Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37476 * 123.35259 * 2 1 4 4 C 1.33807 * 115.10284 * 179.76927 * 3 2 1 5 5 S 1.70625 * 110.95457 * 0.48000 * 4 3 2 6 6 C 1.36648 * 123.35377 * 180.28826 * 2 1 3 7 7 C 1.46581 * 125.45771 * 0.02562 * 6 2 1 8 8 O 1.21707 * 120.00167 * 351.62095 * 7 6 2 9 9 N 1.34774 * 120.00408 * 171.61457 * 7 6 2 10 10 C 1.46505 * 119.99861 * 1.52727 * 9 7 6 11 11 C 1.46502 * 120.00522 * 181.52105 * 9 7 6 12 12 C 1.52993 * 109.46910 * 87.46387 * 11 9 7 13 13 H 1.08996 * 109.47815 * 296.65890 * 12 11 9 14 14 C 1.53002 * 109.47194 * 176.65194 * 12 11 9 15 15 N 1.46903 * 109.47128 * 56.65992 * 12 11 9 16 16 C 1.46896 * 111.00366 * 207.08211 * 15 12 11 17 17 C 1.50696 * 109.47776 * 179.97438 * 16 15 12 18 18 O 1.21297 * 119.99366 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00382 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00206 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00056 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99962 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99911 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47004 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47152 * 119.99651 * 24 22 20 27 27 H 1.48498 * 109.46724 * 240.00089 * 24 22 20 28 28 H 1.08996 * 109.46925 * 269.70785 * 1 2 3 29 29 H 1.08998 * 109.47006 * 29.70957 * 1 2 3 30 30 H 1.08998 * 109.46958 * 149.70974 * 1 2 3 31 31 H 1.07999 * 122.44478 * 359.97438 * 3 2 1 32 32 H 1.07994 * 124.52664 * 180.21267 * 4 3 2 33 33 H 1.09001 * 109.47148 * 84.27668 * 10 9 7 34 34 H 1.08997 * 109.47283 * 204.28221 * 10 9 7 35 35 H 1.09005 * 109.46654 * 324.27641 * 10 9 7 36 36 H 1.08995 * 109.47509 * 207.46856 * 11 9 7 37 37 H 1.09003 * 109.46680 * 327.47031 * 11 9 7 38 38 H 1.09005 * 109.46590 * 60.00245 * 14 12 11 39 39 H 1.08994 * 109.47516 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47308 * 300.01006 * 14 12 11 41 41 H 1.00905 * 110.99751 * 331.03147 * 15 12 11 42 42 H 1.08998 * 109.47227 * 299.99825 * 16 15 12 43 43 H 1.09006 * 109.47003 * 59.99637 * 16 15 12 44 44 H 0.96998 * 120.00170 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99454 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5870 0.9563 0.0049 5 16 3.9623 -0.7081 -0.0035 6 6 2.2583 -1.1414 -0.0057 7 6 1.7285 -2.5081 -0.0132 8 8 0.5362 -2.6994 0.1390 9 7 2.5616 -3.5529 -0.1886 10 6 4.0010 -3.3249 -0.3384 11 6 2.0279 -4.9167 -0.2293 12 6 1.6174 -5.2610 -1.6624 13 1 0.8111 -4.5992 -1.9785 14 6 1.1381 -6.7128 -1.7207 15 7 2.7703 -5.0898 -2.5565 16 6 2.3343 -4.7753 -3.9235 17 6 3.5414 -4.6065 -4.8097 18 8 4.6556 -4.7352 -4.3477 19 7 3.3832 -4.3117 -6.1152 20 6 4.4814 -4.1588 -6.9215 21 1 5.4735 -4.2741 -6.5103 22 6 4.3182 -3.8553 -8.2676 23 7 3.1112 -3.7155 -8.7680 24 14 5.8147 -3.6462 -9.3660 25 1 7.0487 -3.8527 -8.5659 26 1 5.7647 -4.6427 -10.4657 27 1 5.8204 -2.2762 -9.9391 28 1 -0.3633 -0.0052 1.0276 29 1 -0.3633 0.8926 -0.5093 30 1 -0.3633 -0.8874 -0.5183 31 1 1.8201 2.1334 -0.0004 32 1 4.3205 1.7490 0.0089 33 1 4.4605 -3.2438 0.6467 34 1 4.4467 -4.1595 -0.8796 35 1 4.1667 -2.4017 -0.8938 36 1 2.7926 -5.6164 0.1077 37 1 1.1583 -4.9861 0.4243 38 1 0.2826 -6.8399 -1.0572 39 1 0.8460 -6.9583 -2.7417 40 1 1.9443 -7.3746 -1.4046 41 1 3.3982 -4.3822 -2.2055 42 1 1.7151 -5.5879 -4.3034 43 1 1.7567 -3.8509 -3.9171 44 1 2.4923 -4.2085 -6.4846 45 1 2.9974 -3.5033 -9.7076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485842345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -49.681388 kcal Electronic energy + Delta-G solvation = -27533.847221 eV Core-core repulsion = 23677.535960 eV Total energy + Delta-G solvation = -3856.311261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35017 -40.19729 -39.11547 -37.93039 -36.15902 -35.77831 -33.32092 -32.57188 -31.76625 -29.66299 -28.56652 -28.09908 -26.77952 -25.66243 -24.30107 -22.44683 -21.30725 -21.08526 -19.93292 -19.39168 -19.12937 -17.99461 -17.37895 -17.08073 -16.99720 -16.49276 -16.47845 -16.17800 -15.94306 -15.56224 -15.34411 -14.67809 -14.59536 -14.34671 -14.25919 -14.15049 -13.90704 -13.82614 -13.50859 -13.36093 -13.23425 -13.03986 -12.96410 -12.90416 -12.78638 -12.57878 -12.49349 -12.39668 -12.10314 -12.02615 -11.52058 -11.42857 -11.02981 -10.36858 -10.03387 -10.02931 -9.73143 -9.44271 -9.24872 -8.47338 -5.96506 -0.48801 0.53114 0.99177 1.36504 1.37002 1.42028 1.56510 1.79649 2.01335 2.07826 2.28236 2.85765 3.19544 3.42541 3.48451 3.84117 3.92753 3.96813 4.16004 4.19367 4.24344 4.31756 4.35466 4.37630 4.44877 4.50988 4.57846 4.62226 4.69289 4.74967 4.76261 4.93756 5.00384 5.03334 5.05648 5.24700 5.37130 5.40593 5.45520 5.47745 5.83927 6.03845 6.13835 6.36980 6.57339 6.94296 7.10601 7.53189 8.06986 8.70441 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.003252 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.922053 B = 8608.985948 C = 9959.319924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.029 4.029 3 C -0.164 4.164 4 C -0.251 4.251 5 S 0.256 5.744 6 C -0.320 4.320 7 C 0.584 3.416 8 O -0.557 6.557 9 N -0.613 5.613 10 C 0.051 3.949 11 C 0.119 3.881 12 C 0.066 3.934 13 H 0.031 0.969 14 C -0.131 4.131 15 N -0.669 5.669 16 C 0.063 3.937 17 C 0.441 3.559 18 O -0.615 6.615 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.083 0.917 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.160 0.840 32 H 0.191 0.809 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.344 0.656 42 H 0.101 0.899 43 H 0.047 0.953 44 H 0.394 0.606 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 6.045 20.157 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.388 4.388 5 S 0.526 5.474 6 C -0.439 4.439 7 C 0.374 3.626 8 O -0.438 6.438 9 N -0.345 5.345 10 C -0.093 4.093 11 C -0.004 4.004 12 C -0.044 4.044 13 H 0.049 0.951 14 C -0.190 4.190 15 N -0.305 5.305 16 C -0.069 4.069 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.210 5.210 20 C -0.461 4.461 21 H 0.101 0.899 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.208 0.792 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.166 0.834 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.228 0.772 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.059 4.441 20.244 20.753 hybrid contribution -1.482 2.090 -1.082 2.781 sum -2.541 6.532 19.162 20.404 Atomic orbital electron populations 1.20635 0.88733 1.03208 1.03089 1.19793 0.98233 0.91153 0.95348 1.20071 0.92925 0.99773 1.06596 1.26313 1.01197 1.05738 1.05537 1.83483 1.01589 0.95751 1.66555 1.24455 0.99388 0.96812 1.23271 1.17273 0.85565 0.83723 0.76004 1.90748 1.15820 1.85499 1.51769 1.47799 1.08079 1.06841 1.71783 1.22384 0.79681 1.02959 1.04278 1.21845 1.01631 0.81137 0.95754 1.22039 0.91425 0.98506 0.92469 0.95087 1.21697 1.01483 0.93670 1.02114 1.60429 1.16888 1.52948 1.00276 1.21558 0.94346 1.00843 0.90179 1.20648 0.91097 0.82361 0.83111 1.90465 1.27631 1.57086 1.74959 1.41946 1.09334 1.62022 1.07652 1.19742 0.88378 1.46909 0.91120 0.89909 1.26083 1.00859 0.96253 0.98138 1.69694 1.22637 1.48419 1.15557 0.84850 0.77502 0.78234 0.77634 1.19431 1.19681 1.19673 0.90139 0.89875 0.91869 0.82249 0.79216 0.88299 0.87982 0.91089 0.87011 0.88605 0.90529 0.93171 0.91241 0.83376 0.88054 0.93550 0.77227 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.45 71.24 0.67 -1.52 16 2 C -0.03 -0.69 5.90 -20.42 -0.12 -0.81 16 3 C -0.16 -3.13 9.97 21.08 0.21 -2.92 16 4 C -0.25 -4.31 10.92 66.81 0.73 -3.58 16 5 S 0.26 4.83 17.92 -56.49 -1.01 3.82 16 6 C -0.32 -8.10 6.25 24.08 0.15 -7.95 16 7 C 0.58 16.50 7.60 86.42 0.66 17.16 16 8 O -0.56 -18.34 13.99 -4.37 -0.06 -18.40 16 9 N -0.61 -14.68 2.58 -851.61 -2.19 -16.87 16 10 C 0.05 1.04 7.74 127.77 0.99 2.03 16 11 C 0.12 2.61 5.06 86.38 0.44 3.04 16 12 C 0.07 1.73 2.93 44.91 0.13 1.86 16 13 H 0.03 0.94 7.77 -2.39 -0.02 0.92 16 14 C -0.13 -2.89 9.44 71.98 0.68 -2.21 16 15 N -0.67 -21.76 5.94 -495.59 -2.94 -24.70 16 16 C 0.06 2.36 5.96 85.56 0.51 2.87 16 17 C 0.44 21.29 7.82 87.66 0.69 21.97 16 18 O -0.62 -33.36 15.78 -3.08 -0.05 -33.41 16 19 N -0.57 -29.88 5.29 -306.99 -1.62 -31.51 16 20 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.26 13.05 21.66 0.28 -49.97 16 24 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.74 6.23 -2.39 -0.01 1.73 16 31 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.10 1.43 7.88 -2.39 -0.02 1.41 16 34 H 0.10 2.20 6.47 -2.39 -0.02 2.19 16 35 H 0.07 1.56 4.37 -21.59 -0.09 1.46 16 36 H 0.11 1.98 8.05 -2.39 -0.02 1.96 16 37 H 0.10 2.08 7.48 -2.39 -0.02 2.06 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.05 1.20 7.59 -2.39 -0.02 1.18 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.34 11.33 4.37 -89.69 -0.39 10.94 16 42 H 0.10 3.47 7.58 -2.39 -0.02 3.45 16 43 H 0.05 1.68 8.05 -2.38 -0.02 1.66 16 44 H 0.39 19.87 7.90 -92.71 -0.73 19.14 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -71.13 377.56 1.27 -69.86 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.17 Total: 44.79 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 7.01 Total: 11.63 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -6.48 Total: -123.05 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.11 Total: -51.80 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.01 Total: 3.82 kcal Total: -71.13 1.27 -69.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485842345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.181 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds