Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29510 * 121.53097 * 2 1 4 4 S 1.69482 * 107.84364 * 179.91044 * 3 2 1 5 5 C 1.72018 * 96.02717 * 0.30540 * 4 3 2 6 6 C 1.50697 * 127.31851 * 179.82321 * 5 4 3 7 7 C 1.37898 * 105.36218 * 359.83467 * 5 4 3 8 8 C 1.47345 * 123.08373 * 180.02562 * 7 5 4 9 9 O 1.21621 * 119.99416 * 269.98990 * 8 7 5 10 10 N 1.34768 * 120.00432 * 89.99374 * 8 7 5 11 11 C 1.46929 * 120.62913 * 359.71944 * 10 8 7 12 12 C 1.52758 * 109.00868 * 233.58264 * 11 10 8 13 13 C 1.53042 * 109.38404 * 305.58998 * 12 11 10 14 14 C 1.53041 * 109.53884 * 61.23888 * 13 12 11 15 15 C 1.52996 * 109.52165 * 178.66700 * 14 13 12 16 16 O 1.42909 * 109.46993 * 184.85047 * 15 14 13 17 17 N 1.46499 * 109.49848 * 58.58583 * 14 13 12 18 18 C 1.36939 * 120.00021 * 180.16267 * 17 14 13 19 19 H 1.07991 * 120.00069 * 359.97438 * 18 17 14 20 20 C 1.38808 * 119.99895 * 180.02562 * 18 17 14 21 21 N 1.31616 * 120.00000 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99830 * 22 20 18 24 24 H 1.48495 * 109.47430 * 210.00592 * 22 20 18 25 25 H 1.48507 * 109.46742 * 330.00071 * 22 20 18 26 26 C 1.46922 * 120.63318 * 179.97438 * 10 8 7 27 27 H 1.09002 * 109.47152 * 269.71232 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71333 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71314 * 1 2 3 30 30 H 1.08994 * 109.47849 * 270.00843 * 6 5 4 31 31 H 1.09007 * 109.46853 * 30.00736 * 6 5 4 32 32 H 1.08999 * 109.47279 * 150.00297 * 6 5 4 33 33 H 1.08993 * 109.58892 * 353.41762 * 11 10 8 34 34 H 1.09000 * 109.58756 * 113.84394 * 11 10 8 35 35 H 1.08996 * 109.56871 * 185.55035 * 12 11 10 36 36 H 1.09004 * 109.38819 * 65.51755 * 12 11 10 37 37 H 1.08997 * 109.45919 * 301.21601 * 13 12 11 38 38 H 1.09003 * 109.46087 * 181.25708 * 13 12 11 39 39 H 1.08995 * 109.47842 * 304.85291 * 15 14 13 40 40 H 1.09005 * 109.47075 * 64.85715 * 15 14 13 41 41 H 0.96691 * 114.00158 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00044 * 0.16127 * 17 14 13 43 43 H 0.97002 * 120.00290 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.58879 * 246.15810 * 26 10 8 45 45 H 1.08995 * 109.58633 * 6.43616 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0025 5 6 3.6017 -1.0020 -0.0055 6 6 4.6677 -2.0671 -0.0111 7 6 2.2352 -1.1868 -0.0060 8 6 1.6036 -2.5180 -0.0116 9 8 1.3426 -3.0627 -1.0672 10 7 1.3151 -3.1319 1.1529 11 6 1.6299 -2.4892 2.4361 12 6 2.4624 -3.4502 3.2829 13 6 1.7232 -4.7840 3.4122 14 6 1.5334 -5.4007 2.0245 15 6 0.8240 -6.7497 2.1571 16 8 0.7481 -7.3761 0.8749 17 7 2.8409 -5.5958 1.3932 18 6 2.9211 -6.1349 0.1369 19 1 2.0205 -6.4166 -0.3883 20 6 4.1600 -6.3203 -0.4610 21 7 4.2371 -6.8380 -1.6686 22 14 5.7179 -5.8337 0.4476 23 1 6.2071 -6.9874 1.2444 24 1 6.7583 -5.4326 -0.5331 25 1 5.4267 -4.6940 1.3541 26 6 0.6849 -4.4591 1.1634 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 4.9244 -2.3190 -1.0400 31 1 5.5540 -1.6968 0.5043 32 1 4.2959 -2.9560 0.4986 33 1 2.1976 -1.5760 2.2578 34 1 0.7054 -2.2505 2.9617 35 1 2.6179 -3.0229 4.2735 36 1 3.4267 -3.6138 2.8019 37 1 0.7490 -4.6162 3.8713 38 1 2.3057 -5.4631 4.0348 39 1 1.3827 -7.3885 2.8410 40 1 -0.1826 -6.5942 2.5456 41 1 0.3097 -8.2379 0.8835 42 1 3.6499 -5.3431 1.8650 43 1 5.1028 -6.9679 -2.0863 44 1 -0.3182 -4.3840 1.5834 45 1 0.6268 -4.8441 0.1454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484856732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -46.082410 kcal Electronic energy + Delta-G solvation = -29983.049991 eV Core-core repulsion = 26126.894793 eV Total energy + Delta-G solvation = -3856.155198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74510 -40.11639 -38.78183 -37.13754 -35.57587 -34.46019 -33.85791 -32.68559 -31.14645 -30.66636 -29.36214 -26.86210 -26.51828 -25.22160 -23.74075 -22.91531 -22.01844 -20.33900 -19.65019 -19.37324 -19.09789 -17.88268 -17.80411 -17.19562 -16.59236 -16.12895 -15.93928 -15.71469 -15.58709 -15.29051 -14.89499 -14.68132 -14.60064 -14.46905 -14.32737 -14.21989 -13.82399 -13.69808 -13.52217 -13.37751 -13.24723 -13.17311 -12.96847 -12.72819 -12.50586 -12.27846 -11.99508 -11.91660 -11.82693 -11.76928 -11.36170 -11.32273 -10.99546 -10.78081 -10.53354 -10.42196 -9.68066 -9.61666 -9.03805 -7.76558 -5.07706 -0.57805 0.22759 0.64969 1.03835 1.28719 1.37386 1.44388 1.62620 2.17141 2.59994 3.26202 3.37206 3.57930 3.58496 3.74579 3.80546 3.92932 4.08858 4.12052 4.15640 4.26013 4.29985 4.35157 4.46209 4.54620 4.59225 4.61582 4.65196 4.67370 4.76051 4.81686 4.86797 4.92383 5.01027 5.03229 5.06207 5.17058 5.41346 5.43301 5.49192 5.68924 6.18431 6.47707 6.51022 7.15726 7.24775 7.37256 8.03480 8.20455 9.46698 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.005763 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.382412 B = 4857.300504 C = 5863.885802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.152 3.848 3 N -0.483 5.483 4 S 0.321 5.679 5 C -0.138 4.138 6 C -0.092 4.092 7 C -0.222 4.222 8 C 0.589 3.411 9 O -0.576 6.576 10 N -0.581 5.581 11 C 0.107 3.893 12 C -0.131 4.131 13 C -0.111 4.111 14 C 0.180 3.820 15 C 0.072 3.928 16 O -0.571 6.571 17 N -0.729 5.729 18 C -0.154 4.154 19 H 0.076 0.924 20 C -0.087 4.087 21 N -0.999 5.999 22 Si 0.928 3.072 23 H -0.294 1.294 24 H -0.309 1.309 25 H -0.239 1.239 26 C 0.115 3.885 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.042 0.958 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.371 0.629 42 H 0.359 0.641 43 H 0.243 0.757 44 H 0.087 0.913 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 14.051 16.830 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 N -0.305 5.305 4 S 0.477 5.523 5 C -0.268 4.268 6 C -0.151 4.151 7 C -0.242 4.242 8 C 0.374 3.626 9 O -0.456 6.456 10 N -0.312 5.312 11 C -0.015 4.015 12 C -0.169 4.169 13 C -0.149 4.149 14 C 0.089 3.911 15 C -0.008 4.008 16 O -0.376 6.376 17 N -0.371 5.371 18 C -0.286 4.286 19 H 0.094 0.906 20 C -0.274 4.274 21 N -0.654 5.654 22 Si 0.759 3.241 23 H -0.221 1.221 24 H -0.237 1.237 25 H -0.164 1.164 26 C -0.009 4.009 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.218 0.782 42 H 0.193 0.807 43 H 0.052 0.948 44 H 0.104 0.896 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.918 16.345 15.973 23.608 hybrid contribution 0.435 -2.682 -0.508 2.764 sum -5.483 13.663 15.465 21.352 Atomic orbital electron populations 1.20705 0.84510 1.04146 1.05346 1.21420 0.99967 0.86085 0.95047 1.76279 1.01100 1.25950 1.27125 1.83626 1.09342 0.92983 1.66376 1.26159 0.97091 1.03653 0.99933 1.20501 0.95905 0.95063 1.03614 1.20233 0.93072 0.95649 1.15284 1.17587 0.77374 0.83908 0.83755 1.90843 1.54951 1.66843 1.32916 1.47846 1.59451 1.18270 1.05621 1.21864 1.01138 0.95649 0.82860 1.21840 0.98330 0.95547 1.01204 1.21700 1.03117 0.96499 0.93579 1.20427 0.85362 0.92262 0.93003 1.22724 0.98831 0.94189 0.85024 1.86974 1.82523 1.37419 1.30708 1.42776 1.02988 1.75005 1.16371 1.19185 0.93191 1.25469 0.90766 0.90600 1.25338 0.99977 1.04687 0.97433 1.69909 1.22941 1.55557 1.16982 0.85812 0.81399 0.78884 0.78028 1.22128 1.23719 1.16366 1.22010 0.95387 0.81764 1.01740 0.86953 0.91532 0.88545 0.90805 0.87101 0.91438 0.90588 0.87813 0.86966 0.93911 0.87440 0.90447 0.93869 0.91490 0.78195 0.80679 0.94811 0.89552 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.96 71.24 0.71 -1.14 16 2 C 0.15 4.21 6.75 43.14 0.29 4.50 16 3 N -0.48 -12.97 11.97 -51.10 -0.61 -13.59 16 4 S 0.32 7.81 23.69 -56.49 -1.34 6.47 16 5 C -0.14 -4.22 6.52 25.60 0.17 -4.05 16 6 C -0.09 -3.01 10.19 71.23 0.73 -2.28 16 7 C -0.22 -7.24 3.62 -20.72 -0.07 -7.31 16 8 C 0.59 22.98 5.65 86.64 0.49 23.47 16 9 O -0.58 -29.71 16.52 -4.10 -0.07 -29.78 16 10 N -0.58 -18.55 2.89 -823.65 -2.38 -20.93 16 11 C 0.11 2.28 6.31 86.22 0.54 2.83 16 12 C -0.13 -2.65 5.90 30.53 0.18 -2.47 16 13 C -0.11 -2.32 4.77 30.62 0.15 -2.18 16 14 C 0.18 5.81 0.68 3.69 0.00 5.81 16 15 C 0.07 2.17 6.09 71.98 0.44 2.61 16 16 O -0.57 -22.26 10.05 -148.98 -1.50 -23.75 16 17 N -0.73 -31.46 4.55 -302.95 -1.38 -32.84 16 18 C -0.15 -8.73 8.55 84.03 0.72 -8.01 16 19 H 0.08 4.94 5.50 -2.92 -0.02 4.93 16 20 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 21 N -1.00 -68.27 13.97 21.65 0.30 -67.97 16 22 Si 0.93 46.11 27.40 68.60 1.88 47.99 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 25 H -0.24 -10.04 5.98 99.48 0.59 -9.44 16 26 C 0.12 3.98 4.91 86.38 0.42 4.40 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.69 7.39 -2.39 -0.02 1.67 16 29 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.07 2.60 6.96 -2.39 -0.02 2.58 16 33 H 0.08 1.64 6.22 -2.39 -0.01 1.63 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.14 6.75 -2.39 -0.02 1.12 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.37 10.90 9.12 -74.06 -0.68 10.23 16 42 H 0.36 15.06 4.29 -92.71 -0.40 14.67 16 43 H 0.24 16.12 8.31 -92.71 -0.77 15.35 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.39 5.83 -2.39 -0.01 2.38 16 Total: -1.00 -87.36 366.57 -0.01 -87.37 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.14 Total: 35.67 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.23 Total: 11.35 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -4.07 Total: -135.33 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -1.57 Total: -53.53 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.34 Total: 6.47 kcal Total: -87.36 -0.01 -87.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484856732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.291 kcal (2) G-P(sol) polarization free energy of solvation -87.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds