Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34469 * 126.16705 * 2 1 4 4 C 1.30260 * 108.70399 * 180.02562 * 3 2 1 5 5 O 1.33963 * 108.75555 * 359.72836 * 4 3 2 6 6 C 1.34335 * 126.16277 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.44595 * 359.97438 * 6 2 1 8 8 N 1.46901 * 109.47232 * 90.00024 * 7 6 2 9 9 C 1.46895 * 110.99926 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.91861 * 328.89739 * 9 8 7 11 11 C 1.55156 * 111.00524 * 205.00282 * 9 8 7 12 12 C 1.54321 * 102.94454 * 206.42173 * 11 9 8 13 13 H 1.09002 * 109.88450 * 141.76033 * 12 11 9 14 14 C 1.52997 * 109.88460 * 262.77309 * 12 11 9 15 15 N 1.47023 * 107.40151 * 22.26868 * 12 11 9 16 16 C 1.34777 * 125.65125 * 180.93013 * 15 12 11 17 17 O 1.21279 * 119.99614 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00045 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99979 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46788 * 90.00277 * 24 22 20 26 26 H 1.48501 * 109.46477 * 209.99892 * 24 22 20 27 27 H 1.48491 * 109.47123 * 330.00009 * 24 22 20 28 28 C 1.47740 * 108.53362 * 0.92871 * 15 12 11 29 29 H 1.09004 * 109.46919 * 269.99329 * 1 2 3 30 30 H 1.08995 * 109.47687 * 29.99536 * 1 2 3 31 31 H 1.08998 * 109.47592 * 150.00052 * 1 2 3 32 32 H 1.07997 * 125.61832 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46786 * 329.99977 * 7 6 2 34 34 H 1.09000 * 109.46755 * 210.00019 * 7 6 2 35 35 H 1.00902 * 110.99773 * 56.04595 * 8 7 6 36 36 H 1.08995 * 110.72466 * 88.05421 * 11 9 8 37 37 H 1.09004 * 110.71942 * 324.78227 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.68222 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.68412 * 14 12 11 40 40 H 1.09004 * 109.47261 * 179.68394 * 14 12 11 41 41 H 1.09000 * 109.47150 * 300.00028 * 18 16 15 42 42 H 1.08994 * 109.47159 * 59.99947 * 18 16 15 43 43 H 0.97000 * 119.99470 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.38561 * 217.10759 * 28 15 12 45 45 H 1.09004 * 110.38061 * 94.87238 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5733 -0.6446 0.0051 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0006 8 7 1.7024 -2.9897 -1.3856 9 6 1.2629 -4.3908 -1.4248 10 1 1.6415 -4.9417 -0.5639 11 6 1.6908 -5.0709 -2.7521 12 6 0.6353 -6.1832 -2.9266 13 1 0.3671 -6.2779 -3.9788 14 6 1.1894 -7.5122 -2.4093 15 7 -0.5462 -5.7950 -2.1424 16 6 -1.6800 -6.5137 -2.0221 17 8 -1.7852 -7.5799 -2.5905 18 6 -2.8169 -5.9925 -1.1813 19 16 -4.1860 -7.1758 -1.2179 20 6 -5.3416 -6.3386 -0.1842 21 1 -5.0854 -5.3831 0.2488 22 6 -6.5813 -6.9074 0.0735 23 7 -6.8938 -8.0718 -0.4547 24 14 -7.8061 -6.0201 1.1699 25 1 -8.6620 -5.1345 0.3404 26 1 -8.6564 -7.0165 1.8695 27 1 -7.0736 -5.2043 2.1713 28 6 -0.2809 -4.4864 -1.5100 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4066 1.3434 -0.0011 33 1 0.8915 -2.6034 0.5136 34 1 2.5902 -3.1354 0.5129 35 1 2.5601 -2.8648 -1.9022 36 1 2.6896 -5.4979 -2.6622 37 1 1.6458 -4.3633 -3.5800 38 1 1.4438 -7.4137 -1.3540 39 1 2.0824 -7.7782 -2.9750 40 1 0.4369 -8.2914 -2.5306 41 1 -2.4782 -5.8609 -0.1537 42 1 -3.1531 -5.0348 -1.5785 43 1 -7.7600 -8.4694 -0.2743 44 1 -0.7188 -4.4511 -0.5125 45 1 -0.6774 -3.6795 -2.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486101261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -35.688534 kcal Electronic energy + Delta-G solvation = -26646.763541 eV Core-core repulsion = 22791.059055 eV Total energy + Delta-G solvation = -3855.704486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.26778 -41.25674 -38.98902 -36.59218 -36.05640 -34.58029 -33.41455 -32.87905 -30.73451 -30.19712 -28.40389 -27.65765 -26.86652 -25.92250 -23.44917 -23.01783 -21.82523 -21.59668 -20.39700 -19.55335 -18.20345 -17.96507 -17.68033 -17.21197 -16.87818 -16.68853 -16.42034 -16.15451 -15.95294 -15.67176 -15.05943 -14.82026 -14.60278 -14.29488 -14.17461 -14.12681 -14.04023 -13.69819 -13.62978 -13.48650 -13.16147 -13.05863 -12.99719 -12.89307 -12.87317 -12.58271 -12.10177 -12.05295 -11.95920 -11.72743 -11.66668 -11.44251 -11.13734 -10.86518 -10.27382 -9.77471 -9.68313 -9.48221 -8.67094 -8.34141 -6.12461 0.47818 1.24886 1.43110 1.45653 1.56565 1.59576 1.71469 1.83705 2.07855 2.27916 3.00066 3.03345 3.30888 3.36370 3.43793 3.57334 3.79031 3.90626 3.95798 4.03225 4.16443 4.24308 4.27873 4.38101 4.40073 4.45333 4.47969 4.63503 4.72719 4.77083 4.78158 4.87661 4.90245 4.90785 4.97482 5.06113 5.08715 5.20339 5.30359 5.42318 5.47852 5.50959 5.84859 6.20385 6.26571 6.42576 6.78714 7.07092 7.15823 8.75107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.002678 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.917426 B =10453.009780 C =12850.103511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 N -0.529 5.529 4 C 0.184 3.816 5 O -0.212 6.212 6 C -0.056 4.056 7 C 0.150 3.850 8 N -0.672 5.672 9 C 0.088 3.912 10 H 0.079 0.921 11 C -0.113 4.113 12 C 0.130 3.870 13 H 0.064 0.936 14 C -0.159 4.159 15 N -0.613 5.613 16 C 0.548 3.452 17 O -0.562 6.562 18 C -0.120 4.120 19 S -0.151 6.151 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.102 3.898 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.291 0.709 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.358 0.642 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.291 16.780 0.939 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 N -0.258 5.258 4 C -0.042 4.042 5 O -0.098 6.098 6 C -0.109 4.109 7 C 0.021 3.979 8 N -0.305 5.305 9 C -0.023 4.023 10 H 0.096 0.904 11 C -0.151 4.151 12 C 0.027 3.973 13 H 0.082 0.918 14 C -0.217 4.217 15 N -0.348 5.348 16 C 0.336 3.664 17 O -0.440 6.440 18 C -0.271 4.271 19 S 0.076 5.924 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.180 1.180 28 C -0.021 4.021 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.306 0.694 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.179 0.821 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 25.170 15.876 0.020 29.759 hybrid contribution 0.072 0.356 1.297 1.347 sum 25.242 16.232 1.316 30.039 Atomic orbital electron populations 1.20194 0.85813 1.03937 1.03212 1.21841 0.98789 0.87762 1.04667 1.70388 1.02835 1.32790 1.19828 1.28990 0.98057 0.79191 0.97969 1.84423 1.30154 1.25314 1.69936 1.23162 0.80585 0.98071 1.09076 1.20379 1.01881 0.84716 0.90900 1.60243 1.39031 1.18698 1.12560 1.22502 0.93351 0.87865 0.98558 0.90362 1.22866 0.98464 0.96151 0.97635 1.21664 0.84746 0.95813 0.95103 0.91821 1.22116 1.01229 0.96543 1.01816 1.48521 1.14099 1.21822 1.50374 1.19705 0.82397 0.83580 0.80747 1.90677 1.81206 1.23578 1.48531 1.23308 0.97034 1.03847 1.02879 1.85579 1.10924 1.29515 1.66342 1.23180 1.02532 1.08883 1.34579 0.89912 1.26135 0.99645 0.95779 0.97606 1.70188 1.22905 1.17791 1.43922 0.84954 0.77274 0.77843 0.77927 1.19339 1.20339 1.18041 1.22585 0.96914 0.83815 0.98745 0.90278 0.91324 0.89228 0.69439 0.86997 0.91668 0.82149 0.87237 0.88592 0.92096 0.89219 0.94731 0.87648 0.87847 0.92013 0.90184 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.05 71.24 0.72 -0.44 16 2 C -0.01 -0.20 7.11 41.26 0.29 0.09 16 3 N -0.53 -10.06 11.29 -304.07 -3.43 -13.49 16 4 C 0.18 2.20 13.23 130.48 1.73 3.92 16 5 O -0.21 -2.97 10.77 -3.69 -0.04 -3.01 16 6 C -0.06 -0.83 6.90 24.79 0.17 -0.66 16 7 C 0.15 1.58 5.71 85.56 0.49 2.07 16 8 N -0.67 -6.85 6.40 -488.42 -3.13 -9.97 16 9 C 0.09 1.04 3.38 46.31 0.16 1.19 16 10 H 0.08 0.85 7.83 -2.39 -0.02 0.83 16 11 C -0.11 -1.30 5.90 31.78 0.19 -1.11 16 12 C 0.13 2.77 3.48 45.34 0.16 2.93 16 13 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 14 C -0.16 -3.50 9.06 71.98 0.65 -2.85 16 15 N -0.61 -16.44 3.09 -787.26 -2.43 -18.88 16 16 C 0.55 21.02 7.65 87.66 0.67 21.69 16 17 O -0.56 -26.60 14.77 -3.03 -0.04 -26.64 16 18 C -0.12 -4.87 5.18 71.24 0.37 -4.50 16 19 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 20 C -0.54 -31.12 9.50 67.96 0.65 -30.48 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 24 Si 1.00 43.58 29.55 68.60 2.03 45.60 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 C 0.10 1.90 6.40 86.79 0.56 2.45 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.24 7.79 -2.39 -0.02 1.22 16 32 H 0.29 0.25 8.06 -2.91 -0.02 0.22 16 33 H 0.11 1.12 7.80 -2.39 -0.02 1.10 16 34 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 35 H 0.36 2.99 8.43 -89.69 -0.76 2.24 16 36 H 0.11 0.76 7.83 -2.39 -0.02 0.75 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.03 1.06 6.76 -2.38 -0.02 1.04 16 41 H 0.11 3.87 7.86 -2.40 -0.02 3.86 16 42 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.08 1.44 7.51 -2.39 -0.02 1.42 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -82.44 389.22 -0.43 -82.86 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.25 Total: 13.55 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 7.26 Total: -4.47 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -8.71 Total: -98.27 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.08 Total: -29.65 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -82.44 -0.43 -82.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486101261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.176 kcal (2) G-P(sol) polarization free energy of solvation -82.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds