 7 C -0.228 4.228 8 C 0.375 3.625 9 O -0.380 6.380 10 N -0.320 5.320 11 C -0.011 4.011 12 C -0.171 4.171 13 C -0.157 4.157 14 C 0.101 3.899 15 C -0.005 4.005 16 O -0.332 6.332 17 N -0.371 5.371 18 C -0.331 4.331 19 H 0.134 0.866 20 C -0.195 4.195 21 N -0.585 5.585 22 Si 0.694 3.306 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.207 1.207 26 C -0.013 4.013 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.198 0.802 42 H 0.190 0.810 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.273 13.569 11.169 18.348 hybrid contribution 0.421 -1.866 0.897 2.113 sum -4.852 11.703 12.066 17.495 Atomic orbital electron populations 1.20623 0.86292 1.04365 1.03644 1.21257 0.98799 0.87013 0.95512 1.76342 1.00148 1.25951 1.26829 1.83867 1.10561 0.96140 1.68162 1.26100 0.97457 1.01894 0.99606 1.20585 0.94344 0.95627 1.04755 1.20289 0.92558 0.96255 1.13681 1.17171 0.78152 0.83177 0.84033 1.90875 1.51870 1.64892 1.30369 1.47711 1.60801 1.18870 1.04600 1.21496 0.99043 0.95757 0.84772 1.21811 1.00123 0.95693 0.99518 1.21676 1.00603 0.96553 0.96833 1.19920 0.87813 0.91378 0.90745 1.22627 0.96552 0.95150 0.86171 1.87037 1.81813 1.35937 1.28399 1.42802 1.00556 1.75604 1.18131 1.19387 0.95040 1.29149 0.89558 0.86565 1.24611 0.96104 1.02470 0.96314 1.69669 1.22928 1.51640 1.14235 0.86947 0.86379 0.78102 0.79149 1.21881 1.22083 1.20701 1.22169 0.93191 0.81134 1.04789 0.89734 0.89763 0.89946 0.88828 0.90510 0.88423 0.90857 0.91727 0.91165 0.90942 0.91389 0.91464 0.94477 0.95635 0.80230 0.80993 0.93648 0.93181 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.96 36.01 0.36 -0.67 16 2 C 0.15 2.24 6.75 -83.20 -0.56 1.68 16 3 N -0.47 -6.94 11.97 32.50 0.39 -6.55 16 4 S 0.26 3.46 23.69 -107.50 -2.55 0.91 16 5 C -0.12 -1.90 6.52 -34.43 -0.22 -2.12 16 6 C -0.09 -1.55 10.19 36.00 0.37 -1.19 16 7 C -0.21 -3.45 3.62 -105.95 -0.38 -3.84 16 8 C 0.59 11.31 5.65 -12.56 -0.07 11.24 16 9 O -0.51 -12.17 16.52 5.26 0.09 -12.08 16 10 N -0.59 -9.72 2.89 -174.31 -0.50 -10.22 16 11 C 0.11 1.44 6.31 -3.93 -0.02 1.42 16 12 C -0.13 -1.67 5.90 -26.83 -0.16 -1.83 16 13 C -0.12 -1.54 4.77 -26.69 -0.13 -1.66 16 14 C 0.19 3.32 0.68 -131.68 -0.09 3.23 16 15 C 0.08 1.22 6.09 37.16 0.23 1.45 16 16 O -0.53 -10.08 10.05 -35.23 -0.35 -10.44 16 17 N -0.73 -15.80 4.55 -47.11 -0.21 -16.02 16 18 C -0.20 -5.45 8.55 -15.06 -0.13 -5.58 16 19 H 0.12 3.53 5.50 -52.49 -0.29 3.24 16 20 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 21 N -0.93 -29.84 13.97 55.49 0.78 -29.07 16 22 Si 0.86 21.50 27.40 -169.99 -4.66 16.84 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.28 -6.23 5.98 56.52 0.34 -5.89 16 26 C 0.11 1.96 4.91 -3.69 -0.02 1.94 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.08 7.39 -51.93 -0.38 0.69 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.88 6.96 -51.93 -0.36 1.52 16 33 H 0.07 0.93 6.22 -51.93 -0.32 0.61 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.06 9.12 45.56 0.42 5.48 16 42 H 0.36 7.71 4.29 -40.82 -0.18 7.53 16 43 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 2.47 5.83 -51.93 -0.30 2.17 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -35.49 366.57 -8.05 -43.54 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.62 Total: 13.63 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.93 Total: 3.93 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.45 Total: -61.85 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.27 Total: -22.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.66 Total: 16.84 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.55 Total: 0.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.49 -8.05 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484856732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.932 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds