Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34469 * 126.16705 * 2 1 4 4 C 1.30260 * 108.70399 * 180.02562 * 3 2 1 5 5 O 1.33963 * 108.75555 * 359.72836 * 4 3 2 6 6 C 1.34335 * 126.16277 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.44595 * 359.97438 * 6 2 1 8 8 N 1.46901 * 109.47232 * 90.00024 * 7 6 2 9 9 C 1.46895 * 110.99926 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.91861 * 328.89739 * 9 8 7 11 11 C 1.55156 * 111.00524 * 205.00282 * 9 8 7 12 12 C 1.54321 * 102.94454 * 206.42173 * 11 9 8 13 13 H 1.09002 * 109.88450 * 141.76033 * 12 11 9 14 14 C 1.52997 * 109.88460 * 262.77309 * 12 11 9 15 15 N 1.47023 * 107.40151 * 22.26868 * 12 11 9 16 16 C 1.34777 * 125.65125 * 180.93013 * 15 12 11 17 17 O 1.21279 * 119.99614 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00045 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99979 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46788 * 90.00277 * 24 22 20 26 26 H 1.48501 * 109.46477 * 209.99892 * 24 22 20 27 27 H 1.48491 * 109.47123 * 330.00009 * 24 22 20 28 28 C 1.47740 * 108.53362 * 0.92871 * 15 12 11 29 29 H 1.09004 * 109.46919 * 269.99329 * 1 2 3 30 30 H 1.08995 * 109.47687 * 29.99536 * 1 2 3 31 31 H 1.08998 * 109.47592 * 150.00052 * 1 2 3 32 32 H 1.07997 * 125.61832 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46786 * 329.99977 * 7 6 2 34 34 H 1.09000 * 109.46755 * 210.00019 * 7 6 2 35 35 H 1.00902 * 110.99773 * 56.04595 * 8 7 6 36 36 H 1.08995 * 110.72466 * 88.05421 * 11 9 8 37 37 H 1.09004 * 110.71942 * 324.78227 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.68222 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.68412 * 14 12 11 40 40 H 1.09004 * 109.47261 * 179.68394 * 14 12 11 41 41 H 1.09000 * 109.47150 * 300.00028 * 18 16 15 42 42 H 1.08994 * 109.47159 * 59.99947 * 18 16 15 43 43 H 0.97000 * 119.99470 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.38561 * 217.10759 * 28 15 12 45 45 H 1.09004 * 110.38061 * 94.87238 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5733 -0.6446 0.0051 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0006 8 7 1.7024 -2.9897 -1.3856 9 6 1.2629 -4.3908 -1.4248 10 1 1.6415 -4.9417 -0.5639 11 6 1.6908 -5.0709 -2.7521 12 6 0.6353 -6.1832 -2.9266 13 1 0.3671 -6.2779 -3.9788 14 6 1.1894 -7.5122 -2.4093 15 7 -0.5462 -5.7950 -2.1424 16 6 -1.6800 -6.5137 -2.0221 17 8 -1.7852 -7.5799 -2.5905 18 6 -2.8169 -5.9925 -1.1813 19 16 -4.1860 -7.1758 -1.2179 20 6 -5.3416 -6.3386 -0.1842 21 1 -5.0854 -5.3831 0.2488 22 6 -6.5813 -6.9074 0.0735 23 7 -6.8938 -8.0718 -0.4547 24 14 -7.8061 -6.0201 1.1699 25 1 -8.6620 -5.1345 0.3404 26 1 -8.6564 -7.0165 1.8695 27 1 -7.0736 -5.2043 2.1713 28 6 -0.2809 -4.4864 -1.5100 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4066 1.3434 -0.0011 33 1 0.8915 -2.6034 0.5136 34 1 2.5902 -3.1354 0.5129 35 1 2.5601 -2.8648 -1.9022 36 1 2.6896 -5.4979 -2.6622 37 1 1.6458 -4.3633 -3.5800 38 1 1.4438 -7.4137 -1.3540 39 1 2.0824 -7.7782 -2.9750 40 1 0.4369 -8.2914 -2.5306 41 1 -2.4782 -5.8609 -0.1537 42 1 -3.1531 -5.0348 -1.5785 43 1 -7.7600 -8.4694 -0.2743 44 1 -0.7188 -4.4511 -0.5125 45 1 -0.6774 -3.6795 -2.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486101261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -7.853547 kcal Electronic energy + Delta-G solvation = -26645.556525 eV Core-core repulsion = 22791.059055 eV Total energy + Delta-G solvation = -3854.497470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.68615 -40.14842 -37.84991 -35.81501 -35.42209 -32.43273 -32.37419 -32.08547 -29.97532 -28.74750 -27.74836 -26.00694 -25.49349 -25.32184 -22.58124 -22.26106 -21.20083 -20.85845 -19.08833 -17.75090 -17.52195 -17.12945 -16.63637 -16.37022 -15.78271 -15.58532 -15.18491 -14.80453 -14.73522 -14.44095 -14.04731 -13.87359 -13.52032 -13.50203 -13.21065 -13.11731 -12.95565 -12.85626 -12.58894 -12.50448 -12.31245 -12.02611 -11.75422 -11.39427 -11.32625 -11.24277 -11.05907 -11.01938 -10.92089 -10.76450 -10.75535 -9.81271 -9.37989 -9.16230 -9.06311 -8.94299 -8.50635 -8.23007 -6.49947 -6.21424 -3.91968 1.04549 2.30554 2.36865 2.86975 3.07163 3.22671 3.25274 3.30261 3.52767 3.75902 3.83336 4.11387 4.20555 4.32767 4.35940 4.52739 4.67511 4.75218 4.92399 5.01176 5.07089 5.11395 5.13786 5.30785 5.31350 5.37955 5.41167 5.47818 5.50153 5.55444 5.60749 5.63782 5.68510 5.72787 5.76150 5.89586 6.01436 6.05922 6.14082 6.26132 6.40955 6.54822 6.75100 7.36829 7.59759 7.68617 8.35477 8.57599 9.23913 10.85992 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.002678 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.917426 B =10453.009780 C =12850.103511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 N -0.488 5.488 4 C 0.172 3.828 5 O -0.207 6.207 6 C -0.053 4.053 7 C 0.147 3.853 8 N -0.673 5.673 9 C 0.073 3.927 10 H 0.069 0.931 11 C -0.129 4.129 12 C 0.139 3.861 13 H 0.076 0.924 14 C -0.164 4.164 15 N -0.623 5.623 16 C 0.551 3.449 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.112 3.888 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.350 0.650 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.066 14.465 -0.100 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.217 5.217 4 C -0.055 4.055 5 O -0.093 6.093 6 C -0.106 4.106 7 C 0.018 3.982 8 N -0.305 5.305 9 C -0.038 4.038 10 H 0.087 0.913 11 C -0.168 4.168 12 C 0.035 3.965 13 H 0.094 0.906 14 C -0.223 4.223 15 N -0.361 5.361 16 C 0.339 3.661 17 O -0.387 6.387 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.012 4.012 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.169 0.831 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.894 13.511 -1.018 26.603 hybrid contribution 0.597 0.984 1.670 2.028 sum 23.491 14.495 0.652 27.610 Atomic orbital electron populations 1.20204 0.86116 1.04116 1.02977 1.21577 0.98167 0.87239 1.03709 1.70397 1.01434 1.31935 1.17925 1.28010 0.97635 0.79233 1.00602 1.84407 1.30278 1.24766 1.69847 1.22960 0.80657 0.97642 1.09359 1.20344 1.01378 0.85509 0.90951 1.60361 1.38397 1.19521 1.12259 1.22695 0.95793 0.87169 0.98103 0.91335 1.22916 0.98808 0.97601 0.97427 1.21387 0.84788 0.94116 0.96185 0.90623 1.22174 1.01403 0.97828 1.00847 1.48605 1.15043 1.21322 1.51116 1.19988 0.81340 0.83756 0.80990 1.90692 1.80094 1.21438 1.46488 1.23512 0.99183 1.05806 1.01208 1.85397 1.07033 1.25311 1.65692 1.22852 1.02139 1.08596 1.34650 0.90939 1.24994 0.97446 0.95028 0.96122 1.70020 1.22182 1.15865 1.42221 0.86171 0.80270 0.79110 0.79980 1.20251 1.20778 1.19679 1.22288 0.94254 0.85835 0.98811 0.90706 0.90567 0.89699 0.73543 0.87273 0.92902 0.83082 0.89969 0.89565 0.92761 0.92105 0.90507 0.89442 0.89282 0.92196 0.90627 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.05 36.01 0.36 -0.27 16 2 C 0.01 0.13 7.11 -82.81 -0.59 -0.46 16 3 N -0.49 -4.97 11.29 -11.18 -0.13 -5.09 16 4 C 0.17 1.23 13.23 52.10 0.69 1.92 16 5 O -0.21 -1.71 10.77 5.37 0.06 -1.65 16 6 C -0.05 -0.45 6.90 -35.69 -0.25 -0.70 16 7 C 0.15 0.99 5.71 -4.98 -0.03 0.96 16 8 N -0.67 -4.56 6.40 -105.73 -0.68 -5.24 16 9 C 0.07 0.55 3.38 -65.57 -0.22 0.33 16 10 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 11 C -0.13 -0.97 5.90 -24.90 -0.15 -1.12 16 12 C 0.14 1.59 3.48 -66.96 -0.23 1.36 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.16 -1.90 9.06 37.16 0.34 -1.56 16 15 N -0.62 -8.67 3.09 -162.76 -0.50 -9.17 16 16 C 0.55 10.42 7.65 -10.98 -0.08 10.34 16 17 O -0.51 -11.61 14.77 5.56 0.08 -11.53 16 18 C -0.15 -2.97 5.18 36.01 0.19 -2.78 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C 0.11 1.17 6.40 -2.35 -0.02 1.16 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 32 H 0.25 0.53 8.06 -52.49 -0.42 0.10 16 33 H 0.11 0.69 7.80 -51.93 -0.40 0.29 16 34 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.35 2.13 8.43 -39.29 -0.33 1.80 16 36 H 0.08 0.49 7.83 -51.93 -0.41 0.08 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.16 6.76 -51.93 -0.35 0.80 16 41 H 0.09 1.64 7.86 -51.92 -0.41 1.23 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 0.77 7.51 -51.93 -0.39 0.38 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -35.96 389.22 -8.47 -44.43 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.87 Total: -0.99 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.21 Total: -3.67 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.57 Total: -44.87 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.14 Total: -13.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.96 -8.47 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.574 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds